Wall clock time and date at job start Tue Mar 31 2020 22:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00513 * 2 1 4 4 H 1.48493 * 109.47261 * 269.99862 * 3 2 1 5 5 H 1.48506 * 109.46840 * 29.99912 * 3 2 1 6 6 H 1.48501 * 109.47239 * 149.99738 * 3 2 1 7 7 C 1.37877 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00189 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00230 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47521 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00599 * 180.02562 * 10 9 7 12 12 O 1.21579 * 119.99543 * 359.97438 * 11 10 9 13 13 C 1.47662 * 120.00488 * 179.97438 * 11 10 9 14 14 C 1.41537 * 126.44704 * 179.97438 * 13 11 10 15 15 C 1.35351 * 105.55753 * 179.71853 * 14 13 11 16 16 N 1.35857 * 107.12518 * 0.41212 * 15 14 13 17 17 C 1.40126 * 124.95698 * 179.83887 * 16 15 14 18 18 C 1.38948 * 120.01565 * 4.71341 * 17 16 15 19 19 C 1.38162 * 120.17352 * 180.02562 * 18 17 16 20 20 C 1.38095 * 120.19103 * 0.02562 * 19 18 17 21 21 C 1.39323 * 120.01780 * 359.97438 * 20 19 18 22 22 C 1.48463 * 120.08789 * 179.97438 * 21 20 19 23 23 N 1.34040 * 126.67727 * 179.68791 * 22 21 20 24 24 N 1.28989 * 107.27270 * 179.83880 * 23 22 21 25 25 N 1.28733 * 108.94103 * 0.42922 * 24 23 22 26 26 H 0.96999 * 125.34658 * 179.71000 * 25 24 23 27 27 N 1.28877 * 109.31572 * 359.73085 * 25 24 23 28 28 C 1.38646 * 120.01120 * 184.73967 * 17 16 15 29 29 N 1.28481 * 110.08196 * 359.56629 * 16 15 14 30 30 H 0.97004 * 119.99526 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47602 * 60.00274 * 9 7 2 32 32 H 1.09002 * 109.46814 * 300.00401 * 9 7 2 33 33 H 0.97009 * 119.99917 * 359.97438 * 10 9 7 34 34 H 1.08000 * 127.21844 * 0.02562 * 14 13 11 35 35 H 1.08007 * 126.43407 * 180.24075 * 15 14 13 36 36 H 1.08006 * 119.91153 * 0.04726 * 18 17 16 37 37 H 1.08001 * 119.90943 * 180.02562 * 19 18 17 38 38 H 1.07999 * 119.99509 * 179.70014 * 20 19 18 39 39 H 1.07999 * 120.08962 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3248 -2.8218 0.0020 12 8 6.1149 -1.8977 0.0025 13 6 5.8169 -4.2140 0.0024 14 6 7.1706 -4.6272 0.0029 15 6 7.1371 -5.9803 0.0096 16 7 5.8293 -6.3481 0.0036 17 6 5.3673 -7.6710 0.0043 18 6 6.2696 -8.7223 0.1104 19 6 5.8178 -10.0279 0.1109 20 6 4.4671 -10.2954 0.0054 21 6 3.5553 -9.2474 -0.1014 22 6 2.1029 -9.5331 -0.2155 23 7 1.1154 -8.6326 -0.3186 24 7 0.0069 -9.2873 -0.3990 25 7 0.2611 -10.5479 -0.3415 26 1 -0.4010 -11.2560 -0.3766 27 7 1.5331 -10.7217 -0.2293 28 6 4.0096 -7.9315 -0.1015 29 7 5.0779 -5.3059 0.0028 30 1 -0.4850 0.8401 -0.0004 31 1 3.8745 -0.6803 0.8911 32 1 3.8751 -0.6805 -0.8888 33 1 3.3693 -3.3127 0.0010 34 1 8.0465 -3.9954 0.0034 35 1 7.9899 -6.6431 0.0156 36 1 7.3270 -8.5182 0.1931 37 1 6.5228 -10.8418 0.1941 38 1 4.1177 -11.3173 0.0013 39 1 3.3067 -7.1158 -0.1850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:04 Heat of formation + Delta-G solvation = 177.946836 kcal Electronic energy + Delta-G solvation = -26988.057145 eV Core-core repulsion = 22934.925041 eV Total energy + Delta-G solvation = -4053.132104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.53977 -43.94835 -40.56760 -40.04617 -36.23803 -35.67368 -35.16219 -34.46368 -34.05507 -32.38442 -31.45221 -30.83873 -29.66684 -26.18437 -25.90189 -25.47487 -23.97266 -23.46943 -22.63339 -21.73373 -21.13201 -20.27972 -19.54539 -19.06454 -18.21928 -17.95679 -17.28398 -17.28187 -16.96670 -16.38588 -16.12070 -16.05248 -15.96799 -15.15524 -14.95528 -14.77464 -14.56641 -14.46354 -14.29631 -14.01684 -13.97101 -13.41183 -13.08973 -12.85961 -12.70268 -12.51158 -12.50554 -12.21060 -12.17157 -11.95118 -11.90592 -11.69026 -11.25108 -11.12808 -10.92832 -10.32233 -10.04213 -9.94139 -9.32739 -8.40195 -6.48899 -0.51492 -0.23344 0.10364 0.67721 1.10261 1.25412 1.34540 1.34921 1.38633 1.40841 1.49377 2.28438 2.33855 2.36187 2.54434 2.68129 2.94332 3.06789 3.27987 3.72533 3.78849 3.90972 4.01065 4.12158 4.21499 4.29949 4.39341 4.53185 4.62148 4.69187 4.75684 4.85130 4.98626 5.06842 5.19609 5.22128 5.28192 5.35148 5.40962 5.55699 5.59077 5.97418 6.05963 6.49375 6.61620 6.85741 7.04846 7.09976 7.24307 8.75162 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009702 B = 0.002953 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.442471 B = 9478.788130 C =12342.885118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.025 3.975 3 Si 0.944 3.056 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.553 4.553 8 H 0.050 0.950 9 C 0.232 3.768 10 N -0.695 5.695 11 C 0.588 3.412 12 O -0.578 6.578 13 C -0.027 4.027 14 C -0.183 4.183 15 C 0.010 3.990 16 N -0.236 5.236 17 C 0.112 3.888 18 C -0.089 4.089 19 C -0.079 4.079 20 C -0.071 4.071 21 C -0.013 4.013 22 C 0.204 3.796 23 N -0.305 5.305 24 N -0.061 5.061 25 N -0.196 5.196 26 H 0.496 0.504 27 N -0.280 5.280 28 C -0.092 4.092 29 N -0.285 5.285 30 H 0.274 0.726 31 H 0.021 0.979 32 H 0.020 0.980 33 H 0.407 0.593 34 H 0.181 0.819 35 H 0.246 0.754 36 H 0.180 0.820 37 H 0.192 0.808 38 H 0.162 0.838 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.064 -32.377 0.028 35.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.767 3.233 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.590 4.590 8 H 0.068 0.932 9 C 0.109 3.891 10 N -0.343 5.343 11 C 0.373 3.627 12 O -0.457 6.457 13 C -0.187 4.187 14 C -0.211 4.211 15 C -0.129 4.129 16 N -0.018 5.018 17 C 0.022 3.978 18 C -0.110 4.110 19 C -0.097 4.097 20 C -0.091 4.091 21 C -0.017 4.017 22 C -0.076 4.076 23 N -0.177 5.177 24 N -0.056 5.056 25 N -0.047 5.047 26 H 0.355 0.645 27 N -0.133 5.133 28 C -0.115 4.115 29 N -0.120 5.120 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.242 0.758 34 H 0.198 0.802 35 H 0.263 0.737 36 H 0.198 0.802 37 H 0.209 0.791 38 H 0.180 0.820 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.605 -31.822 -0.033 34.227 hybrid contribution -0.365 0.850 -0.050 0.927 sum 12.240 -30.971 -0.084 33.302 Atomic orbital electron populations 1.70004 1.07873 1.28756 1.50417 1.25679 0.95647 1.02949 0.93236 0.85760 0.79303 0.78562 0.79705 1.18642 1.19505 1.18014 1.21259 0.89951 0.94549 1.53285 0.93187 1.19220 0.93473 0.80086 0.96325 1.46021 1.06352 1.10330 1.71573 1.17382 0.82266 0.86703 0.76353 1.90701 1.56260 1.45374 1.53394 1.21978 0.94242 0.91338 1.11124 1.22124 0.96038 0.95027 1.07876 1.23787 0.87704 0.96091 1.05344 1.42981 1.05259 1.03941 1.49633 1.17784 0.93704 0.79870 1.06451 1.21534 1.00850 0.90592 0.98024 1.21462 0.95114 0.96448 0.96692 1.21642 0.92972 0.99055 0.95438 1.17099 0.85437 0.93389 1.05729 1.23847 0.96715 0.84672 1.02325 1.76233 0.95226 1.27610 1.18602 1.78972 1.20470 0.90842 1.15317 1.47846 1.05686 1.08161 1.43044 0.64470 1.74811 0.92706 1.24167 1.21572 1.20810 0.94565 0.96927 0.99155 1.73597 1.24780 0.93495 1.20080 0.91726 0.96077 0.96210 0.75840 0.80196 0.73745 0.80231 0.79082 0.82018 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.72 13.96 21.45 0.30 -58.42 16 2 C 0.03 1.50 5.47 84.66 0.46 1.96 16 3 Si 0.94 46.02 27.47 68.60 1.88 47.91 16 4 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 7 C -0.55 -33.35 9.83 25.60 0.25 -33.10 16 8 H 0.05 3.25 7.84 -2.91 -0.02 3.22 16 9 C 0.23 12.52 4.50 85.63 0.38 12.91 16 10 N -0.69 -33.57 5.54 -469.89 -2.61 -36.18 16 11 C 0.59 26.47 7.82 86.73 0.68 27.14 16 12 O -0.58 -28.57 16.92 -3.97 -0.07 -28.63 16 13 C -0.03 -0.98 7.13 42.44 0.30 -0.67 16 14 C -0.18 -4.83 10.80 22.42 0.24 -4.58 16 15 C 0.01 0.17 10.77 83.40 0.90 1.07 16 16 N -0.24 -5.81 3.52 -187.38 -0.66 -6.47 16 17 C 0.11 2.18 6.65 38.08 0.25 2.43 16 18 C -0.09 -0.75 9.43 22.42 0.21 -0.53 16 19 C -0.08 -0.38 10.03 22.22 0.22 -0.16 16 20 C -0.07 -0.71 9.70 22.50 0.22 -0.50 16 21 C -0.01 -0.24 5.87 -20.06 -0.12 -0.36 16 22 C 0.20 4.59 7.93 137.38 1.09 5.68 16 23 N -0.31 -8.71 12.23 -52.18 -0.64 -9.35 16 24 N -0.06 -1.42 13.47 37.02 0.50 -0.92 16 25 N -0.20 -2.71 7.90 37.02 0.29 -2.42 16 26 H 0.50 1.47 8.96 -347.54 -3.12 -1.64 16 27 N -0.28 -4.66 12.08 -52.13 -0.63 -5.29 16 28 C -0.09 -2.22 9.25 22.60 0.21 -2.01 16 29 N -0.29 -9.76 10.85 -48.17 -0.52 -10.28 16 30 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 31 H 0.02 1.17 7.20 -2.39 -0.02 1.16 16 32 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 33 H 0.41 19.08 8.04 -92.70 -0.75 18.34 16 34 H 0.18 4.12 8.06 -2.91 -0.02 4.09 16 35 H 0.25 1.10 6.98 -2.91 -0.02 1.08 16 36 H 0.18 0.05 6.65 -2.91 -0.02 0.03 16 37 H 0.19 -0.76 8.06 -2.91 -0.02 -0.78 16 38 H 0.16 0.94 7.88 -2.91 -0.02 0.92 16 39 H 0.12 3.75 7.48 -2.91 -0.02 3.72 16 Total: -1.00 -89.78 352.89 0.40 -89.38 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -2.76 Total: 11.39 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 5.31 Total: 9.28 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -3.96 Total: -129.33 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.07 Total: -28.63 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.88 Total: 47.91 kcal Total: -89.78 0.40 -89.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 267.325 kcal (2) G-P(sol) polarization free energy of solvation -89.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds