Wall clock time and date at job start Tue Mar 31 2020 22:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86807 * 119.99885 * 2 1 4 4 H 1.48493 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46986 * 299.99810 * 3 2 1 6 6 H 1.48500 * 109.47126 * 59.99540 * 3 2 1 7 7 C 1.38654 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99993 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99744 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99967 * 185.05420 * 9 7 2 11 11 C 1.38871 * 120.06697 * 354.46580 * 10 9 7 12 12 C 1.38099 * 119.93141 * 180.02562 * 11 10 9 13 13 C 1.38308 * 120.06739 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.92905 * 179.97438 * 13 12 11 15 15 N 1.46508 * 109.47304 * 89.99831 * 14 13 12 16 16 C 1.38924 * 120.00059 * 179.97438 * 15 14 13 17 17 C 1.39430 * 119.99093 * 359.97438 * 16 15 14 18 18 N 1.31795 * 120.01365 * 179.73964 * 17 16 15 19 19 C 1.33051 * 119.99515 * 0.55143 * 18 17 16 20 20 C 1.48390 * 120.00989 * 179.71628 * 19 18 17 21 21 N 1.34073 * 126.67713 * 179.68353 * 20 19 18 22 22 N 1.28993 * 107.26048 * 179.77591 * 21 20 19 23 23 N 1.28727 * 108.94995 * 0.43234 * 22 21 20 24 24 H 0.97002 * 125.33039 * 179.82646 * 23 22 21 25 25 N 1.28868 * 109.32935 * 359.55955 * 23 22 21 26 26 C 1.39252 * 119.97758 * 359.45204 * 19 18 17 27 27 N 1.32084 * 119.98606 * 0.26570 * 26 19 18 28 28 C 1.38298 * 120.13813 * 0.24807 * 13 12 11 29 29 C 1.38099 * 120.06716 * 359.45689 * 28 13 12 30 30 H 0.96999 * 120.00044 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.04061 * 359.97438 * 11 10 9 32 32 H 1.08004 * 119.97028 * 180.02562 * 12 11 10 33 33 H 1.08996 * 109.47401 * 329.99676 * 14 13 12 34 34 H 1.09002 * 109.46963 * 209.99722 * 14 13 12 35 35 H 0.96994 * 119.99558 * 0.02562 * 15 14 13 36 36 H 1.07997 * 119.99066 * 0.02562 * 17 16 15 37 37 H 1.08002 * 120.00062 * 180.29544 * 26 19 18 38 38 H 1.08003 * 119.96407 * 179.70649 * 28 13 12 39 39 H 1.08004 * 120.03337 * 180.27031 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8908 2.3965 -1.2126 6 1 1.8907 2.3966 1.2124 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5045 0.1076 11 6 3.4571 -3.4393 0.0952 12 6 4.2023 -4.5969 0.2038 13 6 3.5685 -5.8203 0.3243 14 6 4.3848 -7.0816 0.4420 15 7 4.6555 -7.3580 1.8551 16 6 5.3960 -8.4772 2.2145 17 6 5.8810 -9.3375 1.2303 18 7 6.5879 -10.3965 1.5704 19 6 6.8295 -10.6508 2.8538 20 6 7.6201 -11.8466 3.2375 21 7 7.9463 -12.2256 4.4815 22 7 8.6304 -13.3147 4.3828 23 7 8.7503 -13.6217 3.1384 24 1 9.2229 -14.3959 2.7947 25 7 8.1391 -12.7425 2.4214 26 6 6.3450 -9.7915 3.8366 27 7 5.6413 -8.7273 3.4945 28 6 2.1873 -5.8891 0.3314 29 6 1.4365 -4.7345 0.2293 30 1 -0.4850 0.8400 -0.0004 31 1 3.9527 -2.4845 -0.0002 32 1 5.2812 -4.5469 0.1945 33 1 5.3274 -6.9555 -0.0905 34 1 3.8311 -7.9144 0.0085 35 1 4.3171 -6.7600 2.5397 36 1 5.6813 -9.1334 0.1887 37 1 6.5449 -9.9950 4.8783 38 1 1.6953 -6.8463 0.4209 39 1 0.3579 -4.7884 0.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:50 Heat of formation + Delta-G solvation = 181.189682 kcal Electronic energy + Delta-G solvation = -26090.108272 eV Core-core repulsion = 22037.116788 eV Total energy + Delta-G solvation = -4052.991484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.73128 -41.20491 -39.29292 -37.44344 -36.00494 -34.64546 -34.35570 -33.45751 -32.47645 -30.97782 -30.36153 -29.19796 -26.21299 -25.59978 -25.22062 -24.49009 -23.74505 -22.34703 -22.15803 -20.75538 -19.62502 -18.27133 -18.12360 -17.59429 -17.44190 -17.12176 -16.81274 -15.49168 -15.29962 -14.98296 -14.81694 -14.61910 -14.28860 -14.14031 -13.81692 -13.76467 -13.54934 -13.27669 -12.88220 -12.56099 -12.47610 -11.97722 -11.75355 -11.73212 -11.61451 -11.45065 -11.43096 -11.06116 -11.02412 -10.92418 -10.79009 -10.52454 -10.18533 -9.49729 -9.37714 -8.98855 -8.38398 -7.99796 -7.44104 -6.59631 -4.18523 0.36295 0.84780 0.95706 1.88146 1.94385 2.02900 2.04622 2.92888 3.05251 3.06549 3.11633 3.20219 3.61621 3.74361 3.85025 4.19849 4.29521 4.45232 4.49795 4.91243 4.95170 4.96320 5.02527 5.09333 5.16812 5.23162 5.31144 5.47690 5.54023 5.66358 5.91664 6.03544 6.07386 6.23682 6.47341 6.52111 6.70395 6.86350 7.03478 7.15460 7.22270 7.26581 7.27412 7.61775 7.70444 7.84797 7.86673 8.85611 9.52339 10.57597 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.035675 B = 0.001588 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.682071 B =17623.546767 C =17878.494168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.095 0.905 9 O -0.171 6.171 10 C 0.163 3.837 11 C -0.238 4.238 12 C -0.046 4.046 13 C -0.222 4.222 14 C 0.178 3.822 15 N -0.691 5.691 16 C 0.377 3.623 17 C -0.004 4.004 18 N -0.369 5.369 19 C 0.051 3.949 20 C 0.243 3.757 21 N -0.267 5.267 22 N -0.051 5.051 23 N -0.230 5.230 24 H 0.476 0.524 25 N -0.271 5.271 26 C 0.166 3.834 27 N -0.506 5.506 28 C -0.050 4.050 29 C -0.196 4.196 30 H 0.272 0.728 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.412 0.588 36 H 0.173 0.827 37 H 0.178 0.822 38 H 0.113 0.887 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.235 -21.355 3.439 25.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.073 6.073 10 C 0.108 3.892 11 C -0.257 4.257 12 C -0.065 4.065 13 C -0.223 4.223 14 C 0.056 3.944 15 N -0.320 5.320 16 C 0.134 3.866 17 C -0.177 4.177 18 N -0.083 5.083 19 C -0.091 4.091 20 C -0.039 4.039 21 N -0.142 5.142 22 N -0.046 5.046 23 N -0.077 5.077 24 H 0.330 0.670 25 N -0.124 5.124 26 C 0.001 3.999 27 N -0.229 5.229 28 C -0.069 4.069 29 C -0.215 4.215 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.127 0.873 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.250 0.750 36 H 0.190 0.810 37 H 0.195 0.805 38 H 0.131 0.869 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.028 -21.457 3.608 25.888 hybrid contribution 0.433 0.895 -0.317 1.044 sum 14.461 -20.562 3.291 25.353 Atomic orbital electron populations 1.70040 1.06041 1.27907 1.45046 1.25339 0.95875 0.99004 0.96210 0.85618 0.79159 0.80100 0.78402 1.19001 1.20005 1.19998 1.21426 0.91940 0.80641 1.53011 0.88766 1.83977 1.34628 1.11639 1.77035 1.19456 0.90336 0.88063 0.91393 1.21159 0.93771 0.99017 1.11767 1.20635 0.98390 0.91597 0.95900 1.19011 0.93466 0.93212 1.16627 1.20261 0.98701 0.95841 0.79628 1.45293 1.53685 1.23664 1.09375 1.19730 0.88505 0.88112 0.90220 1.23087 1.01370 0.92681 1.00603 1.67961 1.07344 1.15506 1.17467 1.18177 1.05313 0.94934 0.90713 1.22883 0.99581 0.95733 0.85665 1.76064 1.12202 1.05194 1.20696 1.78900 1.13963 1.09494 1.02210 1.47807 1.35484 1.21287 1.03086 0.67028 1.75150 1.12065 1.01504 1.23633 1.23380 0.88657 0.87063 1.00843 1.68171 1.17961 1.19971 1.16779 1.20520 0.92678 0.96911 0.96820 1.20222 0.99764 0.90223 1.11296 0.91822 0.85336 0.87315 0.91139 0.91094 0.75020 0.80989 0.80458 0.86875 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.12 13.67 55.48 0.76 -23.36 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.62 29.55 -169.99 -5.02 14.60 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 7 C -0.39 -10.46 9.49 30.89 0.29 -10.17 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.61 9.76 0.05 0.00 -4.61 16 10 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 11 C -0.24 -4.67 9.17 -39.40 -0.36 -5.03 16 12 C -0.05 -0.73 9.69 -39.61 -0.38 -1.12 16 13 C -0.22 -3.10 5.25 -104.58 -0.55 -3.65 16 14 C 0.18 1.84 5.02 -5.19 -0.03 1.81 16 15 N -0.69 -7.51 5.72 -61.46 -0.35 -7.86 16 16 C 0.38 4.28 7.66 -154.72 -1.19 3.09 16 17 C 0.00 -0.04 10.48 -17.12 -0.18 -0.22 16 18 N -0.37 -4.43 10.43 -9.41 -0.10 -4.53 16 19 C 0.05 0.59 6.75 -82.78 -0.56 0.03 16 20 C 0.24 2.71 8.04 -156.29 -1.26 1.46 16 21 N -0.27 -2.87 12.22 32.15 0.39 -2.48 16 22 N -0.05 -0.45 13.47 60.35 0.81 0.36 16 23 N -0.23 -1.53 7.90 60.35 0.48 -1.06 16 24 H 0.48 0.78 8.96 -340.36 -3.05 -2.27 16 25 N -0.27 -2.71 12.39 32.16 0.40 -2.32 16 26 C 0.17 1.79 10.87 -17.07 -0.19 1.61 16 27 N -0.51 -6.10 10.52 -11.99 -0.13 -6.22 16 28 C -0.05 -0.77 9.69 -39.61 -0.38 -1.15 16 29 C -0.20 -3.73 9.99 -39.39 -0.39 -4.13 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.13 2.57 5.64 -52.49 -0.30 2.27 16 32 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 33 H 0.07 0.64 7.88 -51.93 -0.41 0.23 16 34 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 35 H 0.41 4.78 8.59 -40.82 -0.35 4.43 16 36 H 0.17 1.42 6.71 -52.49 -0.35 1.07 16 37 H 0.18 1.54 7.87 -52.49 -0.41 1.13 16 38 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 39 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -32.06 352.42 -8.93 -40.99 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.96 Total: 4.29 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -5.53 Total: -13.12 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 2.26 Total: -47.46 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: 0.00 Total: -4.61 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.06 -8.93 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.182 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds