Wall clock time and date at job start Tue Mar 31 2020 22:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.39084 * 119.99829 * 180.02562 * 15 14 13 17 17 C 1.39282 * 120.10277 * 359.72478 * 16 15 14 18 18 C 1.39653 * 117.77487 * 179.74003 * 17 16 15 19 19 C 1.48471 * 121.10020 * 180.24970 * 18 17 16 20 20 N 1.34042 * 126.67161 * 359.97438 * 19 18 17 21 21 N 1.28990 * 107.26827 * 179.83030 * 20 19 18 22 22 N 1.28737 * 108.93998 * 0.43047 * 21 20 19 23 23 H 0.97000 * 125.33879 * 179.69942 * 22 21 20 24 24 N 1.28869 * 109.31680 * 359.72670 * 22 21 20 25 25 C 1.39875 * 117.80237 * 0.52257 * 18 17 16 26 26 N 1.31667 * 119.84418 * 359.73545 * 25 18 17 27 27 N 1.28285 * 122.41349 * 359.97438 * 26 25 18 28 28 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 29 29 C 1.38101 * 120.07230 * 0.04164 * 28 13 12 30 30 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 33 33 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 34 34 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 35 35 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 36 36 H 1.07999 * 121.11409 * 359.97438 * 17 16 15 37 37 H 1.07997 * 120.07918 * 179.70296 * 25 18 17 38 38 H 1.07999 * 119.96698 * 180.02562 * 28 13 12 39 39 H 1.07992 * 120.03608 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3832 -8.7919 1.0380 17 6 5.8747 -9.4520 -0.0857 18 6 6.6161 -10.6180 0.1169 19 6 7.1794 -11.3773 -1.0279 20 7 7.0623 -11.0702 -2.3274 21 7 7.6947 -11.9759 -2.9934 22 7 8.1890 -12.8322 -2.1689 23 1 8.7069 -13.6144 -2.4156 24 7 7.8873 -12.4873 -0.9644 25 6 6.8055 -11.0502 1.4336 26 7 6.2947 -10.3579 2.4304 27 7 5.6183 -9.2836 2.2459 28 6 4.2024 -4.5970 -0.2043 29 6 3.4573 -3.4394 -0.0951 30 1 -0.4850 0.8400 0.0004 31 1 0.3579 -4.7892 -0.2301 32 1 1.6954 -6.8451 -0.4339 33 1 3.8358 -7.8156 -1.0337 34 1 5.3321 -6.8566 -0.9342 35 1 4.2983 -7.1670 1.6758 36 1 5.6918 -9.0727 -1.0802 37 1 7.3689 -11.9499 1.6323 38 1 5.2812 -4.5470 -0.1947 39 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:37 Heat of formation + Delta-G solvation = 167.781465 kcal Electronic energy + Delta-G solvation = -26368.675573 eV Core-core repulsion = 22315.102665 eV Total energy + Delta-G solvation = -4053.572908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.57420 -41.97092 -40.82688 -38.80663 -37.02587 -35.99550 -35.10965 -34.34899 -32.85047 -32.73796 -31.80609 -30.42225 -27.67166 -26.80610 -26.51974 -25.69666 -24.35017 -23.63990 -23.11484 -22.08529 -20.46045 -19.86906 -19.06992 -18.72748 -18.36981 -18.24121 -17.44214 -16.58966 -16.50238 -16.16280 -16.09715 -16.02379 -15.52400 -15.31087 -15.17053 -14.99037 -14.54115 -14.35587 -14.20543 -13.81903 -13.50523 -13.44294 -13.02471 -12.78415 -12.56804 -12.41335 -12.39026 -12.37900 -12.23667 -12.12002 -12.05659 -11.80240 -11.18527 -10.82137 -10.70637 -10.64994 -9.79613 -9.04512 -9.01780 -8.48428 -6.16593 -0.73673 0.06476 0.15774 0.53587 0.59822 1.15840 1.31007 1.35715 1.43939 1.52717 2.05347 2.17100 2.39130 2.65799 2.83717 2.96600 3.17733 3.42576 3.49887 3.57320 3.82411 3.87184 3.90106 4.04629 4.10529 4.18801 4.34600 4.47082 4.55135 4.57767 4.65855 4.81600 4.92213 5.05266 5.05306 5.14811 5.27994 5.53722 5.55357 5.70511 5.75086 5.93525 6.01804 6.19159 6.51222 6.96444 7.00997 7.76065 7.82435 8.74396 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.001805 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.885552 B =15504.966814 C =15926.650373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.230 6.230 10 C 0.122 3.878 11 C -0.209 4.209 12 C -0.041 4.041 13 C -0.183 4.183 14 C 0.184 3.816 15 N -0.701 5.701 16 C 0.348 3.652 17 C -0.133 4.133 18 C 0.028 3.972 19 C 0.204 3.796 20 N -0.280 5.280 21 N -0.051 5.051 22 N -0.193 5.193 23 H 0.498 0.502 24 N -0.273 5.273 25 C 0.019 3.981 26 N -0.221 5.221 27 N -0.333 5.333 28 C -0.043 4.043 29 C -0.247 4.247 30 H 0.273 0.727 31 H 0.113 0.887 32 H 0.150 0.850 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.411 0.589 36 H 0.174 0.826 37 H 0.197 0.803 38 H 0.142 0.858 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.441 -25.986 -4.744 32.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.071 3.929 11 C -0.228 4.228 12 C -0.060 4.060 13 C -0.184 4.184 14 C 0.061 3.939 15 N -0.334 5.334 16 C 0.104 3.896 17 C -0.170 4.170 18 C 0.014 3.986 19 C -0.077 4.077 20 N -0.152 5.152 21 N -0.046 5.046 22 N -0.044 5.044 23 H 0.358 0.642 24 N -0.126 5.126 25 C -0.154 4.154 26 N -0.060 5.060 27 N -0.185 5.185 28 C -0.062 4.062 29 C -0.267 4.267 30 H 0.082 0.918 31 H 0.131 0.869 32 H 0.168 0.832 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.247 0.753 36 H 0.192 0.808 37 H 0.214 0.786 38 H 0.159 0.841 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.894 -25.685 -3.941 31.551 hybrid contribution 0.111 0.780 -0.836 1.148 sum 18.005 -24.906 -4.777 31.101 Atomic orbital electron populations 1.70177 1.08018 1.28846 1.48612 1.26590 0.96840 1.02779 0.95833 0.84593 0.77835 0.74605 0.79251 1.18789 1.19721 1.17631 1.21827 0.92556 0.81341 1.53181 0.87913 1.83945 1.36138 1.12718 1.80835 1.20030 0.91706 0.87956 0.93189 1.20470 1.00080 0.90583 1.11654 1.20928 0.93247 0.96923 0.94868 1.19448 0.93351 0.94173 1.11423 1.20268 0.99277 0.91725 0.82584 1.44856 1.55466 1.22999 1.10038 1.20020 0.90157 0.88581 0.90797 1.22011 0.98902 0.95176 1.00870 1.18108 0.96641 0.93570 0.90278 1.23171 0.99662 0.92781 0.92053 1.76126 1.17236 1.19313 1.02564 1.78949 1.08076 0.97360 1.20190 1.47862 1.34583 1.21926 1.00075 0.64230 1.74898 1.16885 1.14654 1.06190 1.24359 1.01075 1.02323 0.87642 1.72748 1.03724 0.99874 1.29605 1.72817 1.16439 1.09024 1.20246 1.20986 0.99916 0.90809 0.94480 1.21260 0.92997 1.00238 1.12166 0.91816 0.86906 0.83238 0.89100 0.89353 0.75266 0.80845 0.78596 0.84055 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.73 13.67 21.62 0.30 -55.43 16 2 C -0.02 -1.27 5.49 84.84 0.47 -0.80 16 3 Si 1.02 42.19 29.55 68.60 2.03 44.22 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 7 C -0.41 -23.53 9.49 67.92 0.64 -22.88 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 9 O -0.23 -13.52 9.76 -22.72 -0.22 -13.74 16 10 C 0.12 5.79 6.65 22.58 0.15 5.94 16 11 C -0.21 -8.28 9.99 22.39 0.22 -8.05 16 12 C -0.04 -1.21 9.69 22.25 0.22 -0.99 16 13 C -0.18 -4.74 5.25 -19.84 -0.10 -4.85 16 14 C 0.18 3.31 5.04 85.63 0.43 3.74 16 15 N -0.70 -14.07 5.72 -348.48 -1.99 -16.07 16 16 C 0.35 7.44 7.74 133.04 1.03 8.47 16 17 C -0.13 -2.35 9.10 22.86 0.21 -2.14 16 18 C 0.03 0.48 5.92 -19.81 -0.12 0.37 16 19 C 0.20 3.20 7.98 137.39 1.10 4.30 16 20 N -0.28 -4.81 12.37 -52.18 -0.65 -5.45 16 21 N -0.05 -0.67 13.47 37.02 0.50 -0.17 16 22 N -0.19 -1.28 7.90 37.02 0.29 -0.99 16 23 H 0.50 -1.74 8.96 -347.53 -3.12 -4.85 16 24 N -0.27 -3.14 12.18 -52.13 -0.64 -3.77 16 25 C 0.02 0.33 11.02 85.11 0.94 1.27 16 26 N -0.22 -5.31 11.48 -56.58 -0.65 -5.96 16 27 N -0.33 -8.60 11.52 -55.19 -0.64 -9.24 16 28 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 29 C -0.25 -10.05 9.17 22.39 0.21 -9.85 16 30 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.09 1.33 7.89 -2.39 -0.02 1.31 16 34 H 0.09 1.33 7.91 -2.39 -0.02 1.31 16 35 H 0.41 9.03 8.59 -92.71 -0.80 8.23 16 36 H 0.17 2.48 6.80 -2.91 -0.02 2.46 16 37 H 0.20 2.40 7.97 -2.91 -0.02 2.37 16 38 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 39 H 0.12 4.96 5.64 -2.91 -0.02 4.94 16 Total: -1.00 -76.57 352.62 1.19 -75.38 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -2.74 Total: 17.80 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 5.60 Total: -26.58 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -3.47 Total: -97.08 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.22 Total: -13.74 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -76.57 1.19 -75.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.162 kcal (2) G-P(sol) polarization free energy of solvation -76.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds