Wall clock time and date at job start Tue Mar 31 2020 22:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38172 * 119.91089 * 2 1 4 4 C 1.38010 * 120.26659 * 179.70013 * 3 2 1 5 5 C 1.39664 * 120.09283 * 0.59981 * 4 3 2 6 6 C 1.47833 * 120.09063 * 179.69669 * 5 4 3 7 7 O 1.21583 * 120.00342 * 179.72545 * 6 5 4 8 8 N 1.34780 * 120.00372 * 0.02562 * 6 5 4 9 9 C 1.40522 * 120.00488 * 179.72439 * 8 6 5 10 10 C 1.40666 * 126.08082 * 359.68558 * 9 8 6 11 11 N 1.30912 * 108.38269 * 179.87656 * 10 9 8 12 12 N 1.40071 * 108.41223 * 0.38433 * 11 10 9 13 13 C 1.37317 * 126.06878 * 179.71516 * 12 11 10 14 14 H 1.07997 * 120.00048 * 174.17209 * 13 12 11 15 15 C 1.38990 * 119.99660 * 354.18224 * 13 12 11 16 16 N 1.31291 * 120.00269 * 5.93775 * 15 13 12 17 17 Si 1.86794 * 119.99880 * 185.93524 * 15 13 12 18 18 H 1.48510 * 109.47072 * 94.98026 * 17 15 13 19 19 H 1.48493 * 109.47707 * 214.97906 * 17 15 13 20 20 H 1.48502 * 109.47418 * 334.98093 * 17 15 13 21 21 C 1.35695 * 126.08518 * 179.97438 * 9 8 6 22 22 C 1.39385 * 119.81856 * 359.42203 * 5 4 3 23 23 C 1.39054 * 119.73327 * 0.28120 * 22 5 4 24 24 C 1.48482 * 120.04537 * 180.02562 * 23 22 5 25 25 N 1.34045 * 126.67160 * 179.68464 * 24 23 22 26 26 N 1.28981 * 107.26664 * 179.83191 * 25 24 23 27 27 N 1.28733 * 108.94238 * 0.43380 * 26 25 24 28 28 H 0.97006 * 125.34362 * 179.75864 * 27 26 25 29 29 N 1.28872 * 109.31527 * 359.72401 * 27 26 25 30 30 H 1.09000 * 109.47194 * 269.97590 * 1 2 3 31 31 H 1.09002 * 109.47400 * 29.97815 * 1 2 3 32 32 H 1.09002 * 109.47105 * 149.97716 * 1 2 3 33 33 H 1.07996 * 119.86506 * 0.02562 * 3 2 1 34 34 H 1.08009 * 119.95476 * 180.32232 * 4 3 2 35 35 H 0.97001 * 119.99581 * 359.71912 * 8 6 5 36 36 H 1.07990 * 125.81157 * 0.02562 * 10 9 8 37 37 H 0.96999 * 120.00219 * 180.02562 * 16 15 13 38 38 H 1.08000 * 126.25048 * 359.93409 * 21 9 8 39 39 H 1.07999 * 120.12999 * 180.25250 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1977 0.0000 4 6 3.5760 1.2063 0.0062 5 6 4.2838 0.0023 -0.0001 6 6 5.7621 0.0116 -0.0001 7 8 6.3767 -1.0375 -0.0006 8 7 6.4288 1.1829 0.0064 9 6 7.8339 1.1918 0.0121 10 6 8.6695 0.0602 0.0181 11 7 9.9141 0.4659 0.0197 12 7 9.9228 1.8666 0.0237 13 6 11.0377 2.6682 0.0318 14 1 10.9335 3.7391 -0.0607 15 6 12.3003 2.1011 0.1589 16 7 12.4370 0.7954 0.1539 17 14 13.8026 3.1969 0.3368 18 1 14.1228 3.3679 1.7768 19 1 14.9571 2.5705 -0.3559 20 1 13.5223 4.5235 -0.2689 21 6 8.6262 2.2934 0.0185 22 6 3.5926 -1.2081 -0.0005 23 6 2.2021 -1.2082 -0.0005 24 6 1.4587 -2.4935 -0.0004 25 7 0.1272 -2.6483 0.0055 26 7 -0.1109 -3.9159 -0.0003 27 7 1.0086 -4.5514 -0.0003 28 1 1.1060 -5.5166 -0.0007 29 7 1.9797 -3.7042 -0.0003 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6523 2.1308 0.0004 34 1 4.1095 2.1454 0.0115 35 1 5.9385 2.0199 0.0070 36 1 8.3403 -0.9684 0.0187 37 1 13.3182 0.3997 0.2429 38 1 8.2921 3.3204 0.0190 39 1 4.1349 -2.1421 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605823466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:28 Heat of formation + Delta-G solvation = 209.010176 kcal Electronic energy + Delta-G solvation = -27055.227367 eV Core-core repulsion = 23003.442270 eV Total energy + Delta-G solvation = -4051.785097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.71637 -40.30898 -39.46780 -38.15133 -34.81915 -34.33422 -33.85872 -33.20197 -32.73568 -30.79179 -30.23796 -28.31606 -27.17504 -25.22367 -24.84084 -24.27815 -22.68210 -21.98205 -20.97650 -20.46419 -19.46767 -19.12012 -17.79811 -17.40505 -17.23615 -15.82130 -15.66593 -15.48425 -15.23204 -14.92313 -14.68391 -14.27108 -14.08468 -13.92526 -13.75347 -13.43615 -13.16402 -12.89238 -12.87487 -12.25040 -12.10307 -11.85714 -11.68407 -11.63716 -11.56406 -11.41187 -11.28990 -11.16476 -10.93629 -10.86897 -10.53018 -10.17565 -9.28945 -9.17451 -9.04402 -8.81915 -8.80744 -8.05809 -6.70046 -6.56631 -4.22948 0.41367 0.86038 0.96383 1.98458 2.03152 2.88716 3.04152 3.05100 3.10408 3.33505 3.56286 3.57458 3.85434 3.89734 3.97456 4.46738 4.56647 4.61665 4.76190 4.78650 4.99010 5.01023 5.11433 5.17246 5.24270 5.41948 5.51643 5.59487 5.75315 6.02943 6.06461 6.12728 6.14643 6.24728 6.32037 6.45773 6.60978 6.90185 6.95771 7.11390 7.23350 7.85801 7.88624 8.16109 8.27036 8.62174 8.83063 9.37595 9.66596 10.39600 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028571 B = 0.002036 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.772834 B =13749.043835 C =14708.107474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.023 4.023 3 C -0.130 4.130 4 C -0.065 4.065 5 C -0.126 4.126 6 C 0.540 3.460 7 O -0.531 6.531 8 N -0.615 5.615 9 C -0.060 4.060 10 C -0.031 4.031 11 N -0.261 5.261 12 N -0.142 5.142 13 C -0.323 4.323 14 H 0.117 0.883 15 C 0.046 3.954 16 N -0.769 5.769 17 Si 0.935 3.065 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.264 1.264 21 C -0.082 4.082 22 C -0.018 4.018 23 C -0.036 4.036 24 C 0.226 3.774 25 N -0.268 5.268 26 N -0.055 5.055 27 N -0.225 5.225 28 H 0.476 0.524 29 N -0.288 5.288 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.396 0.604 36 H 0.177 0.823 37 H 0.275 0.725 38 H 0.146 0.854 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.844 -2.124 -0.118 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.026 4.026 3 C -0.148 4.148 4 C -0.084 4.084 5 C -0.130 4.130 6 C 0.327 3.673 7 O -0.409 6.409 8 N -0.257 5.257 9 C -0.166 4.166 10 C -0.206 4.206 11 N -0.092 5.092 12 N 0.090 4.910 13 C -0.455 4.455 14 H 0.134 0.866 15 C -0.171 4.171 16 N -0.395 5.395 17 Si 0.758 3.242 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.188 1.188 21 C -0.233 4.233 22 C -0.039 4.039 23 C -0.039 4.039 24 C -0.053 4.053 25 N -0.141 5.141 26 N -0.050 5.050 27 N -0.071 5.071 28 H 0.330 0.670 29 N -0.139 5.139 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.230 0.770 36 H 0.194 0.806 37 H 0.085 0.915 38 H 0.164 0.836 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -21.525 -3.814 -0.108 21.860 hybrid contribution 0.013 0.893 0.106 0.899 sum -21.512 -2.921 -0.001 21.710 Atomic orbital electron populations 1.21257 0.89823 1.04508 1.03411 1.20104 0.96933 0.91352 0.94176 1.20911 0.93702 0.97533 1.02698 1.21528 0.94434 0.97477 0.94999 1.19916 0.93615 0.93630 1.05817 1.17929 0.86236 0.84027 0.79129 1.90681 1.68423 1.31516 1.50253 1.42383 1.05021 1.07664 1.70680 1.17245 0.81135 0.94292 1.23918 1.24139 0.89891 0.98912 1.07683 1.78259 1.17213 0.88054 1.25681 1.44557 1.02954 1.04400 1.39059 1.19879 0.82440 0.90384 1.52838 0.86577 1.25650 0.99692 0.96267 0.95507 1.70221 1.24569 1.09712 1.35017 0.85812 0.79737 0.79639 0.78964 1.19640 1.20115 1.18774 1.21258 0.85234 0.96947 1.19910 1.21252 0.91699 0.98932 0.92033 1.17010 0.91604 0.86730 1.08594 1.23591 0.88158 0.92281 1.01310 1.76094 1.13588 1.05896 1.18550 1.78905 1.11167 1.00298 1.14628 1.47733 1.01067 1.12509 1.45832 0.66982 1.75042 1.17460 0.99775 1.21604 0.90518 0.91412 0.88148 0.84574 0.84927 0.76978 0.80639 0.91454 0.83634 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.18 36.00 0.33 -0.74 16 2 C -0.02 -0.23 5.91 -104.22 -0.62 -0.84 16 3 C -0.13 -1.14 9.67 -39.69 -0.38 -1.52 16 4 C -0.06 -0.66 9.54 -39.13 -0.37 -1.03 16 5 C -0.13 -1.73 5.87 -105.01 -0.62 -2.34 16 6 C 0.54 9.67 7.74 -12.33 -0.10 9.58 16 7 O -0.53 -11.54 13.49 5.29 0.07 -11.47 16 8 N -0.62 -10.89 5.41 -10.85 -0.06 -10.95 16 9 C -0.06 -1.38 6.90 -83.86 -0.58 -1.96 16 10 C -0.03 -0.81 10.85 -17.03 -0.18 -0.99 16 11 N -0.26 -7.61 10.42 30.80 0.32 -7.29 16 12 N -0.14 -3.89 3.74 -11.41 -0.04 -3.93 16 13 C -0.32 -8.51 10.24 -14.82 -0.15 -8.66 16 14 H 0.12 2.72 7.84 -52.49 -0.41 2.31 16 15 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 16 N -0.77 -21.48 11.84 55.49 0.66 -20.82 16 17 Si 0.93 18.86 29.55 -169.99 -5.02 13.83 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 21 C -0.08 -1.92 11.49 -16.39 -0.19 -2.11 16 22 C -0.02 -0.24 9.24 -38.85 -0.36 -0.60 16 23 C -0.04 -0.42 5.87 -104.94 -0.62 -1.04 16 24 C 0.23 2.63 7.78 -156.31 -1.22 1.41 16 25 N -0.27 -2.93 9.06 32.16 0.29 -2.64 16 26 N -0.06 -0.52 13.47 60.35 0.81 0.29 16 27 N -0.23 -1.71 7.90 60.35 0.48 -1.23 16 28 H 0.48 1.33 8.96 -340.36 -3.05 -1.72 16 29 N -0.29 -3.11 12.08 32.17 0.39 -2.72 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.10 0.92 5.13 -51.93 -0.27 0.66 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 1.04 6.39 -52.48 -0.34 0.70 16 35 H 0.40 5.27 6.85 -40.82 -0.28 4.99 16 36 H 0.18 4.61 5.91 -52.49 -0.31 4.30 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.15 2.79 8.06 -52.49 -0.42 2.36 16 39 H 0.15 2.13 7.47 -52.49 -0.39 1.74 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -35.82 343.26 -7.95 -43.77 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.87 Total: 7.76 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -5.15 Total: -9.77 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 2.85 Total: -49.29 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.82 -7.95 -43.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605823466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.778 kcal (2) G-P(sol) polarization free energy of solvation -35.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 216.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 209.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds