Wall clock time and date at job start Tue Mar 31 2020 22:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34809 * 126.13512 * 2 1 4 4 H 0.97002 * 125.83004 * 359.96110 * 3 2 1 5 5 N 1.39999 * 108.33996 * 180.22289 * 3 2 1 6 6 C 1.31103 * 108.47631 * 359.61333 * 5 3 2 7 7 N 1.39924 * 126.02995 * 180.11541 * 6 5 3 8 8 C 1.34778 * 119.99996 * 0.30801 * 7 6 5 9 9 O 1.21568 * 120.00122 * 359.97438 * 8 7 6 10 10 C 1.47851 * 120.00049 * 179.97438 * 8 7 6 11 11 C 1.39937 * 120.02697 * 359.72851 * 10 8 7 12 12 C 1.38319 * 120.35578 * 179.69025 * 11 10 8 13 13 C 1.37755 * 120.41709 * 0.60840 * 12 11 10 14 14 C 1.40761 * 120.04107 * 359.67082 * 13 12 11 15 15 C 1.41434 * 120.17847 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99953 * 150.17282 * 15 14 13 17 17 C 1.39932 * 119.99949 * 330.18006 * 15 14 13 18 18 N 1.30826 * 120.00149 * 161.72997 * 17 15 14 19 19 Si 1.86801 * 120.00048 * 341.72667 * 17 15 14 20 20 H 1.48500 * 109.46934 * 95.41636 * 19 17 15 21 21 H 1.48507 * 109.47314 * 215.41638 * 19 17 15 22 22 H 1.48497 * 109.47336 * 335.41489 * 19 17 15 23 23 C 1.39010 * 120.02913 * 179.97438 * 10 8 7 24 24 C 1.36361 * 126.13203 * 179.97438 * 2 1 3 25 25 C 1.48461 * 126.24640 * 359.97438 * 24 2 1 26 26 N 1.33680 * 126.30117 * 359.68888 * 25 24 2 27 27 N 1.28577 * 109.84715 * 179.81385 * 26 25 24 28 28 N 1.28919 * 109.71479 * 0.45733 * 27 26 25 29 29 H 0.97003 * 126.42596 * 179.68574 * 28 27 26 30 30 N 1.31973 * 126.31119 * 180.02562 * 25 24 2 31 31 H 1.08997 * 109.46750 * 89.97867 * 1 2 3 32 32 H 1.08999 * 109.47303 * 209.97842 * 1 2 3 33 33 H 1.09007 * 109.46731 * 329.98109 * 1 2 3 34 34 H 0.96998 * 120.00039 * 180.30600 * 7 6 5 35 35 H 1.08001 * 119.81626 * 359.97438 * 11 10 8 36 36 H 1.07999 * 119.79630 * 180.30031 * 12 11 10 37 37 H 1.07998 * 119.98458 * 179.69761 * 13 12 11 38 38 H 0.97004 * 120.00229 * 179.97438 * 18 17 15 39 39 H 1.08006 * 120.20263 * 359.97438 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3020 1.0888 0.0000 4 1 2.0017 2.0111 -0.0005 5 7 3.6350 0.6609 -0.0052 6 6 3.6506 -0.6500 0.0002 7 7 4.7919 -1.4595 -0.0001 8 6 6.0168 -0.8974 -0.0001 9 8 6.1302 0.3130 -0.0002 10 6 7.2228 -1.7527 0.0001 11 6 7.0930 -3.1461 0.0061 12 6 8.2166 -3.9528 -0.0001 13 6 9.4760 -3.3946 0.0004 14 6 9.6265 -1.9950 0.0003 15 6 10.9181 -1.4188 0.0004 16 1 11.0807 -0.4578 -0.4649 17 6 11.9854 -2.0939 0.6031 18 7 13.2170 -1.7651 0.3092 19 14 11.6515 -3.4647 1.8274 20 1 11.6928 -4.7740 1.1280 21 1 12.6858 -3.4397 2.8928 22 1 10.3105 -3.2701 2.4349 23 6 8.4865 -1.1735 -0.0003 24 6 2.3111 -1.1013 0.0005 25 6 1.8616 -2.5163 0.0017 26 7 0.5953 -2.9444 0.0083 27 7 0.5690 -4.2299 0.0033 28 7 1.7735 -4.6895 0.0032 29 1 2.0335 -5.6240 0.0043 30 7 2.6386 -3.5830 0.0026 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3634 -0.8902 0.5135 33 1 -0.3633 0.8899 0.5142 34 1 4.7015 -2.4253 -0.0004 35 1 6.1102 -3.5939 0.0109 36 1 8.1060 -5.0271 -0.0004 37 1 10.3485 -4.0311 0.0005 38 1 13.9569 -2.2328 0.7273 39 1 8.5915 -0.0986 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606014687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:35 Heat of formation + Delta-G solvation = 188.567561 kcal Electronic energy + Delta-G solvation = -27738.146299 eV Core-core repulsion = 23685.474744 eV Total energy + Delta-G solvation = -4052.671555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.37688 -41.60621 -39.43317 -37.38123 -34.94243 -34.21608 -33.72754 -33.07697 -32.15138 -30.94433 -30.25032 -29.83430 -27.48558 -25.37428 -24.81632 -23.86898 -23.43197 -21.46976 -20.83444 -20.45209 -19.63310 -18.72762 -18.26706 -17.23858 -16.75746 -16.43069 -16.12778 -15.53441 -15.47152 -14.88750 -14.71719 -14.53902 -14.35577 -13.94683 -13.73701 -13.20109 -13.02803 -12.83894 -12.78227 -12.69431 -12.38212 -12.07701 -11.68247 -11.56602 -11.14994 -11.09784 -11.01909 -10.97268 -10.82573 -10.74112 -10.55767 -10.04361 -9.75945 -9.49156 -9.20579 -8.82812 -8.44704 -7.91670 -7.80094 -7.03273 -4.58226 0.61505 1.32205 1.65671 1.90006 2.13143 2.37584 2.48222 2.85400 3.03528 3.15562 3.18973 3.24519 3.65433 3.68907 3.90904 3.93858 4.43205 4.45225 4.66836 4.82943 5.18170 5.22969 5.27921 5.29927 5.35840 5.54991 5.65132 5.81875 5.88729 5.99698 6.29134 6.34517 6.58984 6.62086 6.71723 6.87390 6.96179 7.14529 7.23642 7.36891 7.45430 7.71661 7.78928 7.90906 7.96783 8.25272 8.48854 8.53377 8.68122 9.98755 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017655 B = 0.002835 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.601560 B = 9875.386097 C =11231.934858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.168 3.832 3 N -0.461 5.461 4 H 0.447 0.553 5 N -0.269 5.269 6 C 0.350 3.650 7 N -0.637 5.637 8 C 0.557 3.443 9 O -0.495 6.495 10 C -0.107 4.107 11 C -0.216 4.216 12 C -0.081 4.081 13 C -0.220 4.220 14 C 0.082 3.918 15 C -0.441 4.441 16 H 0.095 0.905 17 C 0.083 3.917 18 N -0.802 5.802 19 Si 0.910 3.090 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.243 1.243 23 C -0.131 4.131 24 C -0.208 4.208 25 C 0.303 3.697 26 N -0.305 5.305 27 N 0.010 4.990 28 N -0.295 5.295 29 H 0.470 0.530 30 N -0.309 5.309 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.426 0.574 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.287 0.713 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.870 -3.877 0.503 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.032 3.968 3 N -0.168 5.168 4 H 0.293 0.707 5 N -0.099 5.099 6 C 0.089 3.911 7 N -0.290 5.290 8 C 0.347 3.653 9 O -0.366 6.366 10 C -0.110 4.110 11 C -0.236 4.236 12 C -0.099 4.099 13 C -0.240 4.240 14 C 0.079 3.921 15 C -0.469 4.469 16 H 0.113 0.887 17 C -0.136 4.136 18 N -0.426 5.426 19 Si 0.736 3.264 20 H -0.195 1.195 21 H -0.216 1.216 22 H -0.166 1.166 23 C -0.151 4.151 24 C -0.226 4.226 25 C 0.022 3.978 26 N -0.184 5.184 27 N 0.013 4.987 28 N -0.142 5.142 29 H 0.325 0.675 30 N -0.153 5.153 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.267 0.733 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.978 -2.430 0.509 23.112 hybrid contribution 0.002 -1.778 0.473 1.840 sum -22.976 -4.208 0.982 23.379 Atomic orbital electron populations 1.20728 0.85691 1.05144 1.04492 1.21015 0.94856 0.86256 0.94697 1.46162 1.03949 1.08207 1.58518 0.70717 1.78195 0.93473 1.08835 1.29368 1.19184 0.86079 0.89680 0.96166 1.43322 1.02362 1.10210 1.73086 1.19106 0.82668 0.88385 0.75150 1.90805 1.85796 1.14169 1.45810 1.19256 0.91470 0.92931 1.07333 1.20417 0.97067 0.91907 1.14234 1.20491 0.92662 0.97735 0.99002 1.21201 0.96048 0.95191 1.11539 1.17683 0.93166 0.91188 0.90080 1.19526 0.90100 1.06171 1.31073 0.88747 1.26172 0.94226 0.96883 0.96348 1.69690 0.99946 1.37669 1.35253 0.86319 0.79936 0.80172 0.79941 1.19506 1.21614 1.16616 1.21280 0.90022 0.99302 1.04500 1.16411 0.90809 0.86725 1.28688 1.22476 0.86900 0.93056 0.95386 1.75383 1.19900 1.00799 1.22322 1.78282 1.06013 1.05294 1.09064 1.50901 1.01399 1.11442 1.50465 0.67498 1.78750 1.16543 0.92739 1.27232 0.89156 0.87657 0.90452 0.73315 0.88427 0.88140 0.87778 0.90265 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 9.99 36.01 0.36 -0.25 16 2 C 0.17 1.70 7.24 -81.96 -0.59 1.11 16 3 N -0.46 -4.99 7.32 33.64 0.25 -4.75 16 4 H 0.45 3.06 8.96 -182.67 -1.64 1.42 16 5 N -0.27 -4.46 10.89 31.57 0.34 -4.12 16 6 C 0.35 5.71 7.81 -154.35 -1.21 4.51 16 7 N -0.64 -11.05 5.39 -11.82 -0.06 -11.11 16 8 C 0.56 11.56 7.74 -12.33 -0.10 11.47 16 9 O -0.49 -11.56 15.05 5.31 0.08 -11.48 16 10 C -0.11 -2.31 5.87 -105.04 -0.62 -2.92 16 11 C -0.22 -4.21 9.55 -38.92 -0.37 -4.58 16 12 C -0.08 -1.62 10.01 -39.73 -0.40 -2.02 16 13 C -0.22 -5.07 7.17 -38.81 -0.28 -5.35 16 14 C 0.08 2.04 5.10 -106.87 -0.55 1.50 16 15 C -0.44 -11.75 9.57 -37.73 -0.36 -12.11 16 16 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 17 C 0.08 2.14 5.40 -17.35 -0.09 2.05 16 18 N -0.80 -20.99 13.93 55.55 0.77 -20.22 16 19 Si 0.91 20.15 24.52 -169.99 -4.17 15.98 16 20 H -0.27 -5.69 6.71 56.52 0.38 -5.31 16 21 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.24 -5.51 6.86 56.52 0.39 -5.12 16 23 C -0.13 -3.14 9.34 -38.44 -0.36 -3.50 16 24 C -0.21 -2.74 6.10 -105.18 -0.64 -3.38 16 25 C 0.30 3.75 8.09 -156.46 -1.27 2.49 16 26 N -0.31 -3.41 10.41 32.13 0.33 -3.07 16 27 N 0.01 0.09 13.42 60.35 0.81 0.91 16 28 N -0.29 -2.46 8.44 60.35 0.51 -1.95 16 29 H 0.47 1.87 8.96 -331.92 -2.98 -1.10 16 30 N -0.31 -3.63 11.33 32.14 0.36 -3.26 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.73 6.55 -51.93 -0.34 0.39 16 33 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 34 H 0.43 6.60 5.19 -40.82 -0.21 6.39 16 35 H 0.10 1.58 6.38 -52.49 -0.33 1.24 16 36 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.10 2.37 4.72 -52.49 -0.25 2.12 16 38 H 0.29 6.76 8.30 -40.82 -0.34 6.43 16 39 H 0.12 2.87 7.64 -52.48 -0.40 2.46 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -33.36 339.45 -9.13 -42.48 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.01 Total: 6.49 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -6.46 Total: -11.02 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 3.32 Total: -47.57 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.17 Total: 15.98 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.36 -9.13 -42.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606014687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.051 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 197.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds