Wall clock time and date at job start Tue Mar 31 2020 22:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34782 * 125.87505 * 2 1 4 4 H 0.96997 * 125.36332 * 359.97438 * 3 2 1 5 5 C 1.37312 * 109.27105 * 179.97438 * 3 2 1 6 6 C 1.47998 * 125.76279 * 180.02562 * 5 3 2 7 7 N 1.34182 * 126.69384 * 359.69818 * 6 5 3 8 8 N 1.28986 * 107.25366 * 179.83102 * 7 6 5 9 9 N 1.28723 * 108.98422 * 0.43091 * 8 7 6 10 10 H 0.96997 * 125.32387 * 179.75020 * 9 8 7 11 11 N 1.28876 * 109.35740 * 359.72382 * 9 8 7 12 12 C 1.35701 * 108.47791 * 359.72518 * 5 3 2 13 13 C 1.37855 * 125.87309 * 179.97438 * 2 1 3 14 14 C 1.47272 * 126.52990 * 0.02562 * 13 2 1 15 15 O 1.21627 * 120.00043 * 359.97438 * 14 13 2 16 16 N 1.34773 * 119.99831 * 179.97438 * 14 13 2 17 17 C 1.39390 * 120.00244 * 174.91514 * 16 14 13 18 18 C 1.38653 * 119.65281 * 174.65069 * 17 16 14 19 19 C 1.40823 * 118.67563 * 179.97438 * 18 17 16 20 20 C 1.41537 * 121.00172 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00306 * 206.23707 * 20 19 18 22 22 C 1.40037 * 119.99850 * 26.24313 * 20 19 18 23 23 N 1.30747 * 119.99801 * 9.82481 * 22 20 19 24 24 Si 1.86794 * 120.00144 * 189.83742 * 22 20 19 25 25 H 1.48502 * 109.47731 * 89.99375 * 24 22 20 26 26 H 1.48500 * 109.47277 * 209.99753 * 24 22 20 27 27 H 1.48502 * 109.47138 * 329.99307 * 24 22 20 28 28 C 1.41167 * 118.00428 * 359.97438 * 19 18 17 29 29 C 1.36603 * 119.12958 * 0.02562 * 28 19 18 30 30 N 1.32059 * 121.25962 * 359.97438 * 29 28 19 31 31 H 1.08999 * 109.47752 * 270.00778 * 1 2 3 32 32 H 1.09008 * 109.47301 * 30.00888 * 1 2 3 33 33 H 1.08997 * 109.47391 * 150.00175 * 1 2 3 34 34 H 1.08004 * 126.46912 * 180.26804 * 12 5 3 35 35 H 0.96997 * 120.00360 * 354.91476 * 16 14 13 36 36 H 1.08002 * 120.66637 * 0.02562 * 18 17 16 37 37 H 0.96998 * 119.99732 * 180.02562 * 23 22 20 38 38 H 1.07999 * 120.43916 * 180.02562 * 28 19 18 39 39 H 1.08001 * 119.36782 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2968 1.0921 0.0000 4 1 1.9849 2.0106 -0.0004 5 6 3.6127 0.6998 0.0006 6 6 4.7847 1.6034 0.0013 7 7 4.7628 2.9451 -0.0042 8 7 5.9881 3.3478 0.0024 9 7 6.7660 2.3222 0.0025 10 1 7.7354 2.3536 0.0033 11 7 6.0553 1.2471 0.0019 12 6 3.6571 -0.6565 0.0071 13 6 2.3148 -1.1171 0.0005 14 6 1.8696 -2.5209 0.0006 15 8 0.6817 -2.7821 0.0007 16 7 2.7784 -3.5160 0.0006 17 6 2.3606 -4.8415 0.1077 18 6 3.2895 -5.8648 -0.0047 19 6 2.8450 -7.1963 0.1073 20 6 3.7506 -8.2787 -0.0002 21 1 3.4006 -9.2446 -0.3333 22 6 5.1004 -8.0972 0.3257 23 7 5.4895 -6.9934 0.9084 24 14 6.3449 -9.4320 -0.0725 25 1 6.8989 -9.2032 -1.4312 26 1 7.4458 -9.3955 0.9235 27 1 5.6796 -10.7589 -0.0263 28 6 1.4689 -7.4192 0.3299 29 6 0.6287 -6.3465 0.4269 30 7 1.0801 -5.1103 0.3168 31 1 -0.3634 0.0001 1.0276 32 1 -0.3634 0.8900 -0.5140 33 1 -0.3634 -0.8900 -0.5138 34 1 4.5461 -1.2697 0.0133 35 1 3.7233 -3.3100 -0.0739 36 1 4.3333 -5.6451 -0.1740 37 1 6.4245 -6.8676 1.1337 38 1 1.0854 -8.4245 0.4224 39 1 -0.4247 -6.5125 0.5976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605452441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:03 Heat of formation + Delta-G solvation = 146.670552 kcal Electronic energy + Delta-G solvation = -27367.979461 eV Core-core repulsion = 23313.491115 eV Total energy + Delta-G solvation = -4054.488346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.51244 -42.56329 -40.88737 -39.24428 -36.06649 -35.46993 -35.41710 -34.61311 -32.72830 -32.31719 -32.15267 -30.28594 -27.99661 -27.83977 -25.84814 -25.00549 -23.96640 -23.74099 -22.26067 -21.69425 -20.70571 -20.34373 -19.36223 -18.41796 -18.21810 -17.87191 -17.06280 -16.87785 -16.32020 -15.99889 -15.72510 -15.65339 -15.38030 -15.27592 -14.84285 -14.50473 -14.39551 -14.30526 -14.04500 -13.75668 -13.59040 -13.36487 -13.11957 -12.85061 -12.67300 -12.64378 -12.47002 -12.26130 -12.02993 -11.96763 -11.85281 -11.42433 -11.13439 -10.91197 -10.17573 -9.86679 -9.54604 -9.12178 -8.78831 -8.52648 -6.53511 -0.09094 0.29193 0.55848 1.05278 1.08980 1.23386 1.43487 1.56018 1.60835 1.75575 1.86591 2.23211 2.30340 2.58779 2.67844 2.91870 3.21397 3.79450 3.82840 3.86835 4.05313 4.09500 4.28973 4.36477 4.52545 4.75732 4.78192 4.80394 4.91301 4.93840 5.01201 5.15937 5.27530 5.29713 5.47245 5.55585 5.56643 5.68803 5.73301 5.98568 6.21929 6.33722 6.55613 6.68686 6.85250 6.88687 7.03690 7.43712 7.90447 8.33464 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.002881 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.250747 B = 9718.151277 C =12113.549264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.145 3.855 3 N -0.506 5.506 4 H 0.439 0.561 5 C 0.062 3.938 6 C 0.241 3.759 7 N -0.297 5.297 8 N -0.049 5.049 9 N -0.197 5.197 10 H 0.496 0.504 11 N -0.288 5.288 12 C -0.094 4.094 13 C -0.251 4.251 14 C 0.574 3.426 15 O -0.522 6.522 16 N -0.649 5.649 17 C 0.339 3.661 18 C -0.259 4.259 19 C 0.112 3.888 20 C -0.484 4.484 21 H 0.082 0.918 22 C 0.036 3.964 23 N -0.817 5.817 24 Si 0.990 3.010 25 H -0.261 1.261 26 H -0.267 1.267 27 H -0.260 1.260 28 C -0.296 4.296 29 C 0.113 3.887 30 N -0.575 5.575 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.419 0.581 36 H 0.128 0.872 37 H 0.291 0.709 38 H 0.115 0.885 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.589 18.858 -1.766 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.021 3.979 3 N -0.103 5.103 4 H 0.281 0.719 5 C -0.050 4.050 6 C -0.039 4.039 7 N -0.170 5.170 8 N -0.044 5.044 9 N -0.048 5.048 10 H 0.356 0.644 11 N -0.141 5.141 12 C -0.122 4.122 13 C -0.260 4.260 14 C 0.363 3.637 15 O -0.397 6.397 16 N -0.295 5.295 17 C 0.112 3.888 18 C -0.285 4.285 19 C 0.104 3.896 20 C -0.515 4.515 21 H 0.101 0.899 22 C -0.180 4.180 23 N -0.443 5.443 24 Si 0.810 3.190 25 H -0.186 1.186 26 H -0.192 1.192 27 H -0.184 1.184 28 C -0.320 4.320 29 C -0.040 4.040 30 N -0.295 5.295 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.179 0.821 35 H 0.256 0.744 36 H 0.145 0.855 37 H 0.101 0.899 38 H 0.133 0.867 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.659 20.388 -1.583 20.775 hybrid contribution 1.970 -1.348 -0.061 2.388 sum 5.628 19.040 -1.644 19.923 Atomic orbital electron populations 1.20670 0.84706 1.05109 1.04599 1.20947 0.94631 0.84311 0.98020 1.41358 1.03749 1.09492 1.55703 0.71911 1.16187 0.80853 0.90098 1.17892 1.22373 0.90264 0.88912 1.02345 1.76099 1.11922 1.09162 1.19775 1.78797 0.95540 1.15372 1.14723 1.47794 1.13742 0.99441 1.43853 0.64434 1.75017 1.03384 1.13536 1.22158 1.21182 0.96758 0.92302 1.01938 1.19215 0.94116 0.91390 1.21301 1.17878 0.85432 0.84516 0.75879 1.90777 1.16820 1.84317 1.47819 1.43228 1.11037 1.03180 1.72072 1.18432 0.90239 0.84400 0.95696 1.21660 0.99602 0.92026 1.15208 1.18035 0.92292 0.93091 0.86198 1.19862 0.93465 0.97320 1.40807 0.89941 1.26810 1.00722 0.98979 0.91486 1.69792 1.19170 1.26789 1.28531 0.85084 0.76743 0.78095 0.79066 1.18576 1.19198 1.18356 1.21871 0.95192 0.99277 1.15624 1.21948 0.99393 0.87214 0.95481 1.67332 1.14428 1.23317 1.24419 0.89126 0.87939 0.89946 0.82135 0.74406 0.85465 0.89853 0.86689 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.88 9.88 71.24 0.70 -1.18 16 2 C 0.15 3.44 7.21 42.01 0.30 3.75 16 3 N -0.51 -9.59 6.01 -171.32 -1.03 -10.62 16 4 H 0.44 5.61 8.96 -92.71 -0.83 4.78 16 5 C 0.06 1.39 7.08 40.29 0.29 1.68 16 6 C 0.24 5.15 8.21 137.15 1.13 6.28 16 7 N -0.30 -6.15 12.54 -52.38 -0.66 -6.80 16 8 N -0.05 -0.85 13.47 37.02 0.50 -0.35 16 9 N -0.20 -2.45 7.90 37.02 0.29 -2.16 16 10 H 0.50 1.25 8.96 -347.51 -3.11 -1.87 16 11 N -0.29 -5.42 12.38 -52.33 -0.65 -6.07 16 12 C -0.09 -2.43 10.24 22.59 0.23 -2.19 16 13 C -0.25 -7.57 6.14 -20.08 -0.12 -7.70 16 14 C 0.57 22.81 7.76 86.62 0.67 23.48 16 15 O -0.52 -23.93 13.09 -4.12 -0.05 -23.98 16 16 N -0.65 -27.04 5.38 -311.70 -1.68 -28.72 16 17 C 0.34 17.06 7.41 132.78 0.98 18.05 16 18 C -0.26 -13.66 8.62 23.00 0.20 -13.47 16 19 C 0.11 6.08 5.60 -21.11 -0.12 5.96 16 20 C -0.48 -25.31 9.14 23.52 0.21 -25.10 16 21 H 0.08 4.13 7.87 -2.91 -0.02 4.11 16 22 C 0.04 1.74 5.31 85.29 0.45 2.19 16 23 N -0.82 -40.38 10.70 21.84 0.23 -40.15 16 24 Si 0.99 36.35 29.57 68.60 2.03 38.37 16 25 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 26 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 27 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 28 C -0.30 -14.86 9.85 22.61 0.22 -14.64 16 29 C 0.11 5.51 11.10 84.28 0.94 6.45 16 30 N -0.57 -30.00 7.89 -194.30 -1.53 -31.53 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.08 2.20 6.46 -2.39 -0.02 2.18 16 34 H 0.16 3.79 7.56 -2.91 -0.02 3.77 16 35 H 0.42 14.86 7.70 -92.71 -0.71 14.14 16 36 H 0.13 6.69 6.11 -2.91 -0.02 6.67 16 37 H 0.29 12.84 8.29 -92.71 -0.77 12.07 16 38 H 0.12 5.26 8.06 -2.91 -0.02 5.24 16 39 H 0.15 6.22 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -74.12 348.11 0.07 -74.05 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -3.47 Total: 34.37 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 6.09 Total: 3.57 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -4.52 Total: -126.39 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.37 kcal Total: -74.12 0.07 -74.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605452441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.721 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds