Wall clock time and date at job start Tue Mar 31 2020 22:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32479 * 120.37787 * 2 1 4 4 C 1.32289 * 120.90751 * 179.97438 * 3 2 1 5 5 O 1.35452 * 119.16580 * 179.97438 * 4 3 2 6 6 N 1.32315 * 121.66952 * 359.97438 * 4 3 2 7 7 C 1.32758 * 120.65679 * 359.77070 * 6 4 3 8 8 O 1.35513 * 120.47390 * 180.26464 * 7 6 4 9 9 C 1.38187 * 120.37326 * 179.97438 * 2 1 3 10 10 C 1.50695 * 120.76880 * 359.97438 * 9 2 1 11 11 C 1.52999 * 109.46915 * 90.00322 * 10 9 2 12 12 C 1.50701 * 109.47319 * 180.02562 * 11 10 9 13 13 O 1.21293 * 120.00084 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00498 * 180.02562 * 12 11 10 15 15 C 1.37103 * 119.99431 * 359.97438 * 14 12 11 16 16 H 1.07994 * 120.00147 * 322.25662 * 15 14 12 17 17 C 1.38950 * 119.99408 * 142.25447 * 15 14 12 18 18 N 1.31412 * 119.99700 * 157.64406 * 17 15 14 19 19 Si 1.86798 * 120.00216 * 337.64257 * 17 15 14 20 20 H 1.48495 * 109.47559 * 95.70618 * 19 17 15 21 21 H 1.48507 * 109.47089 * 215.70953 * 19 17 15 22 22 H 1.48502 * 109.46895 * 335.70044 * 19 17 15 23 23 C 1.46494 * 120.00280 * 180.02562 * 14 12 11 24 24 C 1.52998 * 109.47565 * 83.61857 * 23 14 12 25 25 C 1.50701 * 109.47334 * 179.97438 * 24 23 14 26 26 O 1.20826 * 119.99659 * 0.02562 * 25 24 23 27 27 O 1.34224 * 119.99834 * 179.97438 * 25 24 23 28 28 H 1.08997 * 109.47127 * 270.02041 * 1 2 3 29 29 H 1.08998 * 109.47070 * 30.02216 * 1 2 3 30 30 H 1.09001 * 109.47128 * 150.02462 * 1 2 3 31 31 H 0.96699 * 113.99554 * 90.00444 * 5 4 3 32 32 H 0.96699 * 114.00078 * 270.21395 * 8 7 6 33 33 H 1.09007 * 109.47358 * 330.00446 * 10 9 2 34 34 H 1.09000 * 109.47809 * 210.00466 * 10 9 2 35 35 H 1.08996 * 109.47321 * 60.00312 * 11 10 9 36 36 H 1.09001 * 109.47111 * 299.99860 * 11 10 9 37 37 H 0.97002 * 119.99665 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.47045 * 203.62149 * 23 14 12 39 39 H 1.08997 * 109.46747 * 323.61446 * 23 14 12 40 40 H 1.09001 * 109.47178 * 300.00211 * 24 23 14 41 41 H 1.08999 * 109.46926 * 60.00133 * 24 23 14 42 42 H 0.96701 * 117.00067 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1770 1.1429 0.0000 4 6 3.4998 1.1551 0.0005 5 8 4.1490 2.3440 0.0000 6 7 4.2049 0.0355 0.0015 7 6 3.5992 -1.1459 0.0067 8 8 4.3250 -2.2902 0.0131 9 6 2.2058 -1.1922 0.0005 10 6 1.4785 -2.5120 0.0017 11 6 1.2319 -2.9597 -1.4404 12 6 0.5040 -4.2792 -1.4393 13 8 0.2108 -4.8093 -0.3885 14 7 0.1787 -4.8705 -2.6060 15 6 0.5096 -4.2710 -3.7938 16 1 0.4477 -3.1974 -3.8926 17 6 0.9247 -5.0451 -4.8706 18 7 0.8222 -4.5771 -6.0943 19 14 1.6283 -6.7506 -4.5786 20 1 0.5544 -7.7635 -4.7396 21 1 2.7095 -7.0150 -5.5618 22 1 2.1808 -6.8292 -3.2024 23 6 -0.5294 -6.1529 -2.6049 24 6 -2.0310 -5.9064 -2.4455 25 6 -2.7594 -7.2257 -2.4450 26 8 -2.1409 -8.2573 -2.5599 27 8 -4.0951 -7.2547 -2.3159 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 4.3372 2.6897 0.8832 32 1 4.5394 -2.6250 -0.8684 33 1 0.5237 -2.4004 0.5158 34 1 2.0826 -3.2595 0.5159 35 1 2.1865 -3.0714 -1.9545 36 1 0.6276 -2.2123 -1.9545 37 1 1.1123 -5.1173 -6.8459 38 1 -0.3442 -6.6710 -3.5459 39 1 -0.1716 -6.7647 -1.7768 40 1 -2.2162 -5.3883 -1.5045 41 1 -2.3887 -5.2946 -3.2736 42 1 -4.5178 -8.1244 -2.3208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599941371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:45 Heat of formation + Delta-G solvation = -152.478432 kcal Electronic energy + Delta-G solvation = -29660.218028 eV Core-core repulsion = 25220.863187 eV Total energy + Delta-G solvation = -4439.354841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49656 -40.07792 -39.05709 -38.29119 -37.16538 -36.05305 -35.38028 -34.52739 -33.23002 -32.39417 -31.15626 -29.97515 -28.41225 -25.56135 -25.14899 -23.94688 -22.99600 -21.86083 -20.78798 -19.39133 -19.13843 -18.64425 -18.04130 -17.96440 -17.06991 -16.49765 -16.34398 -15.92698 -15.70033 -15.48040 -15.03829 -14.83174 -14.45375 -13.99019 -13.92195 -13.58062 -13.32147 -13.12719 -12.83272 -12.67670 -12.56288 -12.51155 -12.41536 -12.11658 -11.95430 -11.76599 -11.62065 -11.35785 -11.20774 -10.94457 -10.76256 -10.68221 -10.46074 -10.36723 -10.28059 -10.02749 -9.40941 -9.33742 -9.09524 -8.72513 -8.04013 -6.65466 -4.27959 0.62306 0.82079 2.45349 2.80295 3.01001 3.15086 3.18938 3.22026 3.23733 3.56359 3.64635 4.01032 4.17967 4.24374 4.68241 4.75071 4.78631 5.03784 5.18060 5.28222 5.42852 5.44286 5.48353 5.52648 5.66863 5.72078 5.75827 5.90548 5.98731 6.06618 6.10483 6.25673 6.34313 6.45180 6.51094 6.67392 6.67639 7.14166 7.25037 7.30352 7.87522 7.88012 8.04064 8.10036 8.76440 9.14188 9.47076 10.44062 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.003193 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.345482 B = 8766.508755 C = 9688.836745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.210 3.790 3 N -0.530 5.530 4 C 0.508 3.492 5 O -0.457 6.457 6 N -0.552 5.552 7 C 0.386 3.614 8 O -0.470 6.470 9 C -0.198 4.198 10 C -0.057 4.057 11 C -0.112 4.112 12 C 0.481 3.519 13 O -0.594 6.594 14 N -0.461 5.461 15 C -0.356 4.356 16 H 0.107 0.893 17 C 0.073 3.927 18 N -0.851 5.851 19 Si 0.866 3.134 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.259 1.259 23 C 0.114 3.886 24 C -0.123 4.123 25 C 0.484 3.516 26 O -0.520 6.520 27 O -0.520 6.520 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.409 0.591 32 H 0.413 0.587 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.277 0.723 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.869 5.934 9.272 11.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.065 3.935 3 N -0.257 5.257 4 C 0.203 3.797 5 O -0.260 6.260 6 N -0.289 5.289 7 C 0.198 3.802 8 O -0.278 6.278 9 C -0.203 4.203 10 C -0.095 4.095 11 C -0.151 4.151 12 C 0.271 3.729 13 O -0.479 6.479 14 N -0.181 5.181 15 C -0.483 4.483 16 H 0.125 0.875 17 C -0.136 4.136 18 N -0.485 5.485 19 Si 0.692 3.308 20 H -0.195 1.195 21 H -0.212 1.212 22 H -0.183 1.183 23 C -0.009 4.009 24 C -0.162 4.162 25 C 0.327 3.673 26 O -0.408 6.408 27 O -0.332 6.332 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.268 0.732 32 H 0.273 0.727 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -1.123 6.648 9.500 11.649 hybrid contribution 0.095 -2.115 -0.352 2.146 sum -1.028 4.533 9.148 10.261 Atomic orbital electron populations 1.20916 0.86932 1.04975 1.04073 1.21365 0.97577 0.85853 0.88689 1.67814 1.08859 1.31386 1.17675 1.19756 0.83717 0.84491 0.91745 1.84732 1.76222 1.30879 1.34168 1.67362 1.44072 0.98731 1.18734 1.18958 0.86549 0.84526 0.90122 1.84666 1.73710 1.34655 1.34798 1.21756 0.94083 0.98898 1.05606 1.20257 1.00619 0.90875 0.97783 1.21315 1.02155 0.96024 0.95655 1.20365 0.81347 0.87840 0.83315 1.90574 1.58892 1.67001 1.31483 1.43725 1.48899 1.19441 1.06075 1.19054 1.47754 0.94524 0.86936 0.87535 1.25333 0.95040 0.98555 0.94693 1.69765 1.41400 1.39025 0.98286 0.87086 0.79833 0.84349 0.79493 1.19461 1.21203 1.18292 1.21413 0.88716 0.87903 1.02885 1.21761 0.96103 0.92042 1.06273 1.23716 0.80006 0.92536 0.71081 1.90705 1.68057 1.36223 1.45822 1.84576 1.23227 1.40057 1.85298 0.89250 0.89538 0.88894 0.73208 0.72651 0.89556 0.89191 0.89392 0.89524 0.91228 0.90285 0.90558 0.87332 0.86855 0.73828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.44 36.01 0.34 -0.77 16 2 C 0.21 2.70 6.82 -82.33 -0.56 2.14 16 3 N -0.53 -7.37 10.40 -11.01 -0.11 -7.49 16 4 C 0.51 7.13 8.71 -91.28 -0.80 6.33 16 5 O -0.46 -5.29 13.64 -18.05 -0.25 -5.54 16 6 N -0.55 -8.22 10.49 -14.79 -0.16 -8.38 16 7 C 0.39 5.43 7.81 -16.71 -0.13 5.30 16 8 O -0.47 -6.00 12.74 -18.23 -0.23 -6.24 16 9 C -0.20 -2.65 5.18 -104.20 -0.54 -3.19 16 10 C -0.06 -0.78 3.79 -27.89 -0.11 -0.89 16 11 C -0.11 -1.78 4.26 -27.88 -0.12 -1.90 16 12 C 0.48 9.53 7.58 -10.98 -0.08 9.44 16 13 O -0.59 -12.74 15.67 5.55 0.09 -12.65 16 14 N -0.46 -9.82 2.18 -114.82 -0.25 -10.07 16 15 C -0.36 -8.23 9.05 -14.93 -0.14 -8.37 16 16 H 0.11 2.54 7.23 -52.49 -0.38 2.16 16 17 C 0.07 1.78 5.26 -17.47 -0.09 1.69 16 18 N -0.85 -21.91 13.96 55.50 0.77 -21.14 16 19 Si 0.87 19.59 25.06 -169.99 -4.26 15.33 16 20 H -0.27 -6.14 6.69 56.52 0.38 -5.77 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 23 C 0.11 2.38 3.22 -4.05 -0.01 2.37 16 24 C -0.12 -2.13 6.09 -27.88 -0.17 -2.30 16 25 C 0.48 8.00 8.33 36.01 0.30 8.30 16 26 O -0.52 -10.15 16.74 -18.75 -0.31 -10.46 16 27 O -0.52 -6.61 13.42 -39.24 -0.53 -7.14 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.93 6.03 -51.93 -0.31 0.61 16 31 H 0.41 2.41 9.06 45.56 0.41 2.83 16 32 H 0.41 3.69 9.06 45.56 0.41 4.10 16 33 H 0.09 1.14 6.76 -51.93 -0.35 0.79 16 34 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 35 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 36 H 0.09 1.33 6.99 -51.93 -0.36 0.96 16 37 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 38 H 0.08 1.77 3.61 -51.93 -0.19 1.58 16 39 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 40 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 41 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 42 H 0.40 3.21 9.10 45.56 0.41 3.63 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -33.39 362.72 -4.29 -37.67 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -2.41 Total: 12.49 kcal Atomic # 6 Polarization: 20.25 SS G_CDS: -2.10 Total: 18.15 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.25 Total: -47.08 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -1.23 Total: -42.02 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.26 Total: 15.33 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.39 -4.29 -37.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599941371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.807 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds