Wall clock time and date at job start Tue Mar 31 2020 22:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99748 * 2 1 4 4 H 1.48497 * 109.47459 * 239.99840 * 3 2 1 5 5 H 1.48499 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46835 * 120.00023 * 3 2 1 7 7 C 1.37871 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00505 * 185.63442 * 7 2 1 9 9 C 1.50707 * 119.99721 * 5.63876 * 7 2 1 10 10 H 1.08998 * 109.47300 * 25.14663 * 9 7 2 11 11 C 1.50702 * 109.47145 * 145.15069 * 9 7 2 12 12 O 1.20829 * 119.99704 * 95.00060 * 11 9 7 13 13 N 1.34776 * 119.99918 * 274.99792 * 11 9 7 14 14 N 1.39973 * 125.97555 * 0.02562 * 13 11 9 15 15 C 1.30482 * 109.02796 * 179.71600 * 14 13 11 16 16 C 1.41013 * 108.54511 * 0.44558 * 15 14 13 17 17 C 1.48338 * 126.32983 * 179.82034 * 16 15 14 18 18 N 1.33713 * 126.31667 * 179.71588 * 17 16 15 19 19 N 1.28568 * 109.84981 * 179.73410 * 18 17 16 20 20 N 1.28922 * 109.73275 * 359.97438 * 19 18 17 21 21 H 0.96994 * 126.42512 * 179.97438 * 20 19 18 22 22 N 1.32037 * 126.31031 * 359.39565 * 17 16 15 23 23 C 1.36630 * 125.97316 * 179.97438 * 13 11 9 24 24 N 1.38507 * 126.48454 * 0.02562 * 23 13 11 25 25 C 1.50699 * 109.46890 * 265.14911 * 9 7 2 26 26 C 1.38232 * 120.00282 * 306.59405 * 25 9 7 27 27 C 1.38231 * 120.00460 * 179.79103 * 26 25 9 28 28 C 1.38240 * 119.99726 * 0.43399 * 27 26 25 29 29 C 1.38241 * 119.99838 * 359.81715 * 28 27 26 30 30 C 1.38228 * 119.99904 * 359.97438 * 29 28 27 31 31 H 0.96992 * 119.99739 * 359.97438 * 1 2 3 32 32 H 1.08003 * 125.72021 * 180.26124 * 15 14 13 33 33 H 0.96994 * 119.99892 * 179.97438 * 24 23 13 34 34 H 0.97003 * 119.99744 * 359.97438 * 24 23 13 35 35 H 1.08007 * 120.00056 * 359.97438 * 26 25 9 36 36 H 1.07999 * 120.00748 * 180.27307 * 27 26 25 37 37 H 1.08002 * 120.00460 * 179.83764 * 28 27 26 38 38 H 1.07998 * 119.99480 * 179.97438 * 29 28 27 39 39 H 1.08001 * 120.00316 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0808 -1.1963 0.0913 9 6 1.2566 -2.4959 -0.1294 10 1 0.3097 -2.3219 -0.6405 11 6 2.0837 -3.4740 -0.9232 12 8 2.7914 -4.2698 -0.3523 13 7 2.0340 -3.4613 -2.2700 14 7 1.2620 -2.5980 -3.0562 15 6 1.4696 -2.8693 -4.3154 16 6 2.3864 -3.9376 -4.3988 17 6 2.8948 -4.5642 -5.6435 18 7 3.7681 -5.5736 -5.7224 19 7 3.9828 -5.8698 -6.9549 20 7 3.2856 -5.0975 -7.7161 21 1 3.2642 -5.1109 -8.6857 22 7 2.5638 -4.2319 -6.8778 23 6 2.7291 -4.2881 -3.1067 24 7 3.6096 -5.2890 -2.7309 25 6 0.9906 -3.0602 1.2424 26 6 2.0341 -3.2356 2.1319 27 6 1.7896 -3.7492 3.3918 28 6 0.5027 -4.0959 3.7590 29 6 -0.5401 -3.9253 2.8676 30 6 -0.2961 -3.4077 1.6094 31 1 -0.4849 0.8400 0.0004 32 1 1.0133 -2.3629 -5.1532 33 1 4.0542 -5.8230 -3.4076 34 1 3.7817 -5.4559 -1.7910 35 1 3.0402 -2.9686 1.8437 36 1 2.6042 -3.8821 4.0883 37 1 0.3119 -4.4996 4.7424 38 1 -1.5453 -4.1966 3.1544 39 1 -1.1108 -3.2741 0.9131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592674529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:10 Heat of formation + Delta-G solvation = 174.859393 kcal Electronic energy + Delta-G solvation = -28428.408752 eV Core-core repulsion = 24375.142766 eV Total energy + Delta-G solvation = -4053.265986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.12148 -42.91559 -40.57269 -39.28036 -36.16483 -35.45770 -34.92377 -33.96266 -33.14194 -32.71198 -31.54971 -29.77554 -29.22794 -26.40302 -25.56267 -24.85505 -23.80452 -23.22544 -22.37059 -21.58239 -20.72717 -19.74847 -18.80302 -18.61971 -17.52453 -17.51602 -17.41516 -17.16635 -16.93829 -16.38217 -16.08763 -15.79497 -15.57758 -15.16620 -14.99154 -14.69370 -14.29978 -14.06152 -13.97116 -13.55576 -13.32445 -13.25635 -12.96743 -12.78415 -12.45253 -12.30699 -12.26377 -12.02009 -11.94363 -11.78347 -11.76265 -11.65039 -11.39675 -11.02600 -10.61902 -10.56250 -9.57490 -9.32871 -8.90527 -8.20817 -6.31951 -0.20180 0.14298 0.68566 0.74673 0.89784 1.06637 1.40226 1.42737 1.43963 1.50696 1.80849 2.07809 2.41540 2.57134 2.83743 3.01607 3.12668 3.23503 3.51908 3.92844 4.12548 4.24827 4.29749 4.34749 4.43190 4.51247 4.59788 4.64675 4.84815 4.94435 5.06269 5.12466 5.32440 5.42767 5.58943 5.60662 5.77705 5.80600 5.80939 5.90824 6.03661 6.17807 6.29945 6.38888 6.52144 6.72809 6.85459 7.15606 7.34097 8.87866 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.003683 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.944383 B = 7600.335570 C = 9029.793110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.046 3.954 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.046 0.954 9 C 0.073 3.927 10 H 0.078 0.922 11 C 0.565 3.435 12 O -0.517 6.517 13 N -0.385 5.385 14 N -0.290 5.290 15 C 0.146 3.854 16 C -0.267 4.267 17 C 0.305 3.695 18 N -0.341 5.341 19 N 0.010 4.990 20 N -0.273 5.273 21 H 0.488 0.512 22 N -0.305 5.305 23 C 0.425 3.575 24 N -0.804 5.804 25 C -0.056 4.056 26 C -0.104 4.104 27 C -0.135 4.135 28 C -0.137 4.137 29 C -0.129 4.129 30 C -0.136 4.136 31 H 0.269 0.731 32 H 0.229 0.771 33 H 0.432 0.568 34 H 0.417 0.583 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.050 -9.502 -9.390 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.158 4.158 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.064 0.936 9 C 0.052 3.948 10 H 0.096 0.904 11 C 0.360 3.640 12 O -0.388 6.388 13 N -0.188 5.188 14 N -0.107 5.107 15 C -0.049 4.049 16 C -0.288 4.288 17 C 0.024 3.976 18 N -0.219 5.219 19 N 0.014 4.986 20 N -0.125 5.125 21 H 0.346 0.654 22 N -0.150 5.150 23 C 0.195 3.805 24 N -0.353 5.353 25 C -0.057 4.057 26 C -0.122 4.122 27 C -0.153 4.153 28 C -0.155 4.155 29 C -0.147 4.147 30 C -0.154 4.154 31 H 0.078 0.922 32 H 0.245 0.755 33 H 0.268 0.732 34 H 0.251 0.749 35 H 0.118 0.882 36 H 0.155 0.845 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.990 -9.494 -8.393 13.020 hybrid contribution 0.839 0.658 -1.018 1.474 sum 3.829 -8.836 -9.412 13.465 Atomic orbital electron populations 1.69987 1.06899 1.28085 1.47609 1.25458 0.95539 1.01668 0.93148 0.85740 0.78700 0.79343 0.78690 1.19882 1.20116 1.19857 1.20482 0.92391 0.89221 1.53563 0.93591 1.17863 0.97001 0.90892 0.89005 0.90408 1.22125 0.81100 0.82261 0.78490 1.90385 1.40724 1.39600 1.68101 1.47537 1.36344 1.28214 1.06710 1.77840 1.16613 1.13513 1.02710 1.24491 0.92781 0.92368 0.95214 1.16501 1.16624 1.10273 0.85390 1.22227 0.92386 0.91588 0.91362 1.75200 1.19283 1.16688 1.10732 1.78175 1.11283 1.12836 0.96337 1.50934 1.27711 1.20815 1.13050 0.65353 1.78886 1.19771 1.16189 1.00139 1.18933 0.86565 0.85594 0.89422 1.42243 1.45124 1.34523 1.13396 1.20152 0.93747 0.94774 0.97033 1.20918 0.98314 0.98856 0.94110 1.21351 0.98087 0.99971 0.95857 1.21326 0.92355 1.01419 1.00351 1.21311 1.00160 0.99993 0.93266 1.21142 0.96030 1.00304 0.97935 0.92215 0.75474 0.73201 0.74920 0.88213 0.84461 0.83386 0.84115 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.71 12.85 21.45 0.28 -48.43 16 2 C 0.05 2.42 5.45 84.65 0.46 2.88 16 3 Si 0.95 42.53 29.54 68.60 2.03 44.56 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.52 -27.67 7.64 25.60 0.20 -27.47 16 8 H 0.05 2.50 7.82 -2.91 -0.02 2.48 16 9 C 0.07 3.65 2.05 -13.03 -0.03 3.63 16 10 H 0.08 4.22 6.85 -2.39 -0.02 4.21 16 11 C 0.56 25.81 6.94 87.66 0.61 26.42 16 12 O -0.52 -23.03 13.35 -1.66 -0.02 -23.05 16 13 N -0.39 -15.95 3.65 -307.21 -1.12 -17.08 16 14 N -0.29 -11.77 11.77 -56.44 -0.66 -12.43 16 15 C 0.15 4.62 11.97 85.57 1.02 5.65 16 16 C -0.27 -8.40 6.15 -19.92 -0.12 -8.52 16 17 C 0.30 8.38 8.14 137.37 1.12 9.50 16 18 N -0.34 -8.85 10.70 -52.31 -0.56 -9.41 16 19 N 0.01 0.21 13.42 37.02 0.50 0.70 16 20 N -0.27 -4.41 8.44 37.02 0.31 -4.10 16 21 H 0.49 2.92 8.96 -340.35 -3.05 -0.13 16 22 N -0.31 -7.03 12.90 -52.28 -0.67 -7.70 16 23 C 0.42 14.87 7.93 131.70 1.04 15.92 16 24 N -0.80 -23.82 9.01 -53.91 -0.49 -24.31 16 25 C -0.06 -2.62 4.57 -19.87 -0.09 -2.71 16 26 C -0.10 -4.52 8.03 22.27 0.18 -4.35 16 27 C -0.13 -4.82 10.05 22.27 0.22 -4.59 16 28 C -0.14 -4.40 10.05 22.27 0.22 -4.18 16 29 C -0.13 -4.52 10.05 22.27 0.22 -4.30 16 30 C -0.14 -5.79 9.67 22.27 0.22 -5.58 16 31 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 32 H 0.23 5.30 8.06 -2.91 -0.02 5.28 16 33 H 0.43 10.99 7.22 -92.71 -0.67 10.32 16 34 H 0.42 12.70 6.69 -92.71 -0.62 12.08 16 35 H 0.10 4.54 7.65 -2.91 -0.02 4.52 16 36 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 37 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 38 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 39 H 0.11 4.58 7.96 -2.91 -0.02 4.56 16 Total: -1.00 -66.75 349.34 1.69 -65.06 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -3.17 Total: 33.90 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 5.28 Total: 2.29 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -2.42 Total: -122.76 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.02 Total: -23.05 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -66.75 1.69 -65.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.916 kcal (2) G-P(sol) polarization free energy of solvation -66.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds