Wall clock time and date at job start Tue Mar 31 2020 22:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86803 * 119.99851 * 2 1 4 4 H 1.48500 * 109.46803 * 239.99829 * 3 2 1 5 5 H 1.48494 * 109.47025 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46899 * 120.00142 * 3 2 1 7 7 C 1.38647 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99786 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00687 * 0.02562 * 7 2 1 10 10 C 1.35748 * 117.00260 * 185.05900 * 9 7 2 11 11 C 1.38896 * 120.07304 * 354.47926 * 10 9 7 12 12 C 1.38069 * 119.93626 * 179.97438 * 11 10 9 13 13 C 1.38332 * 120.06651 * 359.74665 * 12 11 10 14 14 C 1.38280 * 120.13572 * 0.51397 * 13 12 11 15 15 C 1.50696 * 119.96258 * 179.76603 * 14 13 12 16 16 N 1.46500 * 109.47006 * 269.72163 * 15 14 13 17 17 C 1.31952 * 120.00242 * 120.00327 * 16 15 14 18 18 C 1.46908 * 120.56077 * 179.97438 * 17 16 15 19 19 C 1.34843 * 118.33143 * 179.97438 * 18 17 16 20 20 N 1.36783 * 119.29482 * 359.97438 * 19 18 17 21 21 H 0.97003 * 119.44382 * 180.02562 * 20 19 18 22 22 C 1.36188 * 121.11630 * 0.02562 * 20 19 18 23 23 C 1.47980 * 119.08563 * 179.97438 * 22 20 19 24 24 N 1.34189 * 126.69782 * 0.02596 * 23 22 20 25 25 N 1.28979 * 107.25430 * 180.02562 * 24 23 22 26 26 N 1.28717 * 108.98660 * 359.97438 * 25 24 23 27 27 H 0.97003 * 125.32149 * 180.02562 * 26 25 24 28 28 N 1.28863 * 109.36006 * 359.73260 * 26 25 24 29 29 N 1.31199 * 121.83160 * 0.02562 * 22 20 19 30 30 C 1.38121 * 120.06748 * 359.48836 * 14 13 12 31 31 H 0.97009 * 120.00236 * 359.97438 * 1 2 3 32 32 H 1.08009 * 120.02962 * 359.96418 * 11 10 9 33 33 H 1.07999 * 119.97004 * 180.02562 * 12 11 10 34 34 H 1.07997 * 119.92884 * 180.27441 * 13 12 11 35 35 H 1.08997 * 109.47228 * 149.72407 * 15 14 13 36 36 H 1.09000 * 109.47529 * 29.71959 * 15 14 13 37 37 H 1.07994 * 120.83927 * 0.02562 * 18 17 16 38 38 H 1.07997 * 120.34966 * 180.25285 * 19 18 17 39 39 H 1.08005 * 120.03248 * 180.23869 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0087 -1.2007 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1077 11 6 3.4573 -3.4394 0.0957 12 6 4.2023 -4.5967 0.2054 13 6 3.5684 -5.8196 0.3326 14 6 2.1874 -5.8883 0.3395 15 6 1.5009 -7.2232 0.4730 16 7 1.2723 -7.7900 -0.8585 17 6 1.8058 -8.9530 -1.1809 18 6 1.5841 -9.5331 -2.5123 19 6 2.1510 -10.7237 -2.7940 20 7 2.9076 -11.3472 -1.8402 21 1 3.3167 -12.2036 -2.0407 22 6 3.0963 -10.7860 -0.6138 23 6 3.9229 -11.5001 0.3846 24 7 4.5349 -12.6829 0.2205 25 7 5.1483 -12.9525 1.3226 26 7 4.9464 -11.9953 2.1591 27 1 5.2995 -11.9554 3.0617 28 7 4.2070 -11.0952 1.6081 29 7 2.5648 -9.6303 -0.2924 30 6 1.4365 -4.7342 0.2301 31 1 -0.4851 0.8401 0.0004 32 1 3.9528 -2.4845 0.0003 33 1 5.2811 -4.5466 0.1965 34 1 4.1534 -6.7229 0.4227 35 1 0.5453 -7.0912 0.9805 36 1 2.1298 -7.8990 1.0524 37 1 0.9830 -9.0185 -3.2472 38 1 2.0128 -11.1780 -3.7640 39 1 0.3579 -4.7881 0.2394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592680462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:51 Heat of formation + Delta-G solvation = 203.526108 kcal Electronic energy + Delta-G solvation = -26879.973413 eV Core-core repulsion = 22827.950509 eV Total energy + Delta-G solvation = -4052.022904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.12527 -40.90571 -38.88434 -36.83773 -35.74843 -34.97405 -34.44163 -32.78037 -32.16961 -31.79733 -29.92662 -28.77483 -26.29717 -25.97396 -25.17599 -24.88781 -23.02487 -22.15119 -21.40779 -20.44008 -19.84392 -18.96465 -17.84375 -17.81923 -17.46546 -16.93994 -16.61059 -15.31448 -15.26034 -14.88787 -14.63748 -14.55590 -14.32854 -14.02931 -13.67611 -13.47401 -13.31911 -12.94536 -12.61730 -12.44602 -12.08081 -11.94495 -11.79833 -11.77678 -11.63919 -11.39231 -11.15746 -10.72657 -10.67312 -10.47236 -10.41529 -10.32612 -10.11299 -9.21265 -9.13758 -8.72107 -7.89640 -7.59963 -7.07186 -6.33124 -3.92044 0.15966 0.59158 1.23315 1.47767 1.82973 2.28146 2.31404 2.54062 2.80488 3.19578 3.21133 3.23535 3.59725 3.64397 4.06103 4.15421 4.34947 4.53460 4.73835 4.81503 4.89818 5.17081 5.24346 5.38570 5.50531 5.61433 5.74777 5.83088 5.90563 6.06974 6.12187 6.24975 6.29049 6.36718 6.53519 6.67602 6.83324 7.09602 7.20551 7.42945 7.47359 7.55171 7.58149 7.68319 7.97795 8.12232 8.14339 9.12424 9.85468 10.85268 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.002131 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.546412 B =13135.971710 C =13950.439552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.390 4.390 8 H 0.090 0.910 9 O -0.180 6.180 10 C 0.152 3.848 11 C -0.234 4.234 12 C -0.079 4.079 13 C -0.199 4.199 14 C -0.034 4.034 15 C 0.085 3.915 16 N -0.497 5.497 17 C 0.327 3.673 18 C -0.179 4.179 19 C 0.102 3.898 20 N -0.628 5.628 21 H 0.424 0.576 22 C 0.487 3.513 23 C 0.203 3.797 24 N -0.259 5.259 25 N -0.039 5.039 26 N -0.218 5.218 27 H 0.482 0.518 28 N -0.225 5.225 29 N -0.513 5.513 30 C -0.171 4.171 31 H 0.269 0.731 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.158 0.842 38 H 0.177 0.823 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.517 -28.906 -0.776 30.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.107 0.893 9 O -0.084 6.084 10 C 0.099 3.901 11 C -0.253 4.253 12 C -0.097 4.097 13 C -0.218 4.218 14 C -0.035 4.035 15 C -0.044 4.044 16 N -0.215 5.215 17 C 0.050 3.950 18 C -0.209 4.209 19 C -0.021 4.021 20 N -0.250 5.250 21 H 0.261 0.739 22 C 0.208 3.792 23 C -0.079 4.079 24 N -0.134 5.134 25 N -0.034 5.034 26 N -0.066 5.066 27 H 0.338 0.662 28 N -0.079 5.079 29 N -0.241 5.241 30 C -0.191 4.191 31 H 0.079 0.921 32 H 0.143 0.857 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.175 0.825 38 H 0.194 0.806 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.752 -27.673 -0.151 29.024 hybrid contribution 1.077 0.223 0.134 1.108 sum 9.829 -27.450 -0.018 29.157 Atomic orbital electron populations 1.70039 1.05889 1.27536 1.46604 1.25258 0.95822 0.98704 0.96803 0.85805 0.78665 0.79984 0.79076 1.19600 1.20349 1.19611 1.21253 0.91696 0.80970 1.52731 0.89301 1.83984 1.34148 1.11308 1.78985 1.19331 0.90213 0.88011 0.92510 1.21142 0.93867 0.98807 1.11498 1.20668 0.98169 0.92402 0.98454 1.20411 0.93625 0.96679 1.11106 1.19134 0.92981 0.92700 0.98671 1.20894 0.99963 0.93188 0.90379 1.73560 1.21645 1.07143 1.19164 1.21147 0.92142 0.91970 0.89781 1.22259 1.05439 0.95845 0.97369 1.21806 0.92906 0.94036 0.93401 1.41850 1.48081 1.23964 1.11115 0.73949 1.18117 0.90843 0.88834 0.81396 1.22602 1.01794 0.92175 0.91349 1.76106 1.09455 1.12355 1.15521 1.78924 1.16561 1.13024 0.94848 1.47961 1.31565 1.10155 1.16894 0.66185 1.75289 1.08998 1.15042 1.08549 1.69279 1.14881 1.05199 1.34727 1.20052 0.99385 0.89730 1.09915 0.92125 0.85748 0.87781 0.88209 0.90138 0.91191 0.82477 0.80556 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.42 13.67 55.48 0.76 -25.66 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 21.39 29.55 -169.99 -5.02 16.36 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.39 -11.48 9.49 30.88 0.29 -11.19 16 8 H 0.09 2.43 5.20 -52.48 -0.27 2.15 16 9 O -0.18 -5.48 9.76 0.06 0.00 -5.48 16 10 C 0.15 4.03 6.65 -39.11 -0.26 3.77 16 11 C -0.23 -5.57 9.17 -39.40 -0.36 -5.94 16 12 C -0.08 -1.64 10.04 -39.61 -0.40 -2.03 16 13 C -0.20 -4.06 9.70 -39.53 -0.38 -4.45 16 14 C -0.03 -0.72 5.46 -104.65 -0.57 -1.30 16 15 C 0.09 1.59 6.47 -5.20 -0.03 1.55 16 16 N -0.50 -9.04 10.60 -60.37 -0.64 -9.68 16 17 C 0.33 4.84 7.60 -155.94 -1.19 3.66 16 18 C -0.18 -1.84 10.29 -37.28 -0.38 -2.22 16 19 C 0.10 0.61 11.28 -16.55 -0.19 0.42 16 20 N -0.63 -4.00 5.32 -10.65 -0.06 -4.06 16 21 H 0.42 1.47 8.46 -40.82 -0.35 1.12 16 22 C 0.49 4.88 7.67 -155.06 -1.19 3.69 16 23 C 0.20 1.86 8.10 -156.26 -1.27 0.59 16 24 N -0.26 -2.03 12.18 32.09 0.39 -1.64 16 25 N -0.04 -0.26 13.46 60.35 0.81 0.55 16 26 N -0.22 -1.12 7.90 60.35 0.48 -0.65 16 27 H 0.48 0.26 8.96 -340.35 -3.05 -2.79 16 28 N -0.23 -2.00 12.37 32.11 0.40 -1.60 16 29 N -0.51 -6.99 8.73 -9.03 -0.08 -7.07 16 30 C -0.17 -4.11 9.65 -39.40 -0.38 -4.49 16 31 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.12 2.92 5.64 -52.48 -0.30 2.63 16 33 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.08 1.46 8.08 -51.93 -0.42 1.04 16 36 H 0.07 1.25 6.65 -51.93 -0.35 0.91 16 37 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 38 H 0.18 0.24 8.06 -52.49 -0.42 -0.19 16 39 H 0.12 2.76 8.06 -52.48 -0.42 2.34 16 LS Contribution 353.52 15.07 5.33 5.33 Total: -1.00 -39.12 353.52 -10.02 -49.14 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.98 Total: 1.40 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -6.40 Total: -16.94 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 2.06 Total: -49.81 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: 0.00 Total: -5.48 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -39.12 -10.02 -49.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592680462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.665 kcal (2) G-P(sol) polarization free energy of solvation -39.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 213.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 203.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds