Wall clock time and date at job start Tue Mar 31 2020 22:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.38993 * 119.99660 * 180.02562 * 15 14 13 17 17 C 1.39396 * 120.03854 * 359.72307 * 16 15 14 18 18 N 1.31974 * 120.10346 * 179.70333 * 17 16 15 19 19 C 1.32125 * 120.18414 * 0.57576 * 18 17 16 20 20 C 1.39235 * 120.06260 * 359.70812 * 19 18 17 21 21 C 1.48409 * 120.04966 * 179.97438 * 20 19 18 22 22 N 1.34068 * 126.67278 * 180.02562 * 21 20 19 23 23 N 1.28994 * 107.26534 * 179.97438 * 22 21 20 24 24 N 1.28731 * 108.94681 * 0.02562 * 23 22 21 25 25 H 0.97004 * 125.33641 * 180.02562 * 24 23 22 26 26 N 1.28869 * 109.32342 * 359.74802 * 24 23 22 27 27 N 1.32538 * 120.03040 * 180.02562 * 16 15 14 28 28 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 29 29 C 1.38101 * 120.07230 * 0.04164 * 28 13 12 30 30 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 33 33 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 34 34 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 35 35 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 36 36 H 1.08005 * 119.94574 * 0.02562 * 17 16 15 37 37 H 1.07995 * 119.97135 * 179.67827 * 19 18 17 38 38 H 1.07999 * 119.96698 * 180.02562 * 28 13 12 39 39 H 1.07992 * 120.03608 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3827 -8.7912 1.0378 17 6 5.8739 -9.4507 -0.0877 18 7 6.5811 -10.5565 0.0491 19 6 6.8171 -11.0496 1.2520 20 6 6.3250 -10.4000 2.3809 21 6 6.5898 -10.9543 3.7319 22 7 6.1822 -10.4418 4.9017 23 7 6.6182 -11.2201 5.8334 24 7 7.2755 -12.1878 5.2961 25 1 7.7058 -12.9103 5.7796 26 7 7.2673 -12.0493 4.0149 27 7 5.6164 -9.2822 2.2465 28 6 4.2024 -4.5970 -0.2043 29 6 3.4573 -3.4394 -0.0951 30 1 -0.4850 0.8400 0.0004 31 1 0.3579 -4.7892 -0.2301 32 1 1.6954 -6.8451 -0.4339 33 1 3.8358 -7.8156 -1.0337 34 1 5.3321 -6.8566 -0.9342 35 1 4.2983 -7.1670 1.6758 36 1 5.6798 -9.0532 -1.0730 37 1 7.3919 -11.9575 1.3597 38 1 5.2812 -4.5470 -0.1947 39 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:52 Heat of formation + Delta-G solvation = 159.327189 kcal Electronic energy + Delta-G solvation = -26298.185630 eV Core-core repulsion = 22244.246117 eV Total energy + Delta-G solvation = -4053.939513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.55819 -42.02736 -40.81973 -38.77781 -36.97214 -35.84635 -35.09278 -34.44524 -34.07475 -32.01971 -31.77561 -30.17976 -27.66158 -26.98572 -26.13105 -25.69702 -24.43028 -23.63617 -23.12990 -22.06204 -20.39193 -19.87280 -19.13702 -18.75969 -18.25183 -18.20706 -17.57902 -16.69802 -16.56363 -16.30949 -16.05738 -15.96418 -15.57427 -15.38919 -15.14056 -15.02581 -14.49155 -14.34281 -13.91766 -13.78273 -13.50083 -13.37512 -12.99874 -12.71054 -12.56073 -12.50599 -12.45740 -12.38688 -12.26321 -12.22538 -12.11679 -12.09850 -11.19737 -10.81569 -10.74525 -10.22223 -9.78937 -9.01447 -8.83397 -8.48702 -6.16866 -0.64252 0.08550 0.26436 0.53994 0.60403 1.14164 1.26033 1.35281 1.43651 1.52295 1.99295 2.16781 2.43935 2.79808 2.83927 3.01746 3.19228 3.39573 3.49820 3.50605 3.75103 3.89663 4.06137 4.12919 4.16595 4.19824 4.38440 4.47427 4.50156 4.58728 4.69030 4.82809 5.06167 5.14948 5.21549 5.28805 5.54462 5.55999 5.70334 5.71955 5.75932 6.01750 6.19382 6.38637 6.48381 6.88011 6.96194 7.05773 7.76088 8.74175 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.001825 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.960067 B =15342.295709 C =16068.283800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.231 6.231 10 C 0.121 3.879 11 C -0.210 4.210 12 C -0.041 4.041 13 C -0.183 4.183 14 C 0.184 3.816 15 N -0.703 5.703 16 C 0.362 3.638 17 C 0.015 3.985 18 N -0.408 5.408 19 C 0.020 3.980 20 C 0.191 3.809 21 C 0.209 3.791 22 N -0.277 5.277 23 N -0.058 5.058 24 N -0.191 5.191 25 H 0.498 0.502 26 N -0.265 5.265 27 N -0.506 5.506 28 C -0.044 4.044 29 C -0.249 4.249 30 H 0.273 0.727 31 H 0.112 0.888 32 H 0.151 0.849 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.406 0.594 36 H 0.200 0.800 37 H 0.193 0.807 38 H 0.143 0.857 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.446 -25.266 3.082 30.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.137 6.137 10 C 0.070 3.930 11 C -0.229 4.229 12 C -0.060 4.060 13 C -0.184 4.184 14 C 0.062 3.938 15 N -0.334 5.334 16 C 0.120 3.880 17 C -0.156 4.156 18 N -0.121 5.121 19 C -0.142 4.142 20 C 0.049 3.951 21 C -0.073 4.073 22 N -0.149 5.149 23 N -0.053 5.053 24 N -0.043 5.043 25 H 0.358 0.642 26 N -0.119 5.119 27 N -0.231 5.231 28 C -0.062 4.062 29 C -0.268 4.268 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.168 0.832 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.242 0.758 36 H 0.217 0.783 37 H 0.210 0.790 38 H 0.160 0.840 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.968 -25.035 3.578 30.454 hybrid contribution -0.172 1.075 0.549 1.219 sum 16.797 -23.960 4.126 29.550 Atomic orbital electron populations 1.70178 1.08019 1.28840 1.48647 1.26592 0.96844 1.02787 0.95851 0.84593 0.77816 0.74601 0.79275 1.18725 1.19747 1.17663 1.21824 0.92546 0.81351 1.53163 0.87928 1.83944 1.36159 1.12733 1.80882 1.20041 0.91734 0.87957 0.93234 1.20478 1.00062 0.90649 1.11730 1.20947 0.93329 0.96879 0.94819 1.19488 0.93333 0.94317 1.11254 1.20326 0.99543 0.91635 0.82286 1.44989 1.55268 1.23005 1.10109 1.19445 0.90610 0.88610 0.89368 1.23750 0.98480 0.93510 0.99839 1.68401 1.09325 1.09656 1.24672 1.23480 1.02121 1.02236 0.86355 1.18504 0.96190 0.91728 0.88707 1.23027 0.98820 0.91446 0.93986 1.76293 1.19653 1.21960 0.96984 1.78976 1.07470 0.96436 1.22450 1.47865 1.33447 1.20804 1.02193 0.64153 1.74841 1.20783 1.18446 0.97872 1.67588 1.17231 1.12856 1.25470 1.21005 0.99944 0.90829 0.94433 1.21266 0.92993 1.00291 1.12227 0.91821 0.87016 0.83156 0.88489 0.88754 0.75845 0.78309 0.79012 0.83975 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.83 13.67 21.62 0.30 -55.54 16 2 C -0.02 -1.29 5.49 84.84 0.47 -0.82 16 3 Si 1.02 42.26 29.55 68.60 2.03 44.29 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.41 -23.55 9.49 67.92 0.64 -22.91 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 9 O -0.23 -13.59 9.76 -22.72 -0.22 -13.81 16 10 C 0.12 5.75 6.65 22.58 0.15 5.90 16 11 C -0.21 -8.30 9.99 22.39 0.22 -8.08 16 12 C -0.04 -1.19 9.69 22.25 0.22 -0.97 16 13 C -0.18 -4.58 5.25 -19.84 -0.10 -4.69 16 14 C 0.18 2.97 5.02 85.63 0.43 3.40 16 15 N -0.70 -13.62 5.72 -348.45 -1.99 -15.61 16 16 C 0.36 7.51 7.66 133.09 1.02 8.53 16 17 C 0.02 0.26 10.48 84.95 0.89 1.15 16 18 N -0.41 -7.66 10.48 -193.83 -2.03 -9.69 16 19 C 0.02 0.36 10.87 84.89 0.92 1.29 16 20 C 0.19 4.23 6.76 41.91 0.28 4.51 16 21 C 0.21 4.47 8.05 137.35 1.11 5.57 16 22 N -0.28 -6.82 12.53 -52.20 -0.65 -7.48 16 23 N -0.06 -1.06 13.47 37.02 0.50 -0.56 16 24 N -0.19 -1.93 7.90 37.02 0.29 -1.64 16 25 H 0.50 -0.47 8.96 -347.52 -3.12 -3.58 16 26 N -0.26 -3.92 12.07 -52.15 -0.63 -4.55 16 27 N -0.51 -12.67 10.48 -181.68 -1.90 -14.57 16 28 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 29 C -0.25 -10.06 9.17 22.39 0.21 -9.86 16 30 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 31 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.10 1.15 7.87 -2.39 -0.02 1.14 16 34 H 0.09 1.17 7.89 -2.39 -0.02 1.15 16 35 H 0.41 9.11 8.59 -92.71 -0.80 8.31 16 36 H 0.20 2.10 6.71 -2.91 -0.02 2.08 16 37 H 0.19 2.48 7.87 -2.91 -0.02 2.46 16 38 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 39 H 0.12 4.92 5.64 -2.91 -0.02 4.90 16 Total: -1.00 -78.57 352.44 -0.39 -78.96 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -2.74 Total: 18.26 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 6.67 Total: -18.06 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -6.13 Total: -109.64 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.22 Total: -13.81 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -78.57 -0.39 -78.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.290 kcal (2) G-P(sol) polarization free energy of solvation -78.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds