Wall clock time and date at job start Tue Mar 31 2020 22:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34782 * 125.87505 * 2 1 4 4 H 0.96997 * 125.36332 * 359.97438 * 3 2 1 5 5 C 1.37312 * 109.27105 * 179.97438 * 3 2 1 6 6 C 1.47998 * 125.76279 * 180.02562 * 5 3 2 7 7 N 1.34182 * 126.69384 * 359.69818 * 6 5 3 8 8 N 1.28986 * 107.25366 * 179.83102 * 7 6 5 9 9 N 1.28723 * 108.98422 * 0.43091 * 8 7 6 10 10 H 0.96997 * 125.32387 * 179.75020 * 9 8 7 11 11 N 1.28876 * 109.35740 * 359.72382 * 9 8 7 12 12 C 1.35701 * 108.47791 * 359.72518 * 5 3 2 13 13 C 1.37855 * 125.87309 * 179.97438 * 2 1 3 14 14 C 1.47272 * 126.52990 * 0.02562 * 13 2 1 15 15 O 1.21627 * 120.00043 * 359.97438 * 14 13 2 16 16 N 1.34773 * 119.99831 * 179.97438 * 14 13 2 17 17 C 1.39390 * 120.00244 * 174.91514 * 16 14 13 18 18 C 1.38653 * 119.65281 * 174.65069 * 17 16 14 19 19 C 1.40823 * 118.67563 * 179.97438 * 18 17 16 20 20 C 1.41537 * 121.00172 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00306 * 206.23707 * 20 19 18 22 22 C 1.40037 * 119.99850 * 26.24313 * 20 19 18 23 23 N 1.30747 * 119.99801 * 9.82481 * 22 20 19 24 24 Si 1.86794 * 120.00144 * 189.83742 * 22 20 19 25 25 H 1.48502 * 109.47731 * 89.99375 * 24 22 20 26 26 H 1.48500 * 109.47277 * 209.99753 * 24 22 20 27 27 H 1.48502 * 109.47138 * 329.99307 * 24 22 20 28 28 C 1.41167 * 118.00428 * 359.97438 * 19 18 17 29 29 C 1.36603 * 119.12958 * 0.02562 * 28 19 18 30 30 N 1.32059 * 121.25962 * 359.97438 * 29 28 19 31 31 H 1.08999 * 109.47752 * 270.00778 * 1 2 3 32 32 H 1.09008 * 109.47301 * 30.00888 * 1 2 3 33 33 H 1.08997 * 109.47391 * 150.00175 * 1 2 3 34 34 H 1.08004 * 126.46912 * 180.26804 * 12 5 3 35 35 H 0.96997 * 120.00360 * 354.91476 * 16 14 13 36 36 H 1.08002 * 120.66637 * 0.02562 * 18 17 16 37 37 H 0.96998 * 119.99732 * 180.02562 * 23 22 20 38 38 H 1.07999 * 120.43916 * 180.02562 * 28 19 18 39 39 H 1.08001 * 119.36782 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2968 1.0921 0.0000 4 1 1.9849 2.0106 -0.0004 5 6 3.6127 0.6998 0.0006 6 6 4.7847 1.6034 0.0013 7 7 4.7628 2.9451 -0.0042 8 7 5.9881 3.3478 0.0024 9 7 6.7660 2.3222 0.0025 10 1 7.7354 2.3536 0.0033 11 7 6.0553 1.2471 0.0019 12 6 3.6571 -0.6565 0.0071 13 6 2.3148 -1.1171 0.0005 14 6 1.8696 -2.5209 0.0006 15 8 0.6817 -2.7821 0.0007 16 7 2.7784 -3.5160 0.0006 17 6 2.3606 -4.8415 0.1077 18 6 3.2895 -5.8648 -0.0047 19 6 2.8450 -7.1963 0.1073 20 6 3.7506 -8.2787 -0.0002 21 1 3.4006 -9.2446 -0.3333 22 6 5.1004 -8.0972 0.3257 23 7 5.4895 -6.9934 0.9084 24 14 6.3449 -9.4320 -0.0725 25 1 6.8989 -9.2032 -1.4312 26 1 7.4458 -9.3955 0.9235 27 1 5.6796 -10.7589 -0.0263 28 6 1.4689 -7.4192 0.3299 29 6 0.6287 -6.3465 0.4269 30 7 1.0801 -5.1103 0.3168 31 1 -0.3634 0.0001 1.0276 32 1 -0.3634 0.8900 -0.5140 33 1 -0.3634 -0.8900 -0.5138 34 1 4.5461 -1.2697 0.0133 35 1 3.7233 -3.3100 -0.0739 36 1 4.3333 -5.6451 -0.1740 37 1 6.4245 -6.8676 1.1337 38 1 1.0854 -8.4245 0.4224 39 1 -0.4247 -6.5125 0.5976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605452441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:04 Heat of formation + Delta-G solvation = 170.058808 kcal Electronic energy + Delta-G solvation = -27366.965270 eV Core-core repulsion = 23313.491115 eV Total energy + Delta-G solvation = -4053.474155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.72984 -41.53029 -39.19751 -37.53423 -34.66332 -34.28279 -33.83876 -33.62197 -31.56476 -31.24321 -30.43470 -28.55673 -27.01574 -25.95184 -24.98956 -23.91100 -22.74772 -21.86839 -20.86628 -20.51838 -19.80059 -18.97294 -17.60490 -17.46368 -17.44377 -16.26329 -15.47998 -15.20007 -15.15350 -14.71857 -14.30880 -14.14946 -14.02875 -13.84030 -13.57762 -13.33070 -12.85718 -12.77492 -12.64346 -12.57330 -12.53034 -12.21169 -11.72487 -11.68774 -11.45184 -11.38641 -11.18662 -11.15116 -10.87211 -10.22549 -10.07913 -9.67288 -9.36154 -9.28482 -9.11671 -8.11156 -7.92095 -7.66940 -6.96996 -6.69676 -4.58480 0.69679 1.15410 1.85763 1.87704 2.64733 2.73028 2.81197 2.90644 3.04135 3.07518 3.29515 3.45425 3.85617 3.88535 4.05068 4.07659 4.75610 4.77682 4.93045 5.04111 5.10827 5.18780 5.44353 5.62773 5.74187 5.74920 5.83847 6.06393 6.08494 6.20542 6.51617 6.61079 6.68416 6.77307 6.87672 7.02802 7.16796 7.19008 7.46131 7.54453 7.82833 7.86757 8.04138 8.30123 8.49363 8.76474 8.80210 9.03098 9.75824 10.13782 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.002881 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.250747 B = 9718.151277 C =12113.549264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.129 3.871 3 N -0.525 5.525 4 H 0.423 0.577 5 C 0.055 3.945 6 C 0.253 3.747 7 N -0.283 5.283 8 N -0.048 5.048 9 N -0.225 5.225 10 H 0.477 0.523 11 N -0.282 5.282 12 C -0.088 4.088 13 C -0.220 4.220 14 C 0.576 3.424 15 O -0.488 6.488 16 N -0.652 5.652 17 C 0.341 3.659 18 C -0.241 4.241 19 C 0.142 3.858 20 C -0.454 4.454 21 H 0.081 0.919 22 C 0.075 3.925 23 N -0.794 5.794 24 Si 0.914 3.086 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.262 1.262 28 C -0.282 4.282 29 C 0.118 3.882 30 N -0.553 5.553 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.155 0.845 35 H 0.407 0.593 36 H 0.133 0.867 37 H 0.280 0.720 38 H 0.101 0.899 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 17.517 -1.675 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.007 3.993 3 N -0.121 5.121 4 H 0.262 0.738 5 C -0.057 4.057 6 C -0.026 4.026 7 N -0.157 5.157 8 N -0.043 5.043 9 N -0.072 5.072 10 H 0.332 0.668 11 N -0.134 5.134 12 C -0.116 4.116 13 C -0.230 4.230 14 C 0.362 3.638 15 O -0.361 6.361 16 N -0.297 5.297 17 C 0.116 3.884 18 C -0.266 4.266 19 C 0.133 3.867 20 C -0.486 4.486 21 H 0.099 0.901 22 C -0.143 4.143 23 N -0.421 5.421 24 Si 0.739 3.261 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.306 4.306 29 C -0.036 4.036 30 N -0.272 5.272 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.173 0.827 35 H 0.243 0.757 36 H 0.151 0.849 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.293 18.980 -1.493 19.176 hybrid contribution 2.321 -1.061 -0.110 2.554 sum 4.614 17.919 -1.604 18.573 Atomic orbital electron populations 1.20655 0.86007 1.04641 1.04006 1.20806 0.93923 0.84609 0.99936 1.41436 1.04459 1.09108 1.57099 0.73816 1.16186 0.80141 0.90406 1.18922 1.22457 0.90148 0.88770 1.01240 1.76111 1.11106 1.09361 1.19149 1.78841 0.95729 1.15120 1.14638 1.47736 1.12885 1.00549 1.45996 0.66812 1.75050 1.03480 1.12583 1.22305 1.21146 0.97319 0.91573 1.01563 1.19558 0.92526 0.93182 1.17688 1.17315 0.86033 0.83236 0.77214 1.90808 1.15519 1.83515 1.46212 1.43194 1.10051 1.04309 1.72149 1.18195 0.90578 0.82838 0.96819 1.21687 0.99674 0.91702 1.13566 1.17594 0.91141 0.92310 0.85649 1.19578 0.92160 0.97263 1.39584 0.90125 1.25939 0.99448 0.96549 0.92336 1.69748 1.18098 1.25286 1.28939 0.86214 0.79509 0.81375 0.79038 1.19285 1.20260 1.18594 1.21686 0.95510 0.98326 1.15043 1.21471 0.98045 0.87614 0.96509 1.67202 1.13950 1.22660 1.23395 0.89875 0.91653 0.87240 0.82722 0.75736 0.84940 0.90862 0.88108 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 9.88 36.00 0.36 -0.67 16 2 C 0.13 1.61 7.21 -81.44 -0.59 1.02 16 3 N -0.53 -5.49 6.01 -5.50 -0.03 -5.53 16 4 H 0.42 3.27 8.96 -40.82 -0.37 2.91 16 5 C 0.06 0.66 7.08 -82.32 -0.58 0.08 16 6 C 0.25 2.94 8.21 -156.26 -1.28 1.66 16 7 N -0.28 -3.23 12.54 32.09 0.40 -2.83 16 8 N -0.05 -0.46 13.47 60.35 0.81 0.35 16 9 N -0.22 -1.66 7.90 60.35 0.48 -1.18 16 10 H 0.48 1.21 8.96 -340.34 -3.05 -1.85 16 11 N -0.28 -2.93 12.38 32.11 0.40 -2.53 16 12 C -0.09 -1.16 10.24 -39.09 -0.40 -1.56 16 13 C -0.22 -3.33 6.14 -104.96 -0.64 -3.97 16 14 C 0.58 11.16 7.76 -12.59 -0.10 11.06 16 15 O -0.49 -10.85 13.09 5.25 0.07 -10.79 16 16 N -0.65 -13.16 5.38 -12.50 -0.07 -13.22 16 17 C 0.34 8.32 7.41 -154.73 -1.15 7.17 16 18 C -0.24 -6.13 8.62 -38.45 -0.33 -6.46 16 19 C 0.14 3.73 5.60 -106.55 -0.60 3.13 16 20 C -0.45 -11.68 9.14 -37.65 -0.34 -12.03 16 21 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 22 C 0.08 1.81 5.31 -17.34 -0.09 1.72 16 23 N -0.79 -19.52 10.70 55.55 0.59 -18.92 16 24 Si 0.91 17.99 29.57 -169.99 -5.03 12.97 16 25 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 27 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 28 C -0.28 -6.92 9.85 -39.06 -0.38 -7.31 16 29 C 0.12 2.82 11.10 -18.04 -0.20 2.62 16 30 N -0.55 -14.07 7.89 -12.77 -0.10 -14.17 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.11 1.46 6.46 -51.93 -0.34 1.12 16 34 H 0.16 1.84 7.56 -52.48 -0.40 1.44 16 35 H 0.41 6.98 7.70 -40.82 -0.31 6.66 16 36 H 0.13 3.35 6.11 -52.49 -0.32 3.03 16 37 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 38 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 39 H 0.12 2.54 8.06 -52.49 -0.42 2.11 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -33.78 348.11 -9.59 -43.37 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.02 Total: 10.77 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -6.34 Total: -3.53 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 2.48 Total: -58.04 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.78 -9.59 -43.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605452441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.427 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds