Wall clock time and date at job start Tue Mar 31 2020 22:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86803 * 119.99851 * 2 1 4 4 H 1.48500 * 109.46803 * 239.99829 * 3 2 1 5 5 H 1.48494 * 109.47025 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46899 * 120.00142 * 3 2 1 7 7 C 1.38647 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99786 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00687 * 0.02562 * 7 2 1 10 10 C 1.35748 * 117.00260 * 185.05900 * 9 7 2 11 11 C 1.38896 * 120.07304 * 354.47926 * 10 9 7 12 12 C 1.38069 * 119.93626 * 179.97438 * 11 10 9 13 13 C 1.38332 * 120.06651 * 359.74665 * 12 11 10 14 14 C 1.38280 * 120.13572 * 0.51397 * 13 12 11 15 15 C 1.50696 * 119.96258 * 179.76603 * 14 13 12 16 16 N 1.46500 * 109.47006 * 269.72163 * 15 14 13 17 17 C 1.31952 * 120.00242 * 120.00327 * 16 15 14 18 18 C 1.46908 * 120.56077 * 179.97438 * 17 16 15 19 19 C 1.34843 * 118.33143 * 179.97438 * 18 17 16 20 20 N 1.36783 * 119.29482 * 359.97438 * 19 18 17 21 21 H 0.97003 * 119.44382 * 180.02562 * 20 19 18 22 22 C 1.36188 * 121.11630 * 0.02562 * 20 19 18 23 23 C 1.47980 * 119.08563 * 179.97438 * 22 20 19 24 24 N 1.34189 * 126.69782 * 0.02596 * 23 22 20 25 25 N 1.28979 * 107.25430 * 180.02562 * 24 23 22 26 26 N 1.28717 * 108.98660 * 359.97438 * 25 24 23 27 27 H 0.97003 * 125.32149 * 180.02562 * 26 25 24 28 28 N 1.28863 * 109.36006 * 359.73260 * 26 25 24 29 29 N 1.31199 * 121.83160 * 0.02562 * 22 20 19 30 30 C 1.38121 * 120.06748 * 359.48836 * 14 13 12 31 31 H 0.97009 * 120.00236 * 359.97438 * 1 2 3 32 32 H 1.08009 * 120.02962 * 359.96418 * 11 10 9 33 33 H 1.07999 * 119.97004 * 180.02562 * 12 11 10 34 34 H 1.07997 * 119.92884 * 180.27441 * 13 12 11 35 35 H 1.08997 * 109.47228 * 149.72407 * 15 14 13 36 36 H 1.09000 * 109.47529 * 29.71959 * 15 14 13 37 37 H 1.07994 * 120.83927 * 0.02562 * 18 17 16 38 38 H 1.07997 * 120.34966 * 180.25285 * 19 18 17 39 39 H 1.08005 * 120.03248 * 180.23869 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0087 -1.2007 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1077 11 6 3.4573 -3.4394 0.0957 12 6 4.2023 -4.5967 0.2054 13 6 3.5684 -5.8196 0.3326 14 6 2.1874 -5.8883 0.3395 15 6 1.5009 -7.2232 0.4730 16 7 1.2723 -7.7900 -0.8585 17 6 1.8058 -8.9530 -1.1809 18 6 1.5841 -9.5331 -2.5123 19 6 2.1510 -10.7237 -2.7940 20 7 2.9076 -11.3472 -1.8402 21 1 3.3167 -12.2036 -2.0407 22 6 3.0963 -10.7860 -0.6138 23 6 3.9229 -11.5001 0.3846 24 7 4.5349 -12.6829 0.2205 25 7 5.1483 -12.9525 1.3226 26 7 4.9464 -11.9953 2.1591 27 1 5.2995 -11.9554 3.0617 28 7 4.2070 -11.0952 1.6081 29 7 2.5648 -9.6303 -0.2924 30 6 1.4365 -4.7342 0.2301 31 1 -0.4851 0.8401 0.0004 32 1 3.9528 -2.4845 0.0003 33 1 5.2811 -4.5466 0.1965 34 1 4.1534 -6.7229 0.4227 35 1 0.5453 -7.0912 0.9805 36 1 2.1298 -7.8990 1.0524 37 1 0.9830 -9.0185 -3.2472 38 1 2.0128 -11.1780 -3.7640 39 1 0.3579 -4.7881 0.2394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592680462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:50 Heat of formation + Delta-G solvation = 173.100297 kcal Electronic energy + Delta-G solvation = -26881.292775 eV Core-core repulsion = 22827.950509 eV Total energy + Delta-G solvation = -4053.342266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.72266 -41.73586 -40.78658 -38.56611 -36.94279 -35.60117 -35.13881 -34.33603 -33.82190 -32.74831 -31.36583 -30.52857 -27.60095 -27.02555 -26.84390 -25.68548 -23.83983 -23.36699 -23.02350 -22.06351 -20.52721 -19.62116 -19.51428 -18.86127 -18.42435 -18.40717 -17.71427 -16.79229 -16.43534 -16.21172 -16.11147 -16.03294 -15.47700 -15.27460 -15.26574 -14.96927 -14.36059 -14.20797 -14.07080 -13.63099 -13.57439 -13.33426 -12.98434 -12.74217 -12.65969 -12.47377 -12.42989 -12.41686 -12.29977 -12.18861 -12.11424 -11.27000 -11.21737 -10.90140 -10.80881 -10.29665 -9.60044 -9.01416 -8.59358 -8.45905 -6.15376 -0.60746 0.00065 0.43168 0.58521 0.71429 0.94366 1.09212 1.34209 1.46336 1.51730 1.71119 2.09656 2.18568 2.69510 2.81813 2.96518 3.12843 3.43707 3.47873 3.63663 3.84339 4.04164 4.11778 4.19327 4.22109 4.29862 4.37696 4.52569 4.62912 4.69899 4.81228 4.88794 5.04081 5.10734 5.12662 5.29196 5.42486 5.50628 5.63283 5.68854 5.80577 6.02526 6.09345 6.19159 6.76479 6.88999 6.97492 7.09997 7.78910 8.77465 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.002131 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.546412 B =13135.971710 C =13950.439552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.023 2.977 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.416 4.416 8 H 0.102 0.898 9 O -0.232 6.232 10 C 0.118 3.882 11 C -0.243 4.243 12 C -0.068 4.068 13 C -0.184 4.184 14 C -0.026 4.026 15 C 0.099 3.901 16 N -0.575 5.575 17 C 0.341 3.659 18 C -0.228 4.228 19 C 0.157 3.843 20 N -0.603 5.603 21 H 0.444 0.556 22 C 0.498 3.502 23 C 0.190 3.810 24 N -0.256 5.256 25 N -0.036 5.036 26 N -0.191 5.191 27 H 0.500 0.500 28 N -0.246 5.246 29 N -0.558 5.558 30 C -0.190 4.190 31 H 0.273 0.727 32 H 0.125 0.875 33 H 0.148 0.852 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.161 0.839 38 H 0.241 0.759 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.992 -32.360 -1.848 34.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.119 0.881 9 O -0.139 6.139 10 C 0.067 3.933 11 C -0.263 4.263 12 C -0.086 4.086 13 C -0.203 4.203 14 C -0.027 4.027 15 C -0.030 4.030 16 N -0.297 5.297 17 C 0.067 3.933 18 C -0.258 4.258 19 C 0.032 3.968 20 N -0.224 5.224 21 H 0.285 0.715 22 C 0.220 3.780 23 C -0.093 4.093 24 N -0.131 5.131 25 N -0.030 5.030 26 N -0.043 5.043 27 H 0.360 0.640 28 N -0.101 5.101 29 N -0.288 5.288 30 C -0.210 4.210 31 H 0.082 0.918 32 H 0.142 0.858 33 H 0.165 0.835 34 H 0.145 0.855 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.179 0.821 38 H 0.257 0.743 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.305 -31.277 -1.218 33.633 hybrid contribution 0.208 0.606 0.435 0.774 sum 12.513 -30.671 -0.783 33.135 Atomic orbital electron populations 1.70204 1.08130 1.28883 1.48838 1.26678 0.96916 1.02865 0.95777 0.84602 0.77341 0.73944 0.79977 1.18044 1.19478 1.18066 1.21826 0.92580 0.81406 1.53429 0.88063 1.83952 1.35919 1.12533 1.81499 1.19815 0.91687 0.87656 0.94098 1.21266 0.92858 1.00153 1.11994 1.21084 1.00153 0.91091 0.96261 1.20777 0.93290 0.97639 1.08617 1.19577 0.93739 0.93210 0.96193 1.20606 0.98843 0.91662 0.91934 1.73602 1.27115 1.10513 1.18473 1.21742 0.89625 0.90814 0.91165 1.22339 1.09051 0.98306 0.96063 1.22700 0.88150 0.91599 0.94379 1.42109 1.46180 1.24209 1.09922 0.71509 1.18294 0.89334 0.87906 0.82451 1.22511 1.02551 0.92768 0.91443 1.76103 1.09378 1.11674 1.15990 1.78889 1.16264 1.13083 0.94808 1.47992 1.30062 1.08871 1.17387 0.63999 1.75250 1.09702 1.16204 1.08897 1.69216 1.16908 1.07108 1.35536 1.20158 0.99099 0.90352 1.11407 0.91812 0.85760 0.83469 0.85524 0.91796 0.90762 0.82096 0.74338 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.46 13.67 21.61 0.30 -59.17 16 2 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 3 Si 1.02 44.84 29.55 68.60 2.03 46.86 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.42 -25.81 9.49 67.92 0.64 -25.17 16 8 H 0.10 5.74 5.20 -2.91 -0.02 5.72 16 9 O -0.23 -15.22 9.76 -22.72 -0.22 -15.44 16 10 C 0.12 6.63 6.65 22.58 0.15 6.78 16 11 C -0.24 -11.87 9.17 22.39 0.21 -11.67 16 12 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 13 C -0.18 -7.36 9.70 22.30 0.22 -7.14 16 14 C -0.03 -1.17 5.46 -19.88 -0.11 -1.27 16 15 C 0.10 3.91 6.47 85.63 0.55 4.46 16 16 N -0.57 -21.87 10.60 -344.92 -3.66 -25.53 16 17 C 0.34 10.03 7.60 136.55 1.04 11.07 16 18 C -0.23 -4.21 10.29 23.76 0.24 -3.97 16 19 C 0.16 1.10 11.28 83.14 0.94 2.04 16 20 N -0.60 -4.96 5.32 -187.60 -1.00 -5.96 16 21 H 0.44 0.64 8.46 -92.71 -0.78 -0.15 16 22 C 0.50 8.62 7.67 136.72 1.05 9.67 16 23 C 0.19 2.95 8.10 137.14 1.11 4.06 16 24 N -0.26 -3.19 12.18 -52.38 -0.64 -3.83 16 25 N -0.04 -0.37 13.46 37.02 0.50 0.13 16 26 N -0.19 -1.47 7.90 37.02 0.29 -1.18 16 27 H 0.50 -0.76 8.96 -347.52 -3.12 -3.88 16 28 N -0.25 -3.83 12.37 -52.33 -0.65 -4.48 16 29 N -0.56 -14.58 8.73 -182.48 -1.59 -16.17 16 30 C -0.19 -9.86 9.65 22.39 0.22 -9.64 16 31 H 0.27 16.07 8.31 -92.70 -0.77 15.30 16 32 H 0.12 5.96 5.64 -2.91 -0.02 5.94 16 33 H 0.15 4.64 8.06 -2.91 -0.02 4.61 16 34 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 35 H 0.06 2.56 8.08 -2.39 -0.02 2.54 16 36 H 0.07 2.74 6.65 -2.39 -0.02 2.72 16 37 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.24 -1.19 8.06 -2.91 -0.02 -1.21 16 39 H 0.10 5.35 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -94.78 353.52 -0.43 -95.20 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -2.73 Total: 13.91 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 6.95 Total: -24.35 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -6.45 Total: -116.19 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.22 Total: -15.44 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -94.78 -0.43 -95.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592680462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 268.305 kcal (2) G-P(sol) polarization free energy of solvation -94.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds