Wall clock time and date at job start Tue Mar 31 2020 22:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.39084 * 119.99829 * 180.02562 * 15 14 13 17 17 C 1.39282 * 120.10277 * 359.72478 * 16 15 14 18 18 C 1.39653 * 117.77487 * 179.74003 * 17 16 15 19 19 C 1.48471 * 121.10020 * 180.24970 * 18 17 16 20 20 N 1.34042 * 126.67161 * 359.97438 * 19 18 17 21 21 N 1.28990 * 107.26827 * 179.83030 * 20 19 18 22 22 N 1.28737 * 108.93998 * 0.43047 * 21 20 19 23 23 H 0.97000 * 125.33879 * 179.69942 * 22 21 20 24 24 N 1.28869 * 109.31680 * 359.72670 * 22 21 20 25 25 C 1.39875 * 117.80237 * 0.52257 * 18 17 16 26 26 N 1.31667 * 119.84418 * 359.73545 * 25 18 17 27 27 N 1.28285 * 122.41349 * 359.97438 * 26 25 18 28 28 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 29 29 C 1.38101 * 120.07230 * 0.04164 * 28 13 12 30 30 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 33 33 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 34 34 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 35 35 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 36 36 H 1.07999 * 121.11409 * 359.97438 * 17 16 15 37 37 H 1.07997 * 120.07918 * 179.70296 * 25 18 17 38 38 H 1.07999 * 119.96698 * 180.02562 * 28 13 12 39 39 H 1.07992 * 120.03608 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3832 -8.7919 1.0380 17 6 5.8747 -9.4520 -0.0857 18 6 6.6161 -10.6180 0.1169 19 6 7.1794 -11.3773 -1.0279 20 7 7.0623 -11.0702 -2.3274 21 7 7.6947 -11.9759 -2.9934 22 7 8.1890 -12.8322 -2.1689 23 1 8.7069 -13.6144 -2.4156 24 7 7.8873 -12.4873 -0.9644 25 6 6.8055 -11.0502 1.4336 26 7 6.2947 -10.3579 2.4304 27 7 5.6183 -9.2836 2.2459 28 6 4.2024 -4.5970 -0.2043 29 6 3.4573 -3.4394 -0.0951 30 1 -0.4850 0.8400 0.0004 31 1 0.3579 -4.7892 -0.2301 32 1 1.6954 -6.8451 -0.4339 33 1 3.8358 -7.8156 -1.0337 34 1 5.3321 -6.8566 -0.9342 35 1 4.2983 -7.1670 1.6758 36 1 5.6918 -9.0727 -1.0802 37 1 7.3689 -11.9499 1.6323 38 1 5.2812 -4.5470 -0.1947 39 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:37 Heat of formation + Delta-G solvation = 191.089899 kcal Electronic energy + Delta-G solvation = -26367.664843 eV Core-core repulsion = 22315.102665 eV Total energy + Delta-G solvation = -4052.562178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.98318 -41.11208 -39.24675 -37.39481 -35.85059 -35.31375 -34.46719 -32.52262 -32.12285 -31.60727 -30.32013 -29.21471 -26.18572 -25.92978 -25.39192 -24.82893 -23.44088 -22.35133 -22.11038 -20.69174 -19.84210 -18.18982 -18.06329 -17.66126 -17.58486 -17.05377 -16.65886 -15.46962 -15.26946 -15.09187 -14.79691 -14.57624 -14.52499 -14.08003 -13.73818 -13.69695 -13.49019 -13.18919 -12.84597 -12.83078 -12.37771 -12.11465 -11.79221 -11.76203 -11.72068 -11.49172 -11.29738 -11.00687 -10.94216 -10.83459 -10.70465 -10.50726 -9.92595 -9.86320 -9.46374 -8.94711 -8.33768 -8.15014 -7.39142 -6.56005 -4.14803 0.01455 0.66655 0.96440 1.70516 1.87367 1.95580 2.09149 2.96885 3.05429 3.08116 3.12534 3.13237 3.49981 3.63176 3.88176 4.22510 4.34801 4.42974 4.60973 4.65157 4.81577 4.97695 4.99610 5.01933 5.14996 5.23416 5.32953 5.54415 5.59443 5.69833 5.72782 5.83040 5.84684 6.07986 6.28528 6.53946 6.74340 6.82627 6.92089 7.08742 7.20753 7.31322 7.47602 7.61208 7.66506 7.88487 8.68189 8.89163 9.56448 10.61277 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.001805 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.885552 B =15504.966814 C =15926.650373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.163 3.837 11 C -0.196 4.196 12 C -0.051 4.051 13 C -0.219 4.219 14 C 0.180 3.820 15 N -0.699 5.699 16 C 0.351 3.649 17 C -0.138 4.138 18 C 0.024 3.976 19 C 0.217 3.783 20 N -0.257 5.257 21 N -0.043 5.043 22 N -0.223 5.223 23 H 0.478 0.522 24 N -0.279 5.279 25 C 0.008 3.992 26 N -0.193 5.193 27 N -0.301 5.301 28 C -0.047 4.047 29 C -0.238 4.238 30 H 0.272 0.728 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.414 0.586 36 H 0.159 0.841 37 H 0.174 0.826 38 H 0.109 0.891 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.253 -22.913 -3.684 27.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.073 6.073 10 C 0.107 3.893 11 C -0.215 4.215 12 C -0.069 4.069 13 C -0.220 4.220 14 C 0.057 3.943 15 N -0.331 5.331 16 C 0.108 3.892 17 C -0.175 4.175 18 C 0.010 3.990 19 C -0.064 4.064 20 N -0.130 5.130 21 N -0.039 5.039 22 N -0.070 5.070 23 H 0.333 0.667 24 N -0.132 5.132 25 C -0.164 4.164 26 N -0.033 5.033 27 N -0.154 5.154 28 C -0.066 4.066 29 C -0.257 4.257 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.252 0.748 36 H 0.177 0.823 37 H 0.191 0.809 38 H 0.127 0.873 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.652 -22.527 -2.877 27.026 hybrid contribution 0.853 0.406 -1.091 1.443 sum 15.505 -22.121 -3.968 27.304 Atomic orbital electron populations 1.70032 1.06025 1.27960 1.45129 1.25336 0.95876 0.98986 0.96268 0.85684 0.78957 0.79841 0.78815 1.19764 1.20155 1.19098 1.21369 0.91897 0.80671 1.53037 0.88849 1.83977 1.34580 1.11608 1.77173 1.19454 0.90331 0.88054 0.91412 1.20213 0.99734 0.90263 1.11295 1.20519 0.92688 0.96874 0.96862 1.19016 0.93464 0.93047 1.16483 1.20202 0.98567 0.93227 0.82264 1.45081 1.54937 1.22774 1.10296 1.20037 0.89905 0.88536 0.90698 1.21869 0.99532 0.95332 1.00797 1.18058 0.97152 0.93725 0.90059 1.23298 0.98690 0.92094 0.92332 1.76151 1.16269 1.18313 1.02291 1.78992 1.07762 0.97059 1.20050 1.47785 1.36036 1.22109 1.01038 0.66708 1.74926 1.17457 1.15353 1.05428 1.24010 1.02173 1.02285 0.87927 1.72802 1.02658 0.99447 1.28417 1.72926 1.15257 1.08156 1.19051 1.20630 0.98390 0.91647 0.95886 1.21158 0.93766 0.99014 1.11767 0.91813 0.86308 0.86898 0.91425 0.91470 0.74826 0.82330 0.80876 0.87337 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.42 13.67 55.48 0.76 -23.66 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.87 29.55 -169.99 -5.02 14.85 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.39 -10.58 9.49 30.89 0.29 -10.29 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 9 O -0.17 -4.69 9.76 0.05 0.00 -4.69 16 10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 11 C -0.20 -3.83 9.99 -39.39 -0.39 -4.23 16 12 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 13 C -0.22 -3.22 5.25 -104.58 -0.55 -3.77 16 14 C 0.18 2.04 5.04 -5.19 -0.03 2.02 16 15 N -0.70 -8.19 5.72 -61.50 -0.35 -8.54 16 16 C 0.35 4.24 7.74 -154.78 -1.20 3.04 16 17 C -0.14 -1.45 9.10 -38.67 -0.35 -1.80 16 18 C 0.02 0.24 5.92 -104.54 -0.62 -0.38 16 19 C 0.22 2.04 7.98 -156.31 -1.25 0.79 16 20 N -0.26 -2.59 12.37 32.16 0.40 -2.19 16 21 N -0.04 -0.35 13.47 60.35 0.81 0.46 16 22 N -0.22 -1.12 7.90 60.35 0.48 -0.64 16 23 H 0.48 0.01 8.96 -340.36 -3.05 -3.05 16 24 N -0.28 -2.07 12.18 32.17 0.39 -1.68 16 25 C 0.01 0.08 11.02 -17.01 -0.19 -0.11 16 26 N -0.19 -2.48 11.48 30.77 0.35 -2.13 16 27 N -0.30 -4.13 11.52 31.20 0.36 -3.77 16 28 C -0.05 -0.77 9.69 -39.61 -0.38 -1.15 16 29 C -0.24 -4.79 9.17 -39.39 -0.36 -5.15 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 32 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 34 H 0.07 0.70 7.91 -51.93 -0.41 0.28 16 35 H 0.41 5.10 8.59 -40.82 -0.35 4.75 16 36 H 0.16 1.47 6.80 -52.49 -0.36 1.12 16 37 H 0.17 1.31 7.97 -52.49 -0.42 0.90 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -32.33 352.62 -8.24 -40.57 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.97 Total: 3.90 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -5.76 Total: -17.80 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 3.20 Total: -42.14 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: 0.00 Total: -4.69 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.33 -8.24 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.664 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds