Wall clock time and date at job start Tue Mar 31 2020 22:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00133 * 2 1 4 4 O 1.20828 * 120.00148 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00206 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46967 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.46814 * 179.97438 * 6 5 3 8 8 C 1.36966 * 120.00111 * 264.83248 * 7 6 5 9 9 H 1.07995 * 119.99842 * 125.91898 * 8 7 6 10 10 C 1.38975 * 119.99903 * 305.92116 * 8 7 6 11 11 N 1.31413 * 119.99993 * 4.50110 * 10 8 7 12 12 Si 1.86804 * 119.99958 * 184.50183 * 10 8 7 13 13 H 1.48501 * 109.46957 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46828 * 120.00108 * 12 10 8 15 15 H 1.48499 * 109.47111 * 239.99830 * 12 10 8 16 16 C 1.34776 * 119.99917 * 84.83748 * 7 6 5 17 17 O 1.21641 * 120.00188 * 3.68515 * 16 7 6 18 18 C 1.47302 * 120.00027 * 183.69358 * 16 7 6 19 19 C 1.47033 * 127.19329 * 352.72752 * 18 16 7 20 20 C 1.34177 * 105.95889 * 179.97438 * 19 18 16 21 21 O 1.34216 * 109.14101 * 359.76877 * 20 19 18 22 22 C 1.33675 * 110.91345 * 0.39125 * 21 20 19 23 23 C 1.50697 * 125.80935 * 179.87516 * 22 21 20 24 24 C 1.50700 * 109.47748 * 269.69197 * 23 22 21 25 25 O 1.20831 * 119.99396 * 0.02562 * 24 23 22 26 26 O 1.34226 * 120.00520 * 179.72706 * 24 23 22 27 27 C 1.45193 * 117.00243 * 180.27392 * 26 24 23 28 28 H 1.09003 * 109.47104 * 60.00308 * 1 2 3 29 29 H 1.08999 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47287 * 299.99657 * 1 2 3 31 31 H 1.08999 * 109.47177 * 60.00010 * 5 3 2 32 32 H 1.09002 * 109.47002 * 299.99597 * 5 3 2 33 33 H 1.08999 * 109.47340 * 59.99894 * 6 5 3 34 34 H 1.09001 * 109.47244 * 299.99715 * 6 5 3 35 35 H 0.97002 * 120.00029 * 179.97438 * 11 10 8 36 36 H 1.07998 * 127.02439 * 359.97438 * 19 18 16 37 37 H 1.08003 * 125.42968 * 179.97438 * 20 19 18 38 38 H 1.09007 * 109.46568 * 149.69352 * 23 22 21 39 39 H 1.08998 * 109.47426 * 29.69459 * 23 22 21 40 40 H 1.09000 * 109.47357 * 300.00461 * 27 26 24 41 41 H 1.09004 * 109.46940 * 59.99912 * 27 26 24 42 42 H 1.08994 * 109.47261 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4630 2.8188 0.0002 8 6 6.1414 2.9607 1.1816 9 1 6.9240 2.2636 1.4420 10 6 5.8224 4.0017 2.0453 11 7 4.8124 4.7966 1.7715 12 14 6.8293 4.2709 3.5956 13 1 7.9025 3.2474 3.6727 14 1 7.4375 5.6252 3.5616 15 1 5.9478 4.1539 4.7849 16 6 6.1415 2.7497 -1.1623 17 8 5.5375 2.6914 -2.2165 18 6 7.6145 2.7448 -1.1562 19 6 8.4993 2.9564 -0.0011 20 6 9.7516 2.8626 -0.4736 21 8 9.7072 2.6118 -1.7914 22 6 8.4434 2.5424 -2.2215 23 6 8.0081 2.2789 -3.6400 24 6 7.8684 3.5876 -4.3740 25 8 8.0993 4.6276 -3.8038 26 8 7.4935 3.5977 -5.6628 27 6 7.3855 4.8940 -6.3078 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7806 0.8892 33 1 3.6107 3.2357 0.8906 34 1 3.6100 3.2368 -0.8893 35 1 4.5895 5.5230 2.3745 36 1 8.2020 3.1480 1.0193 37 1 10.6519 2.9686 0.1135 38 1 7.0490 1.7608 -3.6353 39 1 8.7530 1.6598 -4.1397 40 1 6.6473 5.5006 -5.7833 41 1 8.3531 5.3952 -6.2804 42 1 7.0748 4.7596 -7.3439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597331771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:46 Heat of formation + Delta-G solvation = -195.712451 kcal Electronic energy + Delta-G solvation = -30225.892380 eV Core-core repulsion = 25752.370020 eV Total energy + Delta-G solvation = -4473.522360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.38198 -41.55301 -41.40935 -40.24298 -37.67541 -37.58681 -36.84664 -34.20843 -33.73913 -33.34316 -32.07465 -29.45578 -28.74600 -27.78541 -27.01137 -25.65231 -23.38680 -22.67614 -22.04985 -21.36253 -20.72175 -19.19511 -18.83452 -18.72020 -17.86267 -17.67199 -17.61697 -17.55629 -17.43117 -16.91940 -16.60598 -16.33643 -16.05651 -15.42015 -15.13407 -14.95971 -14.75354 -14.47514 -14.38636 -14.13748 -13.85425 -13.74082 -13.62344 -13.57783 -13.09465 -12.99716 -12.98870 -12.75258 -12.59131 -12.38102 -12.00803 -11.93785 -11.84237 -11.79296 -11.69648 -11.60145 -10.91829 -10.59308 -10.48637 -9.55716 -9.25556 -8.26955 -6.23634 0.38455 1.13290 1.14254 1.37924 1.46185 1.48393 1.59945 1.67247 1.69142 2.10735 2.29083 2.66196 2.96538 3.07335 3.54888 3.83085 3.89314 4.09092 4.12240 4.21149 4.27925 4.29420 4.30045 4.31436 4.32102 4.39926 4.49740 4.59272 4.66014 4.69415 4.86171 4.94516 5.09630 5.16121 5.26657 5.32155 5.38050 5.51616 5.67623 6.10925 6.20103 6.38587 6.66453 6.70342 7.08905 7.50366 7.95328 8.76206 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008220 B = 0.004676 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.667477 B = 5986.060273 C = 8282.244871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.474 3.526 4 O -0.539 6.539 5 C -0.113 4.113 6 C 0.141 3.859 7 N -0.441 5.441 8 C -0.349 4.349 9 H 0.112 0.888 10 C 0.002 3.998 11 N -0.903 5.903 12 Si 0.975 3.025 13 H -0.233 1.233 14 H -0.284 1.284 15 H -0.281 1.281 16 C 0.537 3.463 17 O -0.623 6.623 18 C -0.207 4.207 19 C -0.194 4.194 20 C -0.038 4.038 21 O -0.174 6.174 22 C 0.036 3.964 23 C -0.025 4.025 24 C 0.471 3.529 25 O -0.540 6.540 26 O -0.356 6.356 27 C 0.029 3.971 28 H 0.059 0.941 29 H 0.139 0.861 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.029 0.971 35 H 0.269 0.731 36 H 0.175 0.825 37 H 0.252 0.748 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.046 0.954 41 H 0.067 0.933 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.399 -9.436 -6.099 12.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.318 3.682 4 O -0.428 6.428 5 C -0.152 4.152 6 C 0.018 3.982 7 N -0.158 5.158 8 C -0.477 4.477 9 H 0.129 0.871 10 C -0.200 4.200 11 N -0.539 5.539 12 Si 0.797 3.203 13 H -0.156 1.156 14 H -0.210 1.210 15 H -0.207 1.207 16 C 0.329 3.671 17 O -0.512 6.512 18 C -0.212 4.212 19 C -0.212 4.212 20 C -0.103 4.103 21 O -0.070 6.070 22 C -0.017 4.017 23 C -0.062 4.062 24 C 0.315 3.685 25 O -0.429 6.429 26 O -0.273 6.273 27 C -0.064 4.064 28 H 0.078 0.922 29 H 0.157 0.843 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.106 0.894 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.192 0.808 37 H 0.268 0.732 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.042 -8.719 -6.536 12.007 hybrid contribution -0.630 1.251 1.057 1.755 sum 4.413 -7.468 -5.479 10.260 Atomic orbital electron populations 1.23580 0.74797 1.05891 1.02403 1.86504 1.25128 1.32278 1.83857 1.23829 0.92098 0.81265 0.71006 1.90650 1.67877 1.37570 1.46749 1.21683 0.86826 1.00470 1.06210 1.20900 0.82560 0.92807 1.01983 1.43239 1.04219 1.62950 1.05437 1.19922 1.19468 1.12265 0.96015 0.87058 1.26569 0.96603 0.94284 1.02587 1.69967 1.27540 1.17621 1.38813 0.85152 0.79142 0.78964 0.76995 1.15568 1.21031 1.20713 1.18045 0.86688 0.78699 0.83667 1.90550 1.70945 1.57756 1.31953 1.21283 0.93865 1.10864 0.95153 1.23904 0.91471 1.04828 1.01043 1.24748 1.00690 1.04738 0.80166 1.83636 1.27390 1.70049 1.25929 1.21721 0.81462 1.03515 0.94975 1.19811 1.07301 0.93329 0.85751 1.23722 0.71966 0.91930 0.80845 1.90686 1.47660 1.36175 1.68398 1.86449 1.79185 1.36782 1.24854 1.23553 1.02446 0.81633 0.98758 0.92220 0.84304 0.92151 0.87703 0.86167 0.89416 0.95287 0.92120 0.80780 0.73184 0.83909 0.81670 0.93542 0.91426 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.36 -11.27 10.56 -51.37 -0.54 -11.81 16 3 C 0.47 18.32 7.96 71.24 0.57 18.89 16 4 O -0.54 -24.34 15.73 21.96 0.35 -23.99 16 5 C -0.11 -4.53 6.10 29.85 0.18 -4.34 16 6 C 0.14 7.13 4.16 86.38 0.36 7.49 16 7 N -0.44 -22.51 2.46 -639.37 -1.57 -24.09 16 8 C -0.35 -17.02 6.45 84.07 0.54 -16.48 16 9 H 0.11 4.97 5.78 -2.91 -0.02 4.95 16 10 C 0.00 0.12 5.34 84.93 0.45 0.58 16 11 N -0.90 -50.10 11.40 21.67 0.25 -49.85 16 12 Si 0.98 37.98 28.99 68.60 1.99 39.97 16 13 H -0.23 -7.87 7.11 99.48 0.71 -7.16 16 14 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 15 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 16 C 0.54 27.23 7.59 86.63 0.66 27.89 16 17 O -0.62 -32.95 14.60 -4.16 -0.06 -33.01 16 18 C -0.21 -9.14 6.16 -18.99 -0.12 -9.26 16 19 C -0.19 -7.42 9.22 23.65 0.22 -7.21 16 20 C -0.04 -1.14 12.03 66.89 0.80 -0.34 16 21 O -0.17 -5.68 10.52 4.25 0.04 -5.64 16 22 C 0.04 1.35 5.87 25.28 0.15 1.50 16 23 C -0.03 -0.79 5.75 29.10 0.17 -0.62 16 24 C 0.47 16.74 7.95 71.24 0.57 17.31 16 25 O -0.54 -23.62 15.78 21.95 0.35 -23.27 16 26 O -0.36 -10.53 10.56 -51.38 -0.54 -11.07 16 27 C 0.03 0.68 10.56 113.37 1.20 1.87 16 28 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 29 H 0.14 1.97 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 31 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 32 H 0.12 4.38 8.14 -2.39 -0.02 4.36 16 33 H 0.09 4.86 5.96 -2.39 -0.01 4.85 16 34 H 0.03 1.61 7.49 -2.39 -0.02 1.59 16 35 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 36 H 0.18 6.81 4.54 -2.91 -0.01 6.80 16 37 H 0.25 4.55 8.06 -2.91 -0.02 4.52 16 38 H 0.14 4.65 6.66 -2.38 -0.02 4.63 16 39 H 0.17 3.32 8.14 -2.39 -0.02 3.31 16 40 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 41 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 42 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -78.18 367.66 8.27 -69.90 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 1.07 Total: 33.77 kcal Atomic # 6 Polarization: 32.13 SS G_CDS: 6.94 Total: 39.08 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -1.32 Total: -73.94 kcal Atomic # 8 Polarization: -108.38 SS G_CDS: -0.41 Total: -108.79 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 1.99 Total: 39.97 kcal Total: -78.18 8.27 -69.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597331771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.809 kcal (2) G-P(sol) polarization free energy of solvation -78.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds