Wall clock time and date at job start Tue Mar 31 2020 22:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47533 * 2 1 4 4 C 1.52999 * 109.47056 * 239.99758 * 2 1 3 5 5 O 1.45204 * 109.47078 * 119.99933 * 2 1 3 6 6 C 1.34712 * 117.00204 * 60.00209 * 5 2 1 7 7 O 1.21492 * 119.99771 * 359.97438 * 6 5 2 8 8 C 1.47634 * 120.00516 * 180.02562 * 6 5 2 9 9 C 1.40929 * 126.27311 * 180.02562 * 8 6 5 10 10 C 1.37119 * 105.45774 * 179.97438 * 9 8 6 11 11 C 1.47075 * 126.65157 * 179.97438 * 10 9 8 12 12 O 1.21663 * 120.00510 * 284.25963 * 11 10 9 13 13 N 1.34777 * 119.99554 * 104.53986 * 11 10 9 14 14 C 1.36844 * 120.00253 * 182.56236 * 13 11 10 15 15 H 1.07995 * 120.00565 * 131.12229 * 14 13 11 16 16 C 1.39054 * 119.99482 * 311.13242 * 14 13 11 17 17 N 1.31367 * 120.00388 * 350.39893 * 16 14 13 18 18 Si 1.86805 * 119.99887 * 170.40420 * 16 14 13 19 19 H 1.48497 * 109.47019 * 59.99668 * 18 16 14 20 20 H 1.48492 * 109.46980 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46971 * 300.00099 * 18 16 14 22 22 C 1.46503 * 120.00022 * 2.55693 * 13 11 10 23 23 C 1.50704 * 109.47114 * 86.61230 * 22 13 11 24 24 O 1.20827 * 119.99554 * 359.97438 * 23 22 13 25 25 O 1.34225 * 120.00484 * 179.97438 * 23 22 13 26 26 N 1.36805 * 106.69339 * 0.25832 * 10 9 8 27 27 H 0.96997 * 125.06119 * 179.73766 * 26 10 9 28 28 N 1.28456 * 109.87870 * 359.55124 * 26 10 9 29 29 H 1.09004 * 109.47029 * 299.99962 * 1 2 3 30 30 H 1.09001 * 109.46910 * 60.00004 * 1 2 3 31 31 H 1.09001 * 109.47227 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47806 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47019 * 299.99929 * 3 2 1 34 34 H 1.08999 * 109.47386 * 59.99915 * 3 2 1 35 35 H 1.08994 * 109.47270 * 300.00001 * 4 2 1 36 36 H 1.09001 * 109.47067 * 60.00334 * 4 2 1 37 37 H 1.09009 * 109.47114 * 179.97438 * 4 2 1 38 38 H 1.08000 * 127.27146 * 359.91989 * 9 8 6 39 39 H 0.96995 * 120.00334 * 185.02693 * 17 16 14 40 40 H 1.09005 * 109.47323 * 206.60849 * 22 13 11 41 41 H 1.08997 * 109.47135 * 326.60911 * 22 13 11 42 42 H 0.96698 * 117.00067 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6520 -1.9730 1.3385 7 8 0.9508 -2.5101 0.5043 8 6 2.1065 -2.7323 2.5202 9 6 1.8092 -4.0788 2.8111 10 6 2.4418 -4.3446 3.9982 11 6 2.4376 -5.6211 4.7288 12 8 1.4523 -5.9591 5.3572 13 7 3.5275 -6.4137 4.7066 14 6 3.5055 -7.6252 5.3426 15 1 3.8427 -8.5121 4.8268 16 6 3.0488 -7.7142 6.6530 17 7 2.8174 -6.6211 7.3437 18 14 2.7644 -9.3885 7.4312 19 1 4.0381 -10.1519 7.4424 20 1 2.2818 -9.2113 8.8242 21 1 1.7479 -10.1333 6.6455 22 6 4.7357 -5.9783 4.0016 23 6 5.5830 -5.1425 4.9260 24 8 5.2151 -4.9317 6.0574 25 8 6.7463 -4.6322 4.4925 26 7 3.0724 -3.1903 4.3745 27 1 3.5989 -3.0807 5.1817 28 7 2.8665 -2.2744 3.4977 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 1.2089 -4.7577 2.2236 39 1 2.5693 -6.6820 8.2794 40 1 5.3028 -6.8516 3.6791 41 1 4.4547 -5.3858 3.1310 42 1 7.2548 -4.1023 5.1215 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603500849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:34 Heat of formation + Delta-G solvation = -138.616799 kcal Electronic energy + Delta-G solvation = -30320.276896 eV Core-core repulsion = 25881.523140 eV Total energy + Delta-G solvation = -4438.753756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.82767 -41.67817 -41.18681 -39.83485 -38.01413 -37.00706 -36.12475 -35.09668 -34.06223 -33.08644 -32.01921 -29.37169 -28.32545 -28.25580 -27.07849 -26.18432 -24.24678 -22.83468 -22.22437 -21.73100 -20.47147 -19.84662 -18.99033 -18.44510 -18.19889 -17.48850 -17.48440 -17.34126 -16.94735 -16.74830 -16.42500 -16.15066 -15.78785 -15.43152 -15.22879 -15.20452 -14.65926 -14.55456 -14.27927 -13.83722 -13.44481 -13.34732 -13.10141 -13.08046 -12.90086 -12.88930 -12.83723 -12.71038 -12.47739 -12.36417 -12.30858 -12.26535 -12.16155 -11.51684 -11.38688 -11.21693 -10.86651 -10.78459 -10.70344 -10.22774 -9.35786 -8.20076 -6.14759 0.11778 0.61371 1.15290 1.34409 1.42423 1.49537 1.53126 1.61491 1.96285 2.02187 2.32248 2.45232 2.85810 3.18800 3.24912 3.69421 3.76292 3.83177 3.93558 3.99548 4.15431 4.20731 4.44562 4.49629 4.60588 4.63143 4.66334 4.81094 4.83990 4.91154 4.91978 5.06011 5.15919 5.30765 5.32064 5.44307 5.46314 5.58316 5.72349 6.10484 6.47416 6.77216 6.83908 6.93067 7.14443 7.41875 8.01850 8.84787 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.003082 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.041276 B = 9084.264662 C = 9826.268756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.102 3.898 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.343 6.343 6 C 0.568 3.432 7 O -0.503 6.503 8 C -0.016 4.016 9 C -0.137 4.137 10 C 0.001 3.999 11 C 0.539 3.461 12 O -0.549 6.549 13 N -0.428 5.428 14 C -0.372 4.372 15 H 0.101 0.899 16 C 0.020 3.980 17 N -0.844 5.844 18 Si 0.978 3.022 19 H -0.256 1.256 20 H -0.293 1.293 21 H -0.272 1.272 22 C 0.105 3.895 23 C 0.449 3.551 24 O -0.518 6.518 25 O -0.512 6.512 26 N -0.352 5.352 27 H 0.453 0.547 28 N -0.219 5.219 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.180 0.820 39 H 0.258 0.742 40 H 0.140 0.860 41 H 0.117 0.883 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.645 12.441 -14.765 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.067 3.933 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.259 6.259 6 C 0.411 3.589 7 O -0.390 6.390 8 C -0.172 4.172 9 C -0.165 4.165 10 C -0.128 4.128 11 C 0.325 3.675 12 O -0.426 6.426 13 N -0.149 5.149 14 C -0.499 4.499 15 H 0.118 0.882 16 C -0.190 4.190 17 N -0.476 5.476 18 Si 0.802 3.198 19 H -0.180 1.180 20 H -0.219 1.219 21 H -0.197 1.197 22 C -0.020 4.020 23 C 0.289 3.711 24 O -0.405 6.405 25 O -0.326 6.326 26 N -0.072 5.072 27 H 0.300 0.700 28 N -0.059 5.059 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.197 0.803 39 H 0.067 0.933 40 H 0.158 0.842 41 H 0.135 0.865 42 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 3.996 12.986 -14.216 19.665 hybrid contribution -0.037 -1.038 1.655 1.954 sum 3.959 11.949 -12.561 17.783 Atomic orbital electron populations 1.22492 0.93722 1.03735 1.03974 1.22675 0.94943 0.93512 0.82175 1.21875 1.02447 0.90605 1.04271 1.22478 1.01951 1.02136 0.97173 1.86682 1.69382 1.23372 1.46480 1.19224 0.76492 0.80548 0.82681 1.90767 1.35571 1.70687 1.41984 1.20783 1.05954 0.93801 0.96710 1.21781 1.03579 0.95282 0.95884 1.21902 1.02300 0.90302 0.98247 1.17277 0.84263 0.83146 0.82816 1.90684 1.35425 1.73896 1.42562 1.42904 1.06709 1.17157 1.48117 1.19444 1.49365 0.85286 0.95823 0.88162 1.26331 0.94699 1.00706 0.97253 1.70003 1.39915 1.29937 1.07770 0.85262 0.79132 0.78719 0.76697 1.18037 1.21905 1.19694 1.21482 0.87277 1.00035 0.93185 1.24739 0.80339 0.77884 0.88132 1.90856 1.71847 1.56535 1.21275 1.84519 1.33308 1.65131 1.49617 1.44022 1.37651 1.06163 1.19398 0.69990 1.73601 1.16127 1.16656 0.99472 0.92087 0.88364 0.91992 0.91235 0.87621 0.91574 0.91891 0.88463 0.91641 0.80309 0.93288 0.84245 0.86486 0.71906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 8.37 71.98 0.60 -2.89 16 2 C 0.10 2.04 1.13 -10.80 -0.01 2.02 16 3 C -0.14 -1.85 8.85 71.98 0.64 -1.21 16 4 C -0.18 -3.28 8.37 71.98 0.60 -2.68 16 5 O -0.34 -9.35 9.89 -56.22 -0.56 -9.91 16 6 C 0.57 17.58 7.28 70.30 0.51 18.09 16 7 O -0.50 -16.13 12.45 19.86 0.25 -15.89 16 8 C -0.02 -0.53 7.13 42.26 0.30 -0.23 16 9 C -0.14 -4.95 10.75 22.67 0.24 -4.70 16 10 C 0.00 0.03 5.08 40.42 0.21 0.23 16 11 C 0.54 26.65 6.80 86.56 0.59 27.24 16 12 O -0.55 -32.59 14.82 -4.23 -0.06 -32.66 16 13 N -0.43 -19.80 1.99 -643.70 -1.28 -21.08 16 14 C -0.37 -18.98 9.13 84.11 0.77 -18.22 16 15 H 0.10 4.69 7.85 -2.91 -0.02 4.67 16 16 C 0.02 1.05 4.66 84.96 0.40 1.45 16 17 N -0.84 -49.57 11.45 21.68 0.25 -49.32 16 18 Si 0.98 43.12 29.57 68.60 2.03 45.14 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 C 0.11 3.65 5.77 85.63 0.49 4.15 16 23 C 0.45 15.52 8.15 71.24 0.58 16.11 16 24 O -0.52 -22.67 16.66 21.96 0.37 -22.31 16 25 O -0.51 -12.78 13.42 -51.37 -0.69 -13.47 16 26 N -0.35 -12.66 6.81 -48.70 -0.33 -12.99 16 27 H 0.45 16.01 8.38 -220.00 -1.84 14.17 16 28 N -0.22 -7.43 12.22 -48.50 -0.59 -8.02 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.50 5.88 -2.39 -0.01 1.49 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.46 5.88 -2.39 -0.01 1.44 16 36 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.18 5.96 8.06 -2.91 -0.02 5.94 16 39 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 40 H 0.14 4.09 8.01 -2.38 -0.02 4.07 16 41 H 0.12 3.51 6.97 -2.39 -0.02 3.49 16 42 H 0.42 7.00 9.10 -74.06 -0.67 6.33 16 Total: -1.00 -75.17 367.52 3.88 -71.28 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -1.41 Total: 29.86 kcal Atomic # 6 Polarization: 33.45 SS G_CDS: 5.92 Total: 39.36 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -1.96 Total: -91.41 kcal Atomic # 8 Polarization: -93.54 SS G_CDS: -0.70 Total: -94.24 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -75.17 3.88 -71.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603500849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.333 kcal (2) G-P(sol) polarization free energy of solvation -75.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds