Wall clock time and date at job start Tue Mar 31 2020 22:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86802 * 120.00078 * 2 1 4 4 H 1.48501 * 109.47080 * 270.00011 * 3 2 1 5 5 H 1.48495 * 109.47054 * 29.99630 * 3 2 1 6 6 H 1.48500 * 109.47285 * 150.00212 * 3 2 1 7 7 C 1.38652 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00655 * 179.97438 * 7 2 1 9 9 O 1.34834 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00340 * 185.05311 * 9 7 2 11 11 C 1.38882 * 120.07145 * 174.73672 * 10 9 7 12 12 C 1.38099 * 119.93206 * 180.25590 * 11 10 9 13 13 C 1.38295 * 120.06865 * 359.47410 * 12 11 10 14 14 C 1.50701 * 119.93297 * 180.25412 * 13 12 11 15 15 N 1.46503 * 109.46929 * 89.99901 * 14 13 12 16 16 C 1.38359 * 119.99518 * 180.02562 * 15 14 13 17 17 N 1.32888 * 120.60535 * 359.97438 * 16 15 14 18 18 C 1.31770 * 120.81052 * 180.02562 * 17 16 15 19 19 N 1.31832 * 122.11026 * 0.02562 * 18 17 16 20 20 C 1.32392 * 121.13495 * 359.97292 * 19 18 17 21 21 C 1.39260 * 119.04611 * 359.72859 * 20 19 18 22 22 C 1.48379 * 120.94973 * 180.27278 * 21 20 19 23 23 N 1.34068 * 126.67997 * 179.97438 * 22 21 20 24 24 N 1.28988 * 107.26394 * 179.83498 * 23 22 21 25 25 N 1.28721 * 108.95231 * 0.43914 * 24 23 22 26 26 H 0.97005 * 125.34057 * 179.74716 * 25 24 23 27 27 N 1.28874 * 109.32573 * 359.72002 * 25 24 23 28 28 C 1.38308 * 120.13808 * 0.27516 * 13 12 11 29 29 C 1.38100 * 120.06790 * 359.97438 * 28 13 12 30 30 H 0.97006 * 120.00187 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.03090 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.96243 * 179.74600 * 12 11 10 33 33 H 1.08996 * 109.46994 * 209.99646 * 14 13 12 34 34 H 1.09003 * 109.46785 * 330.00247 * 14 13 12 35 35 H 0.96997 * 119.99855 * 359.97438 * 15 14 13 36 36 H 1.07994 * 118.94264 * 179.97438 * 18 17 16 37 37 H 1.08000 * 120.47655 * 180.02562 * 20 19 18 38 38 H 1.07997 * 119.96346 * 180.02562 * 28 13 12 39 39 H 1.07996 * 120.03027 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1076 11 6 1.4364 -4.7350 0.2242 12 6 2.1872 -5.8885 0.3383 13 6 3.5684 -5.8203 0.3256 14 6 4.3847 -7.0816 0.4445 15 7 4.6430 -7.6238 -0.8918 16 6 5.3783 -8.7870 -1.0359 17 7 5.8561 -9.4217 0.0292 18 6 6.5572 -10.5295 -0.1034 19 7 6.8173 -11.0572 -1.2832 20 6 6.3803 -10.4913 -2.3975 21 6 5.6290 -9.3219 -2.3124 22 6 5.1131 -8.6557 -3.5337 23 7 4.3820 -7.5331 -3.5855 24 7 4.1425 -7.2893 -4.8293 25 7 4.6820 -8.2114 -5.5475 26 1 4.6449 -8.2624 -6.5155 27 7 5.2795 -9.0558 -4.7789 28 6 4.2022 -4.5970 0.2043 29 6 3.4571 -3.4395 0.0951 30 1 -0.4851 0.8401 -0.0004 31 1 0.3578 -4.7893 0.2294 32 1 1.6951 -6.8452 0.4331 33 1 5.3318 -6.8564 0.9346 34 1 3.8355 -7.8154 1.0344 35 1 4.2980 -7.1677 -1.6752 36 1 6.9315 -11.0204 0.7827 37 1 6.5993 -10.9330 -3.3584 38 1 5.2810 -4.5471 0.1943 39 1 3.9526 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:40 Heat of formation + Delta-G solvation = 159.897500 kcal Electronic energy + Delta-G solvation = -27339.604712 eV Core-core repulsion = 23285.689929 eV Total energy + Delta-G solvation = -4053.914782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.52458 -41.89093 -40.83527 -38.80068 -37.17125 -35.58121 -34.97465 -34.39341 -33.65121 -32.28740 -31.83087 -30.57745 -27.69936 -26.81765 -26.24948 -25.44062 -23.92446 -23.65962 -23.42012 -22.12177 -20.40071 -19.88074 -19.17905 -18.84224 -18.31925 -18.21063 -17.21578 -16.74558 -16.58055 -16.27288 -15.99776 -15.67219 -15.63027 -15.38814 -15.17768 -14.90505 -14.45942 -14.39416 -14.37006 -13.84452 -13.51756 -13.37897 -13.01917 -12.64322 -12.54009 -12.42744 -12.35061 -12.32564 -12.23821 -12.12267 -12.04958 -11.96177 -11.20665 -10.82536 -10.67852 -10.21785 -9.81960 -9.08083 -9.02084 -8.48830 -6.17070 -0.46253 0.09135 0.35838 0.53173 0.57368 1.21041 1.34784 1.38126 1.43293 1.52209 2.09940 2.16685 2.60667 2.83911 2.91527 2.98651 3.15270 3.32050 3.40709 3.48146 3.75301 3.90666 4.02525 4.15850 4.20596 4.36497 4.43452 4.47191 4.55804 4.64835 4.73879 4.80200 5.03493 5.13608 5.25634 5.34540 5.50982 5.57173 5.67807 5.74278 5.74799 6.00870 6.04107 6.16935 6.59786 6.95869 7.05954 7.28228 7.75114 8.74163 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.002520 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.668592 B =11109.635526 C =12168.501008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.103 0.897 9 O -0.228 6.228 10 C 0.125 3.875 11 C -0.205 4.205 12 C -0.044 4.044 13 C -0.186 4.186 14 C 0.189 3.811 15 N -0.690 5.690 16 C 0.461 3.539 17 N -0.587 5.587 18 C 0.357 3.643 19 N -0.576 5.576 20 C 0.232 3.768 21 C -0.217 4.217 22 C 0.232 3.768 23 N -0.317 5.317 24 N -0.052 5.052 25 N -0.194 5.194 26 H 0.496 0.504 27 N -0.289 5.289 28 C -0.046 4.046 29 C -0.244 4.244 30 H 0.273 0.727 31 H 0.115 0.885 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.422 0.578 36 H 0.233 0.767 37 H 0.193 0.807 38 H 0.137 0.863 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.654 -21.356 -7.431 26.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.120 0.880 9 O -0.134 6.134 10 C 0.074 3.926 11 C -0.224 4.224 12 C -0.062 4.062 13 C -0.187 4.187 14 C 0.066 3.934 15 N -0.324 5.324 16 C 0.212 3.788 17 N -0.313 5.313 18 C 0.068 3.932 19 N -0.295 5.295 20 C 0.066 3.934 21 C -0.232 4.232 22 C -0.048 4.048 23 N -0.190 5.190 24 N -0.046 5.046 25 N -0.045 5.045 26 H 0.355 0.645 27 N -0.142 5.142 28 C -0.064 4.064 29 C -0.263 4.263 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.163 0.837 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.268 0.732 36 H 0.249 0.751 37 H 0.210 0.790 38 H 0.155 0.845 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.153 -20.984 -6.799 26.209 hybrid contribution -0.477 1.447 -1.458 2.109 sum 13.676 -19.537 -8.257 25.237 Atomic orbital electron populations 1.70180 1.08032 1.28872 1.48624 1.26584 0.96833 1.02731 0.95760 0.84599 0.77868 0.74586 0.79256 1.18841 1.19540 1.17601 1.21834 0.92557 0.81368 1.53252 0.88011 1.83945 1.36011 1.12635 1.80852 1.19956 0.91570 0.87938 0.93173 1.20437 1.00049 0.90469 1.11472 1.20873 0.93175 0.96943 0.95248 1.19573 0.93588 0.94396 1.11157 1.20044 0.98882 0.91298 0.83132 1.45704 1.52913 1.22666 1.11166 1.18693 0.85764 0.86014 0.88319 1.68232 1.18655 1.13350 1.31028 1.25602 0.85437 0.85677 0.96466 1.68621 1.26870 1.34961 0.99026 1.23354 0.84514 0.86652 0.98888 1.18337 1.14103 1.03064 0.87697 1.23273 0.97719 0.92057 0.91781 1.75540 1.17295 1.15632 1.10500 1.78923 1.15311 1.13277 0.97132 1.47774 1.30614 1.12439 1.13712 0.64464 1.74842 1.19623 1.18290 1.01427 1.20938 0.99725 0.90928 0.94851 1.21231 0.93065 1.00017 1.11981 0.91773 0.86675 0.83686 0.90086 0.89853 0.73243 0.75092 0.79023 0.84500 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.37 13.67 21.61 0.30 -56.08 16 2 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 3 Si 1.02 42.75 29.55 68.60 2.03 44.78 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.41 -24.07 9.49 67.92 0.64 -23.42 16 8 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -13.72 9.76 -22.74 -0.22 -13.94 16 10 C 0.12 6.18 6.65 22.58 0.15 6.33 16 11 C -0.21 -8.69 9.99 22.39 0.22 -8.46 16 12 C -0.04 -1.47 9.69 22.25 0.22 -1.25 16 13 C -0.19 -5.77 5.25 -19.83 -0.10 -5.88 16 14 C 0.19 4.68 5.85 85.63 0.50 5.18 16 15 N -0.69 -17.61 5.63 -347.63 -1.96 -19.57 16 16 C 0.46 10.87 7.52 133.51 1.00 11.87 16 17 N -0.59 -12.44 9.69 -196.95 -1.91 -14.35 16 18 C 0.36 5.86 12.27 180.88 2.22 8.08 16 19 N -0.58 -10.17 10.42 -199.47 -2.08 -12.24 16 20 C 0.23 4.01 10.98 84.85 0.93 4.94 16 21 C -0.22 -4.64 5.92 -19.74 -0.12 -4.75 16 22 C 0.23 5.15 7.93 137.34 1.09 6.24 16 23 N -0.32 -8.22 9.63 -52.22 -0.50 -8.72 16 24 N -0.05 -1.14 13.47 37.02 0.50 -0.64 16 25 N -0.19 -2.66 7.90 37.02 0.29 -2.37 16 26 H 0.50 1.68 8.96 -347.53 -3.12 -1.43 16 27 N -0.29 -4.94 12.17 -52.17 -0.64 -5.58 16 28 C -0.05 -1.58 9.69 22.25 0.22 -1.36 16 29 C -0.24 -10.56 9.17 22.39 0.21 -10.35 16 30 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 31 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 32 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 34 H 0.08 1.91 8.08 -2.39 -0.02 1.89 16 35 H 0.42 11.90 5.22 -92.71 -0.48 11.42 16 36 H 0.23 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.19 2.32 7.96 -2.91 -0.02 2.30 16 38 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 39 H 0.12 5.29 5.64 -2.91 -0.02 5.28 16 Total: -1.00 -76.75 348.81 1.02 -75.73 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -2.44 Total: 26.57 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 7.65 Total: -13.59 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -6.00 Total: -119.55 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.22 Total: -13.94 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -76.75 1.02 -75.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.631 kcal (2) G-P(sol) polarization free energy of solvation -76.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds