Wall clock time and date at job start Tue Mar 31 2020 22:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86802 * 120.00078 * 2 1 4 4 H 1.48501 * 109.47080 * 270.00011 * 3 2 1 5 5 H 1.48495 * 109.47054 * 29.99630 * 3 2 1 6 6 H 1.48500 * 109.47285 * 150.00212 * 3 2 1 7 7 C 1.38652 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00655 * 179.97438 * 7 2 1 9 9 O 1.34834 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00340 * 185.05311 * 9 7 2 11 11 C 1.38882 * 120.07145 * 174.73672 * 10 9 7 12 12 C 1.38099 * 119.93206 * 180.25590 * 11 10 9 13 13 C 1.38295 * 120.06865 * 359.47410 * 12 11 10 14 14 C 1.50701 * 119.93297 * 180.25412 * 13 12 11 15 15 N 1.46503 * 109.46929 * 89.99901 * 14 13 12 16 16 C 1.38359 * 119.99518 * 180.02562 * 15 14 13 17 17 N 1.32888 * 120.60535 * 359.97438 * 16 15 14 18 18 C 1.31770 * 120.81052 * 180.02562 * 17 16 15 19 19 N 1.31832 * 122.11026 * 0.02562 * 18 17 16 20 20 C 1.32392 * 121.13495 * 359.97292 * 19 18 17 21 21 C 1.39260 * 119.04611 * 359.72859 * 20 19 18 22 22 C 1.48379 * 120.94973 * 180.27278 * 21 20 19 23 23 N 1.34068 * 126.67997 * 179.97438 * 22 21 20 24 24 N 1.28988 * 107.26394 * 179.83498 * 23 22 21 25 25 N 1.28721 * 108.95231 * 0.43914 * 24 23 22 26 26 H 0.97005 * 125.34057 * 179.74716 * 25 24 23 27 27 N 1.28874 * 109.32573 * 359.72002 * 25 24 23 28 28 C 1.38308 * 120.13808 * 0.27516 * 13 12 11 29 29 C 1.38100 * 120.06790 * 359.97438 * 28 13 12 30 30 H 0.97006 * 120.00187 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.03090 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.96243 * 179.74600 * 12 11 10 33 33 H 1.08996 * 109.46994 * 209.99646 * 14 13 12 34 34 H 1.09003 * 109.46785 * 330.00247 * 14 13 12 35 35 H 0.96997 * 119.99855 * 359.97438 * 15 14 13 36 36 H 1.07994 * 118.94264 * 179.97438 * 18 17 16 37 37 H 1.08000 * 120.47655 * 180.02562 * 20 19 18 38 38 H 1.07997 * 119.96346 * 180.02562 * 28 13 12 39 39 H 1.07996 * 120.03027 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1076 11 6 1.4364 -4.7350 0.2242 12 6 2.1872 -5.8885 0.3383 13 6 3.5684 -5.8203 0.3256 14 6 4.3847 -7.0816 0.4445 15 7 4.6430 -7.6238 -0.8918 16 6 5.3783 -8.7870 -1.0359 17 7 5.8561 -9.4217 0.0292 18 6 6.5572 -10.5295 -0.1034 19 7 6.8173 -11.0572 -1.2832 20 6 6.3803 -10.4913 -2.3975 21 6 5.6290 -9.3219 -2.3124 22 6 5.1131 -8.6557 -3.5337 23 7 4.3820 -7.5331 -3.5855 24 7 4.1425 -7.2893 -4.8293 25 7 4.6820 -8.2114 -5.5475 26 1 4.6449 -8.2624 -6.5155 27 7 5.2795 -9.0558 -4.7789 28 6 4.2022 -4.5970 0.2043 29 6 3.4571 -3.4395 0.0951 30 1 -0.4851 0.8401 -0.0004 31 1 0.3578 -4.7893 0.2294 32 1 1.6951 -6.8452 0.4331 33 1 5.3318 -6.8564 0.9346 34 1 3.8355 -7.8154 1.0344 35 1 4.2980 -7.1677 -1.6752 36 1 6.9315 -11.0204 0.7827 37 1 6.5993 -10.9330 -3.3584 38 1 5.2810 -4.5471 0.1943 39 1 3.9526 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:40 Heat of formation + Delta-G solvation = 182.064745 kcal Electronic energy + Delta-G solvation = -27338.643468 eV Core-core repulsion = 23285.689929 eV Total energy + Delta-G solvation = -4052.953538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.70777 -41.04317 -39.15474 -37.31061 -35.95908 -34.72329 -34.14161 -32.85007 -32.29231 -31.26547 -30.23812 -29.29492 -26.15623 -25.70550 -25.01419 -24.46469 -22.95321 -22.57725 -22.02602 -20.61017 -19.59753 -18.27795 -18.03263 -17.49763 -17.39961 -16.97283 -16.39832 -15.64072 -15.32178 -14.70137 -14.65630 -14.54783 -14.34651 -13.93675 -13.66937 -13.58654 -13.58213 -13.13178 -12.75721 -12.55638 -12.30218 -11.82080 -11.73036 -11.49898 -11.49091 -11.36646 -11.17385 -11.15470 -10.91214 -10.73394 -10.66015 -10.47084 -9.82545 -9.39425 -9.37453 -8.89050 -8.25043 -8.12522 -7.30145 -6.50739 -4.09375 0.33437 0.91251 1.23051 1.97658 2.06983 2.07557 2.17522 3.06442 3.10674 3.14737 3.16312 3.47443 3.73814 3.82242 3.92340 4.07665 4.13872 4.50632 4.66385 5.03244 5.04431 5.16534 5.18170 5.23849 5.29331 5.39591 5.42935 5.68873 5.81671 5.84839 6.10305 6.13135 6.15465 6.37584 6.61368 6.64739 6.83431 6.96072 7.04080 7.17646 7.30181 7.38130 7.58412 7.75081 7.89154 7.94225 8.14853 8.94726 9.63338 10.66900 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.002520 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.668592 B =11109.635526 C =12168.501008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.163 3.837 11 C -0.195 4.195 12 C -0.051 4.051 13 C -0.216 4.216 14 C 0.181 3.819 15 N -0.679 5.679 16 C 0.472 3.528 17 N -0.575 5.575 18 C 0.356 3.644 19 N -0.572 5.572 20 C 0.225 3.775 21 C -0.208 4.208 22 C 0.243 3.757 23 N -0.285 5.285 24 N -0.031 5.031 25 N -0.225 5.225 26 H 0.477 0.523 27 N -0.301 5.301 28 C -0.048 4.048 29 C -0.236 4.236 30 H 0.271 0.729 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.427 0.573 36 H 0.199 0.801 37 H 0.171 0.829 38 H 0.107 0.893 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.796 -18.746 -7.133 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.108 3.892 11 C -0.214 4.214 12 C -0.070 4.070 13 C -0.218 4.218 14 C 0.058 3.942 15 N -0.313 5.313 16 C 0.222 3.778 17 N -0.301 5.301 18 C 0.067 3.933 19 N -0.292 5.292 20 C 0.059 3.941 21 C -0.224 4.224 22 C -0.037 4.037 23 N -0.158 5.158 24 N -0.027 5.027 25 N -0.071 5.071 26 H 0.331 0.669 27 N -0.153 5.153 28 C -0.067 4.067 29 C -0.256 4.256 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.273 0.727 36 H 0.215 0.785 37 H 0.188 0.812 38 H 0.125 0.875 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.251 -18.296 -6.488 22.437 hybrid contribution 0.222 1.133 -1.476 1.874 sum 11.472 -17.163 -7.964 22.127 Atomic orbital electron populations 1.70036 1.06001 1.27818 1.45582 1.25308 0.95850 0.98905 0.96390 0.85703 0.78963 0.79968 0.78769 1.19831 1.20188 1.19116 1.21357 0.91869 0.80740 1.52896 0.88934 1.83976 1.34494 1.11550 1.77567 1.19427 0.90300 0.88023 0.91439 1.20197 0.99643 0.90272 1.11297 1.20509 0.92744 0.96805 0.96963 1.19170 0.93588 0.93413 1.15588 1.20121 0.98817 0.92727 0.82486 1.45921 1.51667 1.21809 1.11869 1.18571 0.85571 0.86177 0.87483 1.68187 1.18079 1.12583 1.31208 1.24883 0.86553 0.86424 0.95457 1.68523 1.26968 1.34981 0.98712 1.22988 0.85653 0.87449 0.97983 1.18228 1.13573 1.02489 0.88068 1.23167 0.97392 0.92081 0.91095 1.75583 1.16068 1.14537 1.09648 1.78976 1.14288 1.12244 0.97160 1.47699 1.32672 1.13909 1.12846 0.66893 1.74871 1.19986 1.18445 1.01990 1.20623 0.98318 0.91700 0.96023 1.21141 0.93779 0.98927 1.11717 0.91911 0.86380 0.87040 0.91142 0.91099 0.72652 0.78466 0.81220 0.87482 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.27 29.55 -169.99 -5.02 15.24 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.39 -10.82 9.49 30.89 0.29 -10.53 16 8 H 0.09 2.36 5.20 -52.48 -0.27 2.08 16 9 O -0.17 -4.88 9.76 0.05 0.00 -4.88 16 10 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 11 C -0.19 -4.04 9.99 -39.39 -0.39 -4.43 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 13 C -0.22 -3.60 5.25 -104.57 -0.55 -4.15 16 14 C 0.18 2.52 5.85 -5.19 -0.03 2.49 16 15 N -0.68 -9.46 5.63 -61.23 -0.34 -9.80 16 16 C 0.47 6.14 7.52 -154.65 -1.16 4.98 16 17 N -0.58 -6.96 9.69 -13.60 -0.13 -7.10 16 18 C 0.36 3.53 12.27 -92.14 -1.13 2.40 16 19 N -0.57 -5.97 10.42 -14.40 -0.15 -6.12 16 20 C 0.23 2.27 10.98 -16.93 -0.19 2.08 16 21 C -0.21 -2.46 5.92 -104.43 -0.62 -3.08 16 22 C 0.24 2.92 7.93 -156.30 -1.24 1.68 16 23 N -0.28 -3.86 9.63 32.14 0.31 -3.55 16 24 N -0.03 -0.37 13.47 60.35 0.81 0.45 16 25 N -0.22 -1.77 7.90 60.35 0.48 -1.29 16 26 H 0.48 1.35 8.96 -340.36 -3.05 -1.70 16 27 N -0.30 -2.92 12.17 32.16 0.39 -2.53 16 28 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 29 C -0.24 -5.04 9.17 -39.40 -0.36 -5.40 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 31 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 32 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.43 6.38 5.22 -40.82 -0.21 6.16 16 36 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.17 1.31 7.96 -52.49 -0.42 0.89 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 LS Contribution 348.81 15.07 5.26 5.26 Total: -1.00 -33.17 348.81 -10.06 -43.23 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.92 Total: 7.14 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -6.50 Total: -11.88 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 2.12 Total: -54.12 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: 0.00 Total: -4.88 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.17 -10.06 -43.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.296 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds