Wall clock time and date at job start Tue Mar 31 2020 22:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99666 * 2 1 4 4 H 1.48505 * 109.46935 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46958 * 299.99940 * 3 2 1 6 6 H 1.48493 * 109.47029 * 59.99961 * 3 2 1 7 7 C 1.37876 * 120.00416 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00434 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99813 * 0.02562 * 7 2 1 10 10 O 1.42895 * 112.93708 * 309.66457 * 9 7 2 11 11 C 1.53936 * 113.73341 * 81.22772 * 9 7 2 12 12 N 1.48300 * 86.06206 * 138.13112 * 11 9 7 13 13 C 1.38471 * 111.00798 * 222.42122 * 12 11 9 14 14 C 1.41425 * 121.40152 * 47.93579 * 13 12 11 15 15 C 1.40025 * 122.06695 * 0.02955 * 14 13 12 16 16 C 1.36317 * 119.49403 * 180.02562 * 15 14 13 17 17 C 1.39298 * 120.84547 * 359.86981 * 16 15 14 18 18 C 1.36195 * 121.12434 * 0.08369 * 17 16 15 19 19 C 1.40408 * 119.66457 * 359.97438 * 18 17 16 20 20 N 1.33791 * 121.60255 * 180.02562 * 19 18 17 21 21 N 1.28380 * 121.91929 * 179.97438 * 20 19 18 22 22 C 1.33119 * 123.23792 * 359.76202 * 21 20 19 23 23 C 1.48293 * 119.91090 * 180.27905 * 22 21 20 24 24 N 1.34104 * 126.68749 * 185.12493 * 23 22 21 25 25 N 1.28986 * 107.26452 * 179.87093 * 24 23 22 26 26 N 1.28730 * 108.95979 * 0.40139 * 25 24 23 27 27 H 0.96996 * 125.32997 * 179.78368 * 26 25 24 28 28 N 1.28870 * 109.33309 * 359.74239 * 26 25 24 29 29 C 1.47969 * 90.75489 * 335.31011 * 12 11 9 30 30 H 0.96999 * 120.00302 * 359.97438 * 1 2 3 31 31 H 0.96705 * 114.00351 * 50.32952 * 10 9 7 32 32 H 1.09000 * 113.76153 * 252.50148 * 11 9 7 33 33 H 1.08997 * 113.76262 * 23.86827 * 11 9 7 34 34 H 1.07998 * 120.24779 * 359.95571 * 15 14 13 35 35 H 1.08004 * 119.57848 * 179.97438 * 16 15 14 36 36 H 1.08003 * 119.43643 * 180.02562 * 17 16 15 37 37 H 1.07994 * 120.16887 * 179.97438 * 18 17 16 38 38 H 1.09002 * 113.75779 * 270.37055 * 29 12 11 39 39 H 1.08989 * 113.86196 * 139.01442 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.2448 -2.5613 1.0132 11 6 0.7558 -2.9286 -1.3923 12 7 1.1879 -4.2953 -1.0120 13 6 1.8353 -4.9219 -2.0636 14 6 2.8557 -4.2699 -2.7941 15 6 3.2653 -2.9645 -2.4961 16 6 4.2541 -2.3861 -3.2351 17 6 4.8628 -3.0781 -4.2796 18 6 4.4886 -4.3492 -4.5945 19 6 3.4727 -4.9775 -3.8565 20 7 3.0750 -6.2248 -4.1321 21 7 2.1472 -6.8053 -3.4610 22 6 1.5117 -6.2275 -2.4439 23 6 0.4544 -6.9693 -1.7152 24 7 -0.3334 -6.4911 -0.7410 25 7 -1.1161 -7.4494 -0.3767 26 7 -0.8449 -8.4983 -1.0720 27 1 -1.2898 -9.3562 -0.9898 28 7 0.1096 -8.2295 -1.8950 29 6 2.1611 -3.7399 -0.0456 30 1 -0.4850 0.8400 0.0004 31 1 -0.3473 -1.7968 1.0268 32 1 -0.3214 -2.8280 -1.5256 33 1 1.3291 -2.4995 -2.2139 34 1 2.8005 -2.4196 -1.6878 35 1 4.5708 -1.3791 -3.0067 36 1 5.6443 -2.5981 -4.8500 37 1 4.9707 -4.8712 -5.4078 38 1 3.1446 -3.5474 -0.4743 39 1 2.2074 -4.2858 0.8966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606346415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:58 Heat of formation + Delta-G solvation = 233.608517 kcal Electronic energy + Delta-G solvation = -29733.502073 eV Core-core repulsion = 25682.783640 eV Total energy + Delta-G solvation = -4050.718433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.17163 -41.82755 -39.38571 -37.72480 -35.10197 -34.08724 -33.43889 -32.35424 -31.80841 -31.30415 -30.45997 -27.78349 -25.60889 -25.42910 -25.14814 -24.08416 -23.45766 -22.46679 -21.51919 -19.54926 -19.04943 -18.05463 -17.90856 -17.41677 -16.89983 -16.24608 -15.56038 -15.45332 -15.08368 -15.00481 -14.70775 -14.12880 -13.96846 -13.70142 -13.57392 -12.88368 -12.66565 -12.43234 -12.07226 -12.05880 -11.82565 -11.68082 -11.45087 -11.40275 -11.09937 -11.06030 -10.98970 -10.83963 -10.76372 -10.57719 -10.28190 -9.79990 -9.72988 -9.43460 -9.15836 -8.84386 -8.44021 -8.06268 -8.04072 -6.45933 -4.59415 0.02612 0.48923 1.36532 1.77220 2.30119 2.40718 3.06848 3.10406 3.17643 3.18847 3.50599 3.96043 3.98872 4.09284 4.21066 4.45075 4.60370 4.68699 4.79104 4.92144 5.11116 5.25782 5.32100 5.47445 5.63541 5.69008 5.71512 5.85249 5.89570 5.94665 6.00349 6.08520 6.22539 6.35136 6.46455 6.56418 6.57985 6.68504 6.80914 6.82730 7.10475 7.54482 7.68743 7.74859 8.43817 8.45242 8.71008 9.13039 9.48120 10.59369 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.005304 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.624847 B = 5278.107260 C = 7602.669890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.079 3.921 3 Si 0.901 3.099 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.257 3.743 10 O -0.562 6.562 11 C -0.025 4.025 12 N -0.427 5.427 13 C 0.161 3.839 14 C -0.108 4.108 15 C -0.113 4.113 16 C -0.108 4.108 17 C -0.084 4.084 18 C -0.097 4.097 19 C 0.080 3.920 20 N -0.220 5.220 21 N -0.181 5.181 22 C 0.107 3.893 23 C 0.232 3.768 24 N -0.198 5.198 25 N -0.063 5.063 26 N -0.239 5.239 27 H 0.471 0.529 28 N -0.274 5.274 29 C 0.002 3.998 30 H 0.274 0.726 31 H 0.390 0.610 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.195 0.805 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.081 0.919 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.392 -7.648 -5.853 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.126 4.126 3 Si 0.727 3.273 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.090 0.910 9 C 0.215 3.785 10 O -0.373 6.373 11 C -0.151 4.151 12 N -0.148 5.148 13 C 0.051 3.949 14 C -0.119 4.119 15 C -0.130 4.130 16 C -0.128 4.128 17 C -0.105 4.105 18 C -0.119 4.119 19 C -0.047 4.047 20 N -0.075 5.075 21 N -0.036 5.036 22 C -0.029 4.029 23 C -0.050 4.050 24 N -0.072 5.072 25 N -0.059 5.059 26 N -0.084 5.084 27 H 0.325 0.675 28 N -0.127 5.127 29 C -0.124 4.124 30 H 0.084 0.916 31 H 0.244 0.756 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.211 0.789 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.099 0.901 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.677 -9.930 -5.935 12.138 hybrid contribution 0.588 2.505 -0.068 2.574 sum 4.265 -7.425 -6.003 10.457 Atomic orbital electron populations 1.69431 1.06184 1.28219 1.48597 1.25061 0.94952 0.99769 0.92770 0.86391 0.80181 0.82597 0.78097 1.19295 1.20572 1.20468 1.21616 0.93801 0.90401 1.53283 0.91000 1.19651 0.85254 0.90313 0.83332 1.86102 1.46749 1.49583 1.54840 1.25579 1.02546 0.83913 1.03076 1.66592 1.24265 1.17979 1.05948 1.20911 0.89424 0.92559 0.92048 1.19555 0.97817 0.97154 0.97345 1.22620 0.96140 0.92964 1.01321 1.21169 0.95866 1.00781 0.94988 1.21118 0.98754 0.94076 0.96543 1.20669 0.96192 0.95106 0.99897 1.20365 0.97036 0.92711 0.94636 1.73756 1.06779 1.07157 1.19832 1.72947 1.01032 1.28111 1.01548 1.19026 0.96712 0.90729 0.96442 1.22522 0.98512 0.87354 0.96578 1.76655 1.02543 1.18656 1.09315 1.79087 1.19388 0.90769 1.16612 1.47817 1.23403 1.14525 1.22619 0.67524 1.75059 1.05641 1.17159 1.14881 1.24720 0.94772 0.96917 0.95968 0.91567 0.75595 0.89589 0.90017 0.78880 0.84547 0.84861 0.84163 0.90098 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.69 11.20 55.43 0.62 -21.07 16 2 C 0.08 1.86 5.40 -17.82 -0.10 1.77 16 3 Si 0.90 18.35 29.54 -169.99 -5.02 13.33 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 7 C -0.55 -12.90 7.09 -34.44 -0.24 -13.15 16 8 H 0.07 1.61 7.59 -52.49 -0.40 1.21 16 9 C 0.26 5.88 1.34 -90.84 -0.12 5.76 16 10 O -0.56 -14.20 13.48 -35.23 -0.48 -14.67 16 11 C -0.03 -0.55 6.90 -2.57 -0.02 -0.57 16 12 N -0.43 -8.84 4.59 -173.52 -0.80 -9.63 16 13 C 0.16 3.13 5.20 -83.07 -0.43 2.70 16 14 C -0.11 -1.92 5.23 -106.66 -0.56 -2.48 16 15 C -0.11 -1.88 6.21 -39.60 -0.25 -2.13 16 16 C -0.11 -1.46 9.96 -39.88 -0.40 -1.86 16 17 C -0.08 -0.96 9.94 -39.92 -0.40 -1.36 16 18 C -0.10 -1.26 10.00 -39.50 -0.39 -1.65 16 19 C 0.08 1.32 6.68 -84.84 -0.57 0.76 16 20 N -0.22 -3.89 11.53 32.21 0.37 -3.52 16 21 N -0.18 -3.39 11.41 33.42 0.38 -3.00 16 22 C 0.11 2.05 6.85 -82.59 -0.57 1.49 16 23 C 0.23 4.30 8.00 -156.27 -1.25 3.05 16 24 N -0.20 -3.81 11.02 32.14 0.35 -3.46 16 25 N -0.06 -1.00 13.47 60.35 0.81 -0.19 16 26 N -0.24 -2.96 7.90 60.35 0.48 -2.48 16 27 H 0.47 3.16 8.96 -340.36 -3.05 0.10 16 28 N -0.27 -4.32 12.39 32.15 0.40 -3.92 16 29 C 0.00 0.04 6.88 -2.76 -0.02 0.02 16 30 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 31 H 0.39 9.96 6.60 45.56 0.30 10.26 16 32 H 0.09 1.99 8.14 -51.93 -0.42 1.57 16 33 H 0.08 1.70 4.61 -51.93 -0.24 1.46 16 34 H 0.19 3.61 1.84 -52.49 -0.10 3.51 16 35 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 36 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 37 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.08 1.54 5.01 -51.93 -0.26 1.28 16 39 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -29.07 326.89 -8.25 -37.32 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -4.99 Total: 14.02 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -5.31 Total: -7.65 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 2.62 Total: -47.27 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.48 Total: -14.67 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.33 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.07 -8.25 -37.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606346415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 270.927 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 241.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 233.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds