Wall clock time and date at job start Tue Mar 31 2020 22:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00513 * 2 1 4 4 H 1.48493 * 109.47261 * 269.99862 * 3 2 1 5 5 H 1.48506 * 109.46840 * 29.99912 * 3 2 1 6 6 H 1.48501 * 109.47239 * 149.99738 * 3 2 1 7 7 C 1.37877 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00189 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00230 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47521 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00599 * 180.02562 * 10 9 7 12 12 O 1.21579 * 119.99543 * 359.97438 * 11 10 9 13 13 C 1.47662 * 120.00488 * 179.97438 * 11 10 9 14 14 C 1.41537 * 126.44704 * 179.97438 * 13 11 10 15 15 C 1.35351 * 105.55753 * 179.71853 * 14 13 11 16 16 N 1.35857 * 107.12518 * 0.41212 * 15 14 13 17 17 C 1.40126 * 124.95698 * 179.83887 * 16 15 14 18 18 C 1.38948 * 120.01565 * 4.71341 * 17 16 15 19 19 C 1.38162 * 120.17352 * 180.02562 * 18 17 16 20 20 C 1.38095 * 120.19103 * 0.02562 * 19 18 17 21 21 C 1.39323 * 120.01780 * 359.97438 * 20 19 18 22 22 C 1.48463 * 120.08789 * 179.97438 * 21 20 19 23 23 N 1.34040 * 126.67727 * 179.68791 * 22 21 20 24 24 N 1.28989 * 107.27270 * 179.83880 * 23 22 21 25 25 N 1.28733 * 108.94103 * 0.42922 * 24 23 22 26 26 H 0.96999 * 125.34658 * 179.71000 * 25 24 23 27 27 N 1.28877 * 109.31572 * 359.73085 * 25 24 23 28 28 C 1.38646 * 120.01120 * 184.73967 * 17 16 15 29 29 N 1.28481 * 110.08196 * 359.56629 * 16 15 14 30 30 H 0.97004 * 119.99526 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47602 * 60.00274 * 9 7 2 32 32 H 1.09002 * 109.46814 * 300.00401 * 9 7 2 33 33 H 0.97009 * 119.99917 * 359.97438 * 10 9 7 34 34 H 1.08000 * 127.21844 * 0.02562 * 14 13 11 35 35 H 1.08007 * 126.43407 * 180.24075 * 15 14 13 36 36 H 1.08006 * 119.91153 * 0.04726 * 18 17 16 37 37 H 1.08001 * 119.90943 * 180.02562 * 19 18 17 38 38 H 1.07999 * 119.99509 * 179.70014 * 20 19 18 39 39 H 1.07999 * 120.08962 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3248 -2.8218 0.0020 12 8 6.1149 -1.8977 0.0025 13 6 5.8169 -4.2140 0.0024 14 6 7.1706 -4.6272 0.0029 15 6 7.1371 -5.9803 0.0096 16 7 5.8293 -6.3481 0.0036 17 6 5.3673 -7.6710 0.0043 18 6 6.2696 -8.7223 0.1104 19 6 5.8178 -10.0279 0.1109 20 6 4.4671 -10.2954 0.0054 21 6 3.5553 -9.2474 -0.1014 22 6 2.1029 -9.5331 -0.2155 23 7 1.1154 -8.6326 -0.3186 24 7 0.0069 -9.2873 -0.3990 25 7 0.2611 -10.5479 -0.3415 26 1 -0.4010 -11.2560 -0.3766 27 7 1.5331 -10.7217 -0.2293 28 6 4.0096 -7.9315 -0.1015 29 7 5.0779 -5.3059 0.0028 30 1 -0.4850 0.8401 -0.0004 31 1 3.8745 -0.6803 0.8911 32 1 3.8751 -0.6805 -0.8888 33 1 3.3693 -3.3127 0.0010 34 1 8.0465 -3.9954 0.0034 35 1 7.9899 -6.6431 0.0156 36 1 7.3270 -8.5182 0.1931 37 1 6.5228 -10.8418 0.1941 38 1 4.1177 -11.3173 0.0013 39 1 3.3067 -7.1158 -0.1850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:05 Heat of formation + Delta-G solvation = 207.400779 kcal Electronic energy + Delta-G solvation = -26986.779926 eV Core-core repulsion = 22934.925041 eV Total energy + Delta-G solvation = -4051.854886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.76492 -42.91633 -39.66386 -38.54024 -34.87981 -34.33299 -34.25572 -33.28793 -32.29230 -31.52023 -30.57829 -29.72654 -27.85474 -25.28628 -25.02498 -24.35840 -22.72679 -22.40665 -21.21974 -20.84729 -19.60649 -19.52272 -18.60387 -17.44621 -17.42180 -16.63029 -16.20767 -16.17777 -15.47641 -15.40672 -15.07238 -14.41386 -14.33615 -14.10790 -14.06597 -13.70649 -13.40778 -13.38922 -12.81495 -12.64740 -12.31260 -12.23856 -12.13748 -11.85157 -11.69400 -11.40517 -11.39673 -10.99723 -10.83840 -10.71233 -10.24604 -9.91190 -9.49997 -9.38240 -9.33432 -9.27622 -8.70057 -8.51235 -8.06449 -6.12218 -4.14166 0.14107 0.54510 0.87573 1.73388 1.89125 2.07000 2.20587 2.24278 3.26426 3.31491 3.33472 3.39735 3.48348 3.81134 3.90259 3.95613 4.21635 4.36570 4.41149 4.55723 4.58590 4.70433 4.89872 4.99962 5.06082 5.15172 5.22551 5.41697 5.44381 5.59190 5.73316 5.78146 5.80242 5.91163 6.04365 6.16273 6.38638 6.77977 6.87681 7.13648 7.26368 7.45295 7.80886 7.84163 8.23849 8.60189 8.83377 8.96397 9.47107 10.99797 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009702 B = 0.002953 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.442471 B = 9478.788130 C =12342.885118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.219 3.781 10 N -0.686 5.686 11 C 0.585 3.415 12 O -0.549 6.549 13 C 0.013 3.987 14 C -0.168 4.168 15 C -0.023 4.023 16 N -0.243 5.243 17 C 0.145 3.855 18 C -0.111 4.111 19 C -0.097 4.097 20 C -0.085 4.085 21 C 0.006 3.994 22 C 0.215 3.785 23 N -0.255 5.255 24 N -0.041 5.041 25 N -0.228 5.228 26 H 0.476 0.524 27 N -0.293 5.293 28 C -0.069 4.069 29 N -0.256 5.256 30 H 0.267 0.733 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.404 0.596 34 H 0.168 0.832 35 H 0.185 0.815 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.504 -29.000 -0.130 30.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.100 0.900 9 C 0.097 3.903 10 N -0.334 5.334 11 C 0.368 3.632 12 O -0.426 6.426 13 C -0.150 4.150 14 C -0.195 4.195 15 C -0.161 4.161 16 N -0.025 5.025 17 C 0.054 3.946 18 C -0.132 4.132 19 C -0.116 4.116 20 C -0.106 4.106 21 C 0.002 3.998 22 C -0.065 4.065 23 N -0.128 5.128 24 N -0.036 5.036 25 N -0.073 5.073 26 H 0.330 0.670 27 N -0.145 5.145 28 C -0.091 4.091 29 N -0.088 5.088 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.239 0.761 34 H 0.186 0.814 35 H 0.202 0.798 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.074 -28.413 -0.188 29.828 hybrid contribution 0.803 0.176 -0.003 0.822 sum 9.877 -28.237 -0.191 29.915 Atomic orbital electron populations 1.69890 1.06197 1.27296 1.49556 1.24785 0.94783 0.99078 0.93951 0.86832 0.80629 0.83289 0.79033 1.19845 1.20959 1.18410 1.21105 0.88411 0.95391 1.53087 0.90031 1.19580 0.95456 0.78224 0.97019 1.46118 1.05287 1.11560 1.70438 1.16918 0.83387 0.84912 0.78014 1.90751 1.55895 1.43745 1.52212 1.22471 0.92208 0.93092 1.07208 1.21874 0.97546 0.93320 1.06785 1.22962 0.87419 0.96585 1.09155 1.42685 1.04505 1.03831 1.51477 1.17402 0.93380 0.80137 1.03716 1.21025 0.99696 0.91489 1.01016 1.20891 0.95317 0.95822 0.99529 1.21272 0.92550 0.99086 0.97676 1.16952 0.85442 0.93215 1.04164 1.23508 0.96150 0.84583 1.02269 1.76251 0.94083 1.25849 1.16587 1.79049 1.20727 0.89604 1.14202 1.47775 1.05512 1.08450 1.45601 0.66952 1.74854 0.92434 1.25302 1.21883 1.21005 0.94131 0.96992 0.96952 1.73668 1.23396 0.92669 1.19063 0.92333 0.95357 0.95814 0.76094 0.81408 0.79818 0.84253 0.83893 0.84177 0.82377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.96 55.43 0.77 -26.49 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.27 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.54 -15.55 9.83 -34.44 -0.34 -15.88 16 8 H 0.08 2.46 7.84 -52.49 -0.41 2.05 16 9 C 0.22 5.66 4.50 -5.20 -0.02 5.64 16 10 N -0.69 -15.55 5.54 -62.49 -0.35 -15.90 16 11 C 0.59 12.55 7.82 -12.41 -0.10 12.45 16 12 O -0.55 -13.11 16.92 5.30 0.09 -13.02 16 13 C 0.01 0.23 7.13 -82.75 -0.59 -0.36 16 14 C -0.17 -2.32 10.80 -39.35 -0.42 -2.74 16 15 C -0.02 -0.24 10.77 -16.80 -0.18 -0.42 16 16 N -0.24 -3.15 3.52 -10.58 -0.04 -3.19 16 17 C 0.14 1.54 6.65 -83.65 -0.56 0.98 16 18 C -0.11 -0.76 9.43 -39.35 -0.37 -1.13 16 19 C -0.10 -0.52 10.03 -39.66 -0.40 -0.92 16 20 C -0.09 -0.59 9.70 -39.23 -0.38 -0.97 16 21 C 0.01 0.06 5.87 -104.92 -0.62 -0.56 16 22 C 0.21 2.37 7.93 -156.31 -1.24 1.13 16 23 N -0.25 -3.37 12.23 32.15 0.39 -2.98 16 24 N -0.04 -0.45 13.47 60.35 0.81 0.37 16 25 N -0.23 -1.62 7.90 60.35 0.48 -1.15 16 26 H 0.48 0.97 8.96 -340.37 -3.05 -2.08 16 27 N -0.29 -2.58 12.08 32.17 0.39 -2.19 16 28 C -0.07 -0.80 9.25 -39.07 -0.36 -1.16 16 29 N -0.26 -4.20 10.85 33.42 0.36 -3.84 16 30 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 32 H 0.02 0.63 7.57 -51.93 -0.39 0.24 16 33 H 0.40 8.66 8.04 -40.82 -0.33 8.33 16 34 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.18 1.07 6.98 -52.48 -0.37 0.70 16 36 H 0.14 0.57 6.65 -52.48 -0.35 0.22 16 37 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 38 H 0.14 0.73 7.88 -52.49 -0.41 0.31 16 39 H 0.16 2.17 7.48 -52.49 -0.39 1.78 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -37.57 352.89 -8.20 -45.77 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.09 Total: 1.80 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -5.67 Total: -1.77 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 2.82 Total: -55.36 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.57 -8.20 -45.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.176 kcal (2) G-P(sol) polarization free energy of solvation -37.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 215.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 207.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds