Wall clock time and date at job start Tue Mar 31 2020 22:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86807 * 119.99885 * 2 1 4 4 H 1.48493 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46986 * 299.99810 * 3 2 1 6 6 H 1.48500 * 109.47126 * 59.99540 * 3 2 1 7 7 C 1.38654 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99993 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99744 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99967 * 185.05420 * 9 7 2 11 11 C 1.38871 * 120.06697 * 354.46580 * 10 9 7 12 12 C 1.38099 * 119.93141 * 180.02562 * 11 10 9 13 13 C 1.38308 * 120.06739 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.92905 * 179.97438 * 13 12 11 15 15 N 1.46508 * 109.47304 * 89.99831 * 14 13 12 16 16 C 1.38924 * 120.00059 * 179.97438 * 15 14 13 17 17 C 1.39430 * 119.99093 * 359.97438 * 16 15 14 18 18 N 1.31795 * 120.01365 * 179.73964 * 17 16 15 19 19 C 1.33051 * 119.99515 * 0.55143 * 18 17 16 20 20 C 1.48390 * 120.00989 * 179.71628 * 19 18 17 21 21 N 1.34073 * 126.67713 * 179.68353 * 20 19 18 22 22 N 1.28993 * 107.26048 * 179.77591 * 21 20 19 23 23 N 1.28727 * 108.94995 * 0.43234 * 22 21 20 24 24 H 0.97002 * 125.33039 * 179.82646 * 23 22 21 25 25 N 1.28868 * 109.32935 * 359.55955 * 23 22 21 26 26 C 1.39252 * 119.97758 * 359.45204 * 19 18 17 27 27 N 1.32084 * 119.98606 * 0.26570 * 26 19 18 28 28 C 1.38298 * 120.13813 * 0.24807 * 13 12 11 29 29 C 1.38099 * 120.06716 * 359.45689 * 28 13 12 30 30 H 0.96999 * 120.00044 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.04061 * 359.97438 * 11 10 9 32 32 H 1.08004 * 119.97028 * 180.02562 * 12 11 10 33 33 H 1.08996 * 109.47401 * 329.99676 * 14 13 12 34 34 H 1.09002 * 109.46963 * 209.99722 * 14 13 12 35 35 H 0.96994 * 119.99558 * 0.02562 * 15 14 13 36 36 H 1.07997 * 119.99066 * 0.02562 * 17 16 15 37 37 H 1.08002 * 120.00062 * 180.29544 * 26 19 18 38 38 H 1.08003 * 119.96407 * 179.70649 * 28 13 12 39 39 H 1.08004 * 120.03337 * 180.27031 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8908 2.3965 -1.2126 6 1 1.8907 2.3966 1.2124 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5045 0.1076 11 6 3.4571 -3.4393 0.0952 12 6 4.2023 -4.5969 0.2038 13 6 3.5685 -5.8203 0.3243 14 6 4.3848 -7.0816 0.4420 15 7 4.6555 -7.3580 1.8551 16 6 5.3960 -8.4772 2.2145 17 6 5.8810 -9.3375 1.2303 18 7 6.5879 -10.3965 1.5704 19 6 6.8295 -10.6508 2.8538 20 6 7.6201 -11.8466 3.2375 21 7 7.9463 -12.2256 4.4815 22 7 8.6304 -13.3147 4.3828 23 7 8.7503 -13.6217 3.1384 24 1 9.2229 -14.3959 2.7947 25 7 8.1391 -12.7425 2.4214 26 6 6.3450 -9.7915 3.8366 27 7 5.6413 -8.7273 3.4945 28 6 2.1873 -5.8891 0.3314 29 6 1.4365 -4.7345 0.2293 30 1 -0.4850 0.8400 -0.0004 31 1 3.9527 -2.4845 -0.0002 32 1 5.2812 -4.5469 0.1945 33 1 5.3274 -6.9555 -0.0905 34 1 3.8311 -7.9144 0.0085 35 1 4.3171 -6.7600 2.5397 36 1 5.6813 -9.1334 0.1887 37 1 6.5449 -9.9950 4.8783 38 1 1.6953 -6.8463 0.4209 39 1 0.3579 -4.7884 0.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:49 Heat of formation + Delta-G solvation = 157.254179 kcal Electronic energy + Delta-G solvation = -26091.146194 eV Core-core repulsion = 22037.116788 eV Total energy + Delta-G solvation = -4054.029405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.43745 -42.03029 -40.82542 -38.80075 -37.10298 -35.37060 -35.23927 -34.33100 -34.18199 -32.08827 -31.78377 -30.24932 -27.69900 -26.64412 -26.31710 -25.27112 -24.65687 -23.63895 -23.15071 -22.11288 -20.30758 -19.87884 -19.15957 -18.75334 -18.40315 -18.14419 -17.60473 -16.58524 -16.52589 -16.17796 -16.04556 -15.79918 -15.52369 -15.36500 -15.04253 -14.99704 -14.52302 -14.35520 -14.32839 -13.85510 -13.52348 -13.28226 -13.01064 -12.76032 -12.57924 -12.52850 -12.36315 -12.32846 -12.22351 -12.16579 -12.09614 -11.84026 -11.21090 -10.95456 -10.82704 -10.20044 -9.79278 -9.02148 -8.81105 -8.48968 -6.17168 -0.43776 0.10517 0.19153 0.53278 0.60156 1.22952 1.35675 1.41553 1.43062 1.53347 2.03492 2.16526 2.44341 2.80054 2.84649 2.99832 3.17070 3.40624 3.49745 3.56707 3.71461 3.89333 4.05490 4.15855 4.19270 4.22140 4.48612 4.49930 4.57346 4.59333 4.66461 4.82313 5.05727 5.13809 5.15097 5.28348 5.54145 5.63907 5.67358 5.71078 5.74949 6.01691 6.18903 6.35368 6.42755 6.87452 6.96203 7.14276 7.75868 8.74032 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.035675 B = 0.001588 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.682071 B =17623.546767 C =17878.494168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.231 6.231 10 C 0.122 3.878 11 C -0.248 4.248 12 C -0.043 4.043 13 C -0.184 4.184 14 C 0.180 3.820 15 N -0.691 5.691 16 C 0.374 3.626 17 C 0.003 3.997 18 N -0.386 5.386 19 C 0.044 3.956 20 C 0.229 3.771 21 N -0.284 5.284 22 N -0.053 5.053 23 N -0.202 5.202 24 H 0.495 0.505 25 N -0.282 5.282 26 C 0.164 3.836 27 N -0.525 5.525 28 C -0.041 4.041 29 C -0.209 4.209 30 H 0.273 0.727 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.409 0.591 36 H 0.200 0.800 37 H 0.192 0.808 38 H 0.151 0.849 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.122 -24.146 3.245 29.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.137 6.137 10 C 0.071 3.929 11 C -0.268 4.268 12 C -0.061 4.061 13 C -0.185 4.185 14 C 0.058 3.942 15 N -0.320 5.320 16 C 0.131 3.869 17 C -0.171 4.171 18 N -0.101 5.101 19 C -0.098 4.098 20 C -0.052 4.052 21 N -0.158 5.158 22 N -0.048 5.048 23 N -0.053 5.053 24 H 0.354 0.646 25 N -0.135 5.135 26 C 0.000 4.000 27 N -0.248 5.248 28 C -0.059 4.059 29 C -0.229 4.229 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.161 0.839 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.246 0.754 36 H 0.216 0.784 37 H 0.209 0.791 38 H 0.169 0.831 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.979 -24.347 3.425 29.880 hybrid contribution -0.253 1.232 -0.228 1.278 sum 16.726 -23.115 3.197 28.711 Atomic orbital electron populations 1.70181 1.08024 1.28772 1.48675 1.26569 0.96812 1.02742 0.95829 0.84542 0.78322 0.74946 0.78505 1.17378 1.19390 1.19519 1.21869 0.92564 0.81341 1.53105 0.87876 1.83945 1.36195 1.12754 1.80841 1.20047 0.91744 0.87958 0.93195 1.21262 0.92987 1.00283 1.12223 1.21008 0.99952 0.90741 0.94439 1.19465 0.93315 0.94363 1.11346 1.20385 0.99649 0.94360 0.79821 1.45080 1.53970 1.23683 1.09274 1.19780 0.88658 0.88234 0.90265 1.23489 1.00221 0.91779 1.01578 1.67992 1.08102 1.16253 1.17713 1.18313 1.05389 0.95211 0.90859 1.22926 1.00228 0.96136 0.85957 1.76053 1.12941 1.05889 1.20874 1.78844 1.13868 1.09171 1.02872 1.47844 1.34067 1.21053 1.02308 0.64620 1.75094 1.12431 1.01887 1.24064 1.23556 0.88302 0.86641 1.01462 1.68146 1.18573 1.20559 1.17517 1.20948 0.93300 0.96939 0.94728 1.20484 1.00085 0.90603 1.11707 0.91829 0.86498 0.83934 0.88600 0.88340 0.75423 0.78364 0.79147 0.83101 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.20 13.67 21.61 0.30 -54.91 16 2 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 3 Si 1.02 41.72 29.55 68.60 2.03 43.75 16 4 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.41 -23.22 9.49 67.92 0.64 -22.58 16 8 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 9 O -0.23 -13.39 9.76 -22.74 -0.22 -13.61 16 10 C 0.12 5.63 6.65 22.58 0.15 5.78 16 11 C -0.25 -9.77 9.17 22.39 0.21 -9.56 16 12 C -0.04 -1.22 9.69 22.25 0.22 -1.01 16 13 C -0.18 -4.35 5.25 -19.83 -0.10 -4.46 16 14 C 0.18 2.68 5.02 85.63 0.43 3.11 16 15 N -0.69 -11.97 5.72 -348.36 -1.99 -13.96 16 16 C 0.37 7.13 7.66 133.07 1.02 8.15 16 17 C 0.00 0.05 10.48 84.99 0.89 0.94 16 18 N -0.39 -8.21 10.43 -183.67 -1.92 -10.13 16 19 C 0.04 0.92 6.75 41.91 0.28 1.21 16 20 C 0.23 4.73 8.04 137.34 1.10 5.83 16 21 N -0.28 -5.68 12.22 -52.21 -0.64 -6.32 16 22 N -0.05 -0.84 13.47 37.02 0.50 -0.34 16 23 N -0.20 -2.24 7.90 37.02 0.29 -1.95 16 24 H 0.49 0.40 8.96 -347.53 -3.12 -2.71 16 25 N -0.28 -5.06 12.39 -52.15 -0.65 -5.70 16 26 C 0.16 3.26 10.87 84.90 0.92 4.18 16 27 N -0.53 -11.38 10.52 -191.83 -2.02 -13.40 16 28 C -0.04 -1.12 9.69 22.25 0.22 -0.90 16 29 C -0.21 -8.03 9.99 22.39 0.22 -7.81 16 30 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.12 4.80 5.64 -2.91 -0.02 4.78 16 32 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.10 1.09 7.88 -2.39 -0.02 1.07 16 34 H 0.10 1.07 7.87 -2.39 -0.02 1.06 16 35 H 0.41 7.96 8.59 -92.71 -0.80 7.17 16 36 H 0.20 2.19 6.71 -2.91 -0.02 2.17 16 37 H 0.19 3.06 7.87 -2.91 -0.02 3.03 16 38 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -76.11 352.42 -0.39 -76.50 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -2.74 Total: 17.93 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 6.67 Total: -17.86 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -6.12 Total: -106.70 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.22 Total: -13.61 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -76.11 -0.39 -76.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.755 kcal (2) G-P(sol) polarization free energy of solvation -76.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds