Wall clock time and date at job start Tue Mar 31 2020 22:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38172 * 119.91089 * 2 1 4 4 C 1.38010 * 120.26659 * 179.70013 * 3 2 1 5 5 C 1.39664 * 120.09283 * 0.59981 * 4 3 2 6 6 C 1.47833 * 120.09063 * 179.69669 * 5 4 3 7 7 O 1.21583 * 120.00342 * 179.72545 * 6 5 4 8 8 N 1.34780 * 120.00372 * 0.02562 * 6 5 4 9 9 C 1.40522 * 120.00488 * 179.72439 * 8 6 5 10 10 C 1.40666 * 126.08082 * 359.68558 * 9 8 6 11 11 N 1.30912 * 108.38269 * 179.87656 * 10 9 8 12 12 N 1.40071 * 108.41223 * 0.38433 * 11 10 9 13 13 C 1.37317 * 126.06878 * 179.71516 * 12 11 10 14 14 H 1.07997 * 120.00048 * 174.17209 * 13 12 11 15 15 C 1.38990 * 119.99660 * 354.18224 * 13 12 11 16 16 N 1.31291 * 120.00269 * 5.93775 * 15 13 12 17 17 Si 1.86794 * 119.99880 * 185.93524 * 15 13 12 18 18 H 1.48510 * 109.47072 * 94.98026 * 17 15 13 19 19 H 1.48493 * 109.47707 * 214.97906 * 17 15 13 20 20 H 1.48502 * 109.47418 * 334.98093 * 17 15 13 21 21 C 1.35695 * 126.08518 * 179.97438 * 9 8 6 22 22 C 1.39385 * 119.81856 * 359.42203 * 5 4 3 23 23 C 1.39054 * 119.73327 * 0.28120 * 22 5 4 24 24 C 1.48482 * 120.04537 * 180.02562 * 23 22 5 25 25 N 1.34045 * 126.67160 * 179.68464 * 24 23 22 26 26 N 1.28981 * 107.26664 * 179.83191 * 25 24 23 27 27 N 1.28733 * 108.94238 * 0.43380 * 26 25 24 28 28 H 0.97006 * 125.34362 * 179.75864 * 27 26 25 29 29 N 1.28872 * 109.31527 * 359.72401 * 27 26 25 30 30 H 1.09000 * 109.47194 * 269.97590 * 1 2 3 31 31 H 1.09002 * 109.47400 * 29.97815 * 1 2 3 32 32 H 1.09002 * 109.47105 * 149.97716 * 1 2 3 33 33 H 1.07996 * 119.86506 * 0.02562 * 3 2 1 34 34 H 1.08009 * 119.95476 * 180.32232 * 4 3 2 35 35 H 0.97001 * 119.99581 * 359.71912 * 8 6 5 36 36 H 1.07990 * 125.81157 * 0.02562 * 10 9 8 37 37 H 0.96999 * 120.00219 * 180.02562 * 16 15 13 38 38 H 1.08000 * 126.25048 * 359.93409 * 21 9 8 39 39 H 1.07999 * 120.12999 * 180.25250 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1977 0.0000 4 6 3.5760 1.2063 0.0062 5 6 4.2838 0.0023 -0.0001 6 6 5.7621 0.0116 -0.0001 7 8 6.3767 -1.0375 -0.0006 8 7 6.4288 1.1829 0.0064 9 6 7.8339 1.1918 0.0121 10 6 8.6695 0.0602 0.0181 11 7 9.9141 0.4659 0.0197 12 7 9.9228 1.8666 0.0237 13 6 11.0377 2.6682 0.0318 14 1 10.9335 3.7391 -0.0607 15 6 12.3003 2.1011 0.1589 16 7 12.4370 0.7954 0.1539 17 14 13.8026 3.1969 0.3368 18 1 14.1228 3.3679 1.7768 19 1 14.9571 2.5705 -0.3559 20 1 13.5223 4.5235 -0.2689 21 6 8.6262 2.2934 0.0185 22 6 3.5926 -1.2081 -0.0005 23 6 2.2021 -1.2082 -0.0005 24 6 1.4587 -2.4935 -0.0004 25 7 0.1272 -2.6483 0.0055 26 7 -0.1109 -3.9159 -0.0003 27 7 1.0086 -4.5514 -0.0003 28 1 1.1060 -5.5166 -0.0007 29 7 1.9797 -3.7042 -0.0003 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6523 2.1308 0.0004 34 1 4.1095 2.1454 0.0115 35 1 5.9385 2.0199 0.0070 36 1 8.3403 -0.9684 0.0187 37 1 13.3182 0.3997 0.2429 38 1 8.2921 3.3204 0.0190 39 1 4.1349 -2.1421 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605823466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:28 Heat of formation + Delta-G solvation = 183.347244 kcal Electronic energy + Delta-G solvation = -27056.340195 eV Core-core repulsion = 23003.442270 eV Total energy + Delta-G solvation = -4052.897925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.49242 -41.81343 -40.89635 -39.50101 -36.00577 -35.62918 -35.06397 -34.58605 -33.65912 -32.22491 -31.63186 -29.85111 -28.36143 -26.75119 -25.93861 -25.11489 -23.86549 -22.83821 -22.76562 -21.71192 -21.14766 -20.10303 -19.30233 -18.67593 -18.17808 -17.41926 -17.09451 -16.56964 -16.35840 -16.16128 -16.09738 -15.64983 -15.15612 -15.10790 -14.90971 -14.71811 -14.61742 -14.52336 -13.63817 -13.48379 -13.29848 -13.04638 -12.93310 -12.84837 -12.80455 -12.61692 -12.44042 -12.38420 -12.05794 -12.01427 -11.84206 -11.61140 -11.02442 -10.85771 -10.75981 -10.09321 -9.88903 -9.69587 -8.51430 -8.46181 -6.22947 -0.42894 -0.07038 0.16858 1.16696 1.30227 1.39540 1.41187 1.59418 1.66692 1.92817 2.02128 2.25165 2.47280 2.63853 2.88423 2.91681 3.10049 3.13876 3.69774 3.85828 3.96261 4.00061 4.21794 4.37194 4.39140 4.46917 4.56889 4.68407 4.84160 4.94416 4.98510 5.02124 5.06407 5.22770 5.27254 5.31181 5.40136 5.45321 5.57217 5.59044 5.83042 5.97548 6.32098 6.72326 6.74834 7.10006 7.35401 7.48490 7.68950 8.53454 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028571 B = 0.002036 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.772834 B =13749.043835 C =14708.107474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.015 4.015 3 C -0.116 4.116 4 C -0.052 4.052 5 C -0.146 4.146 6 C 0.540 3.460 7 O -0.578 6.578 8 N -0.606 5.606 9 C -0.045 4.045 10 C -0.060 4.060 11 N -0.312 5.312 12 N -0.168 5.168 13 C -0.353 4.353 14 H 0.143 0.857 15 C -0.008 4.008 16 N -0.826 5.826 17 Si 1.020 2.980 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.241 1.241 21 C -0.076 4.076 22 C -0.031 4.031 23 C -0.046 4.046 24 C 0.212 3.788 25 N -0.275 5.275 26 N -0.056 5.056 27 N -0.201 5.201 28 H 0.493 0.507 29 N -0.307 5.307 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.180 0.820 34 H 0.162 0.838 35 H 0.420 0.580 36 H 0.165 0.835 37 H 0.276 0.724 38 H 0.193 0.807 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.381 1.269 -0.070 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.017 4.017 3 C -0.134 4.134 4 C -0.071 4.071 5 C -0.149 4.149 6 C 0.330 3.670 7 O -0.459 6.459 8 N -0.251 5.251 9 C -0.151 4.151 10 C -0.236 4.236 11 N -0.144 5.144 12 N 0.063 4.937 13 C -0.484 4.484 14 H 0.161 0.839 15 C -0.220 4.220 16 N -0.454 5.454 17 Si 0.839 3.161 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.164 1.164 21 C -0.226 4.226 22 C -0.052 4.052 23 C -0.050 4.050 24 C -0.067 4.067 25 N -0.147 5.147 26 N -0.050 5.050 27 N -0.052 5.052 28 H 0.352 0.648 29 N -0.159 5.159 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.197 0.803 34 H 0.180 0.820 35 H 0.259 0.741 36 H 0.182 0.818 37 H 0.086 0.914 38 H 0.210 0.790 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.139 -0.404 -0.065 24.142 hybrid contribution 0.514 -0.275 0.081 0.588 sum -23.625 -0.680 0.016 23.635 Atomic orbital electron populations 1.21294 0.88194 1.05266 1.04036 1.20488 0.98114 0.90971 0.92174 1.21351 0.92999 0.98647 1.00389 1.21818 0.95256 0.96911 0.93160 1.19555 0.90676 0.95360 1.09358 1.18676 0.88090 0.83149 0.77119 1.90661 1.69932 1.33285 1.51992 1.42250 1.02900 1.09077 1.70843 1.17306 0.83459 0.92897 1.21467 1.24169 0.90478 0.99639 1.09286 1.78154 1.18718 0.90019 1.27475 1.44859 1.04615 1.03849 1.40389 1.20639 0.82821 0.91585 1.53320 0.83943 1.26910 1.03177 0.97639 0.94241 1.70408 1.25423 1.12311 1.37210 0.84569 0.74568 0.78069 0.78940 1.19231 1.20318 1.16350 1.22028 0.83908 0.98975 1.17677 1.21087 0.92615 0.98138 0.93406 1.17107 0.90865 0.87865 1.09146 1.23685 0.88548 0.92486 1.01979 1.76107 1.13135 1.06411 1.19058 1.78841 1.11478 1.00143 1.14578 1.47761 1.00082 1.13226 1.44106 0.64799 1.75017 1.18519 1.00237 1.22164 0.89754 0.88716 0.89346 0.80310 0.82016 0.74081 0.81790 0.91446 0.79002 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.18 71.23 0.65 -1.00 16 2 C -0.01 -0.25 5.91 -19.60 -0.12 -0.37 16 3 C -0.12 -1.50 9.67 22.20 0.21 -1.29 16 4 C -0.05 -0.88 9.54 22.56 0.22 -0.67 16 5 C -0.15 -3.89 5.87 -20.12 -0.12 -4.01 16 6 C 0.54 19.62 7.74 86.78 0.67 20.29 16 7 O -0.58 -26.66 13.49 -3.98 -0.05 -26.71 16 8 N -0.61 -20.80 5.41 -306.52 -1.66 -22.46 16 9 C -0.05 -2.08 6.90 37.75 0.26 -1.82 16 10 C -0.06 -3.36 10.85 85.42 0.93 -2.44 16 11 N -0.31 -19.05 10.42 -56.46 -0.59 -19.63 16 12 N -0.17 -9.34 3.74 -190.00 -0.71 -10.05 16 13 C -0.35 -18.57 10.24 84.01 0.86 -17.71 16 14 H 0.14 6.43 7.84 -2.91 -0.02 6.41 16 15 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 16 N -0.83 -48.08 11.84 21.66 0.26 -47.83 16 17 Si 1.02 38.55 29.55 68.60 2.03 40.58 16 18 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 20 H -0.24 -8.11 7.11 99.48 0.71 -7.40 16 21 C -0.08 -3.44 11.49 83.38 0.96 -2.48 16 22 C -0.03 -0.85 9.24 22.74 0.21 -0.64 16 23 C -0.05 -1.06 5.87 -20.07 -0.12 -1.18 16 24 C 0.21 4.87 7.78 137.39 1.07 5.94 16 25 N -0.27 -5.73 9.06 -52.17 -0.47 -6.20 16 26 N -0.06 -1.00 13.47 37.02 0.50 -0.50 16 27 N -0.20 -2.94 7.90 37.02 0.29 -2.65 16 28 H 0.49 2.42 8.96 -347.53 -3.12 -0.70 16 29 N -0.31 -6.71 12.08 -52.12 -0.63 -7.34 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 32 H 0.09 1.42 5.13 -2.39 -0.01 1.40 16 33 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 34 H 0.16 1.73 6.39 -2.91 -0.02 1.71 16 35 H 0.42 9.91 6.85 -92.71 -0.64 9.28 16 36 H 0.17 9.32 5.91 -2.92 -0.02 9.31 16 37 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.19 6.66 8.06 -2.91 -0.02 6.64 16 39 H 0.12 3.89 7.47 -2.91 -0.02 3.86 16 Total: -1.00 -84.51 343.26 2.54 -81.98 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -2.58 Total: 28.15 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 6.16 Total: -7.33 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -3.01 Total: -116.66 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -84.51 2.54 -81.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605823466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 265.323 kcal (2) G-P(sol) polarization free energy of solvation -84.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds