Wall clock time and date at job start Tue Mar 31 2020 22:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00133 * 2 1 4 4 O 1.20828 * 120.00148 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00206 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46967 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.46814 * 179.97438 * 6 5 3 8 8 C 1.36966 * 120.00111 * 264.83248 * 7 6 5 9 9 H 1.07995 * 119.99842 * 125.91898 * 8 7 6 10 10 C 1.38975 * 119.99903 * 305.92116 * 8 7 6 11 11 N 1.31413 * 119.99993 * 4.50110 * 10 8 7 12 12 Si 1.86804 * 119.99958 * 184.50183 * 10 8 7 13 13 H 1.48501 * 109.46957 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46828 * 120.00108 * 12 10 8 15 15 H 1.48499 * 109.47111 * 239.99830 * 12 10 8 16 16 C 1.34776 * 119.99917 * 84.83748 * 7 6 5 17 17 O 1.21641 * 120.00188 * 3.68515 * 16 7 6 18 18 C 1.47302 * 120.00027 * 183.69358 * 16 7 6 19 19 C 1.47033 * 127.19329 * 352.72752 * 18 16 7 20 20 C 1.34177 * 105.95889 * 179.97438 * 19 18 16 21 21 O 1.34216 * 109.14101 * 359.76877 * 20 19 18 22 22 C 1.33675 * 110.91345 * 0.39125 * 21 20 19 23 23 C 1.50697 * 125.80935 * 179.87516 * 22 21 20 24 24 C 1.50700 * 109.47748 * 269.69197 * 23 22 21 25 25 O 1.20831 * 119.99396 * 0.02562 * 24 23 22 26 26 O 1.34226 * 120.00520 * 179.72706 * 24 23 22 27 27 C 1.45193 * 117.00243 * 180.27392 * 26 24 23 28 28 H 1.09003 * 109.47104 * 60.00308 * 1 2 3 29 29 H 1.08999 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47287 * 299.99657 * 1 2 3 31 31 H 1.08999 * 109.47177 * 60.00010 * 5 3 2 32 32 H 1.09002 * 109.47002 * 299.99597 * 5 3 2 33 33 H 1.08999 * 109.47340 * 59.99894 * 6 5 3 34 34 H 1.09001 * 109.47244 * 299.99715 * 6 5 3 35 35 H 0.97002 * 120.00029 * 179.97438 * 11 10 8 36 36 H 1.07998 * 127.02439 * 359.97438 * 19 18 16 37 37 H 1.08003 * 125.42968 * 179.97438 * 20 19 18 38 38 H 1.09007 * 109.46568 * 149.69352 * 23 22 21 39 39 H 1.08998 * 109.47426 * 29.69459 * 23 22 21 40 40 H 1.09000 * 109.47357 * 300.00461 * 27 26 24 41 41 H 1.09004 * 109.46940 * 59.99912 * 27 26 24 42 42 H 1.08994 * 109.47261 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4630 2.8188 0.0002 8 6 6.1414 2.9607 1.1816 9 1 6.9240 2.2636 1.4420 10 6 5.8224 4.0017 2.0453 11 7 4.8124 4.7966 1.7715 12 14 6.8293 4.2709 3.5956 13 1 7.9025 3.2474 3.6727 14 1 7.4375 5.6252 3.5616 15 1 5.9478 4.1539 4.7849 16 6 6.1415 2.7497 -1.1623 17 8 5.5375 2.6914 -2.2165 18 6 7.6145 2.7448 -1.1562 19 6 8.4993 2.9564 -0.0011 20 6 9.7516 2.8626 -0.4736 21 8 9.7072 2.6118 -1.7914 22 6 8.4434 2.5424 -2.2215 23 6 8.0081 2.2789 -3.6400 24 6 7.8684 3.5876 -4.3740 25 8 8.0993 4.6276 -3.8038 26 8 7.4935 3.5977 -5.6628 27 6 7.3855 4.8940 -6.3078 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7806 0.8892 33 1 3.6107 3.2357 0.8906 34 1 3.6100 3.2368 -0.8893 35 1 4.5895 5.5230 2.3745 36 1 8.2020 3.1480 1.0193 37 1 10.6519 2.9686 0.1135 38 1 7.0490 1.7608 -3.6353 39 1 8.7530 1.6598 -4.1397 40 1 6.6473 5.5006 -5.7833 41 1 8.3531 5.3952 -6.2804 42 1 7.0748 4.7596 -7.3439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597331771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:47 Heat of formation + Delta-G solvation = -174.323656 kcal Electronic energy + Delta-G solvation = -30224.964892 eV Core-core repulsion = 25752.370020 eV Total energy + Delta-G solvation = -4472.594872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.93304 -40.05121 -40.04579 -38.42905 -36.27072 -36.16415 -35.00273 -32.62141 -32.02782 -31.85358 -30.40070 -28.19151 -27.53733 -26.51388 -25.21342 -24.01901 -21.79368 -21.32305 -20.56061 -19.72250 -19.00539 -17.66679 -17.47866 -17.21663 -16.41876 -16.26317 -16.21522 -16.15519 -15.71326 -15.38551 -15.20239 -14.61713 -14.44145 -13.75662 -13.63246 -13.60324 -13.38527 -13.23256 -12.95672 -12.47820 -12.36875 -12.19466 -12.12960 -12.00509 -11.89047 -11.69298 -11.29068 -11.20331 -11.09913 -10.63980 -10.61442 -10.54248 -10.41407 -10.25114 -10.08956 -10.01395 -9.05658 -8.96135 -8.69839 -8.05116 -7.42215 -6.40987 -4.32204 1.88632 2.53127 2.66998 2.86845 2.95561 3.04611 3.09056 3.15234 3.17976 3.44084 3.99525 4.43812 4.68343 4.86924 4.90068 5.11308 5.20136 5.23664 5.28222 5.29998 5.30570 5.31798 5.60335 5.62282 5.63401 5.80411 5.81994 5.88582 6.02793 6.26735 6.33724 6.49912 6.54963 6.64920 6.73375 6.91514 7.16185 7.27394 7.43444 7.65523 7.96895 8.01634 8.18599 8.26671 8.96719 9.36885 9.81963 10.61024 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008220 B = 0.004676 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.667477 B = 5986.060273 C = 8282.244871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.504 6.504 5 C -0.125 4.125 6 C 0.133 3.867 7 N -0.429 5.429 8 C -0.352 4.352 9 H 0.096 0.904 10 C 0.052 3.948 11 N -0.856 5.856 12 Si 0.908 3.092 13 H -0.263 1.263 14 H -0.277 1.277 15 H -0.278 1.278 16 C 0.549 3.451 17 O -0.601 6.601 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.069 4.069 21 O -0.182 6.182 22 C 0.027 3.973 23 C -0.024 4.024 24 C 0.471 3.529 25 O -0.494 6.494 26 O -0.361 6.361 27 C 0.037 3.963 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.063 0.937 35 H 0.272 0.728 36 H 0.182 0.818 37 H 0.200 0.800 38 H 0.148 0.852 39 H 0.115 0.885 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.217 -7.428 -6.012 10.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.391 6.391 5 C -0.164 4.164 6 C 0.010 3.990 7 N -0.146 5.146 8 C -0.480 4.480 9 H 0.113 0.887 10 C -0.156 4.156 11 N -0.490 5.490 12 Si 0.734 3.266 13 H -0.187 1.187 14 H -0.202 1.202 15 H -0.204 1.204 16 C 0.340 3.660 17 O -0.488 6.488 18 C -0.167 4.167 19 C -0.180 4.180 20 C -0.135 4.135 21 O -0.079 6.079 22 C -0.025 4.025 23 C -0.061 4.061 24 C 0.313 3.687 25 O -0.380 6.380 26 O -0.278 6.278 27 C -0.057 4.057 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.199 0.801 37 H 0.216 0.784 38 H 0.166 0.834 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.854 -6.648 -6.428 9.678 hybrid contribution 0.099 0.652 1.158 1.333 sum 2.952 -5.996 -5.269 8.511 Atomic orbital electron populations 1.23162 0.77394 1.03001 1.02338 1.86537 1.22729 1.34461 1.84691 1.24073 0.92385 0.80875 0.71764 1.90658 1.67259 1.36217 1.44970 1.21945 0.85881 1.03485 1.05117 1.21198 0.82389 0.90401 1.05053 1.43015 1.04105 1.62620 1.04845 1.19530 1.19741 1.12156 0.96526 0.88670 1.25672 0.95889 0.94748 0.99306 1.69792 1.25373 1.16620 1.37243 0.86181 0.80121 0.78931 0.81407 1.18748 1.20202 1.20386 1.17570 0.85220 0.79189 0.84069 1.90595 1.70055 1.56707 1.31424 1.21250 0.94957 1.07734 0.92718 1.23975 0.90351 1.02081 1.01584 1.23906 1.00128 1.08577 0.80854 1.83583 1.28360 1.70707 1.25253 1.21370 0.81428 1.05372 0.94319 1.19638 1.06036 0.93551 0.86899 1.23370 0.73103 0.92005 0.80228 1.90706 1.45333 1.34582 1.67343 1.86454 1.80025 1.35198 1.26124 1.23211 1.02315 0.82923 0.97206 0.92196 0.88645 0.92164 0.88468 0.87803 0.86924 0.91808 0.91720 0.80101 0.78374 0.83414 0.86710 0.91782 0.92183 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.90 10.56 -39.25 -0.41 -6.31 16 3 C 0.47 8.85 7.96 36.01 0.29 9.14 16 4 O -0.50 -10.95 15.73 -18.75 -0.29 -11.25 16 5 C -0.13 -2.44 6.10 -27.88 -0.17 -2.61 16 6 C 0.13 3.17 4.16 -4.04 -0.02 3.16 16 7 N -0.43 -10.53 2.46 -116.07 -0.29 -10.82 16 8 C -0.35 -8.43 6.45 -14.99 -0.10 -8.53 16 9 H 0.10 2.15 5.78 -52.49 -0.30 1.84 16 10 C 0.05 1.26 5.34 -17.46 -0.09 1.17 16 11 N -0.86 -22.67 11.40 55.50 0.63 -22.03 16 12 Si 0.91 18.52 28.99 -169.99 -4.93 13.59 16 13 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 16 C 0.55 13.45 7.59 -12.58 -0.10 13.36 16 17 O -0.60 -15.23 14.60 5.24 0.08 -15.15 16 18 C -0.16 -3.57 6.16 -103.28 -0.64 -4.21 16 19 C -0.16 -3.19 9.22 -37.45 -0.35 -3.54 16 20 C -0.07 -1.15 12.03 29.30 0.35 -0.79 16 21 O -0.18 -3.24 10.52 7.59 0.08 -3.16 16 22 C 0.03 0.53 5.87 -34.94 -0.21 0.32 16 23 C -0.02 -0.39 5.75 -29.04 -0.17 -0.56 16 24 C 0.47 8.49 7.95 36.01 0.29 8.78 16 25 O -0.49 -10.70 15.78 -18.75 -0.30 -10.99 16 26 O -0.36 -5.53 10.56 -39.25 -0.41 -5.95 16 27 C 0.04 0.46 10.56 101.05 1.07 1.52 16 28 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 32 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 33 H 0.11 2.93 5.96 -51.93 -0.31 2.62 16 34 H 0.06 1.65 7.49 -51.93 -0.39 1.26 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.18 3.64 4.54 -52.49 -0.24 3.41 16 37 H 0.20 2.35 8.06 -52.48 -0.42 1.92 16 38 H 0.15 2.43 6.66 -51.93 -0.35 2.09 16 39 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 41 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -33.52 367.66 -4.02 -37.54 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -4.95 Total: 10.28 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 1.23 Total: 18.71 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.35 Total: -32.85 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -1.26 Total: -52.81 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.93 Total: 13.59 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.52 -4.02 -37.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597331771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.782 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds