Wall clock time and date at job start Tue Mar 31 2020 22:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.38993 * 119.99660 * 180.02562 * 15 14 13 17 17 C 1.39396 * 120.03854 * 359.72307 * 16 15 14 18 18 N 1.31974 * 120.10346 * 179.70333 * 17 16 15 19 19 C 1.32125 * 120.18414 * 0.57576 * 18 17 16 20 20 C 1.39235 * 120.06260 * 359.70812 * 19 18 17 21 21 C 1.48409 * 120.04966 * 179.97438 * 20 19 18 22 22 N 1.34068 * 126.67278 * 180.02562 * 21 20 19 23 23 N 1.28994 * 107.26534 * 179.97438 * 22 21 20 24 24 N 1.28731 * 108.94681 * 0.02562 * 23 22 21 25 25 H 0.97004 * 125.33641 * 180.02562 * 24 23 22 26 26 N 1.28869 * 109.32342 * 359.74802 * 24 23 22 27 27 N 1.32538 * 120.03040 * 180.02562 * 16 15 14 28 28 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 29 29 C 1.38101 * 120.07230 * 0.04164 * 28 13 12 30 30 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 33 33 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 34 34 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 35 35 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 36 36 H 1.08005 * 119.94574 * 0.02562 * 17 16 15 37 37 H 1.07995 * 119.97135 * 179.67827 * 19 18 17 38 38 H 1.07999 * 119.96698 * 180.02562 * 28 13 12 39 39 H 1.07992 * 120.03608 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3827 -8.7912 1.0378 17 6 5.8739 -9.4507 -0.0877 18 7 6.5811 -10.5565 0.0491 19 6 6.8171 -11.0496 1.2520 20 6 6.3250 -10.4000 2.3809 21 6 6.5898 -10.9543 3.7319 22 7 6.1822 -10.4418 4.9017 23 7 6.6182 -11.2201 5.8334 24 7 7.2755 -12.1878 5.2961 25 1 7.7058 -12.9103 5.7796 26 7 7.2673 -12.0493 4.0149 27 7 5.6164 -9.2822 2.2465 28 6 4.2024 -4.5970 -0.2043 29 6 3.4573 -3.4394 -0.0951 30 1 -0.4850 0.8400 0.0004 31 1 0.3579 -4.7892 -0.2301 32 1 1.6954 -6.8451 -0.4339 33 1 3.8358 -7.8156 -1.0337 34 1 5.3321 -6.8566 -0.9342 35 1 4.2983 -7.1670 1.6758 36 1 5.6798 -9.0532 -1.0730 37 1 7.3919 -11.9575 1.3597 38 1 5.2812 -4.5470 -0.1947 39 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:53 Heat of formation + Delta-G solvation = 184.114242 kcal Electronic energy + Delta-G solvation = -26297.110783 eV Core-core repulsion = 22244.246117 eV Total energy + Delta-G solvation = -4052.864666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.84015 -41.19492 -39.25056 -37.37563 -35.84253 -35.07514 -34.32480 -33.38877 -32.41986 -30.91479 -30.32071 -29.07865 -26.32456 -25.77758 -25.16553 -24.65308 -23.62906 -22.24616 -22.11441 -20.71137 -19.68901 -18.23837 -18.08892 -17.54043 -17.42747 -17.07663 -16.79051 -15.72130 -15.43676 -15.02976 -14.79362 -14.59342 -14.37374 -14.16742 -13.74168 -13.69975 -13.30834 -13.06802 -12.83920 -12.64903 -12.38095 -11.93124 -11.79165 -11.71127 -11.66317 -11.51027 -11.41517 -11.33791 -10.97676 -10.88018 -10.75422 -10.51282 -9.95655 -9.46791 -9.38858 -8.95301 -8.34191 -7.99883 -7.39958 -6.56508 -4.15299 0.13626 0.81006 1.10040 1.75979 1.95310 1.95851 2.08544 2.82811 3.06906 3.07834 3.12732 3.27900 3.61718 3.78624 3.87759 4.16136 4.28378 4.43772 4.56752 4.89601 4.96382 4.98314 5.00154 5.13264 5.16024 5.19548 5.22148 5.52751 5.58762 5.70757 5.95661 5.98865 6.07422 6.27796 6.51792 6.56685 6.74509 6.90065 7.07462 7.19718 7.27010 7.30944 7.34556 7.65894 7.71778 7.81575 7.87968 8.88639 9.55858 10.60757 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.001825 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.960067 B =15342.295709 C =16068.283800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.163 3.837 11 C -0.196 4.196 12 C -0.050 4.050 13 C -0.220 4.220 14 C 0.181 3.819 15 N -0.699 5.699 16 C 0.370 3.630 17 C 0.006 3.994 18 N -0.397 5.397 19 C 0.011 3.989 20 C 0.206 3.794 21 C 0.224 3.776 22 N -0.235 5.235 23 N -0.051 5.051 24 N -0.225 5.225 25 H 0.477 0.523 26 N -0.279 5.279 27 N -0.477 5.477 28 C -0.047 4.047 29 C -0.238 4.238 30 H 0.272 0.728 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.412 0.588 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.109 0.891 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.258 -22.145 3.803 26.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.073 6.073 10 C 0.108 3.892 11 C -0.215 4.215 12 C -0.069 4.069 13 C -0.221 4.221 14 C 0.059 3.941 15 N -0.330 5.330 16 C 0.127 3.873 17 C -0.166 4.166 18 N -0.110 5.110 19 C -0.152 4.152 20 C 0.062 3.938 21 C -0.057 4.057 22 N -0.108 5.108 23 N -0.046 5.046 24 N -0.071 5.071 25 H 0.332 0.668 26 N -0.132 5.132 27 N -0.201 5.201 28 C -0.065 4.065 29 C -0.257 4.257 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.249 0.751 36 H 0.189 0.811 37 H 0.189 0.811 38 H 0.127 0.873 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.719 -21.817 4.280 26.125 hybrid contribution 0.599 0.656 0.302 0.938 sum 14.318 -21.161 4.582 25.957 Atomic orbital electron populations 1.70032 1.06028 1.27971 1.45096 1.25338 0.95878 0.98993 0.96262 0.85683 0.78960 0.79832 0.78817 1.19755 1.20153 1.19097 1.21370 0.91898 0.80667 1.53041 0.88844 1.83976 1.34590 1.11615 1.77139 1.19457 0.90335 0.88056 0.91399 1.20214 0.99740 0.90272 1.11297 1.20520 0.92697 0.96867 0.96845 1.19018 0.93466 0.93062 1.16574 1.20201 0.98581 0.93208 0.82098 1.45188 1.54740 1.22787 1.10321 1.19355 0.90191 0.88478 0.89236 1.23334 0.99821 0.94183 0.99229 1.68311 1.08836 1.09246 1.24560 1.23176 1.02970 1.02062 0.86955 1.18331 0.95762 0.91704 0.88003 1.22954 0.97931 0.90658 0.94182 1.76325 1.17997 1.20388 0.96119 1.79046 1.06869 0.95859 1.22813 1.47788 1.35326 1.21315 1.02702 0.66810 1.74873 1.21578 1.19549 0.97200 1.67677 1.16298 1.11868 1.24281 1.20630 0.98390 0.91655 0.95863 1.21159 0.93767 0.99029 1.11771 0.91805 0.86315 0.86887 0.91304 0.91353 0.75083 0.81080 0.81090 0.87328 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.40 13.67 55.48 0.76 -23.64 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.86 29.55 -169.99 -5.02 14.84 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.39 -10.58 9.49 30.89 0.29 -10.28 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.68 9.76 0.05 0.00 -4.68 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.20 -3.82 9.99 -39.39 -0.39 -4.22 16 12 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 13 C -0.22 -3.18 5.25 -104.58 -0.55 -3.73 16 14 C 0.18 1.96 5.02 -5.19 -0.03 1.93 16 15 N -0.70 -8.11 5.72 -61.49 -0.35 -8.46 16 16 C 0.37 4.43 7.66 -154.81 -1.19 3.24 16 17 C 0.01 0.06 10.48 -17.06 -0.18 -0.12 16 18 N -0.40 -4.42 10.48 -12.62 -0.13 -4.55 16 19 C 0.01 0.12 10.87 -17.06 -0.19 -0.07 16 20 C 0.21 2.46 6.76 -82.79 -0.56 1.90 16 21 C 0.22 2.56 8.05 -156.29 -1.26 1.30 16 22 N -0.24 -2.99 12.53 32.15 0.40 -2.58 16 23 N -0.05 -0.49 13.47 60.35 0.81 0.32 16 24 N -0.23 -1.38 7.90 60.35 0.48 -0.91 16 25 H 0.48 0.42 8.96 -340.35 -3.05 -2.63 16 26 N -0.28 -2.37 12.07 32.17 0.39 -1.98 16 27 N -0.48 -6.38 10.48 -8.78 -0.09 -6.48 16 28 C -0.05 -0.76 9.69 -39.61 -0.38 -1.14 16 29 C -0.24 -4.78 9.17 -39.39 -0.36 -5.14 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 34 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 35 H 0.41 5.20 8.59 -40.82 -0.35 4.85 16 36 H 0.17 1.39 6.71 -52.48 -0.35 1.04 16 37 H 0.17 1.37 7.87 -52.49 -0.41 0.95 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -32.70 352.44 -8.94 -41.64 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.96 Total: 4.25 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -5.53 Total: -13.08 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 2.26 Total: -48.28 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: 0.00 Total: -4.68 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.70 -8.94 -41.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.750 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds