Wall clock time and date at job start Tue Mar 31 2020 22:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99666 * 2 1 4 4 H 1.48505 * 109.46935 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46958 * 299.99940 * 3 2 1 6 6 H 1.48493 * 109.47029 * 59.99961 * 3 2 1 7 7 C 1.37876 * 120.00416 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00434 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99813 * 0.02562 * 7 2 1 10 10 O 1.42895 * 112.93708 * 309.66457 * 9 7 2 11 11 C 1.53936 * 113.73341 * 81.22772 * 9 7 2 12 12 N 1.48300 * 86.06206 * 138.13112 * 11 9 7 13 13 C 1.38471 * 111.00798 * 222.42122 * 12 11 9 14 14 C 1.41425 * 121.40152 * 47.93579 * 13 12 11 15 15 C 1.40025 * 122.06695 * 0.02955 * 14 13 12 16 16 C 1.36317 * 119.49403 * 180.02562 * 15 14 13 17 17 C 1.39298 * 120.84547 * 359.86981 * 16 15 14 18 18 C 1.36195 * 121.12434 * 0.08369 * 17 16 15 19 19 C 1.40408 * 119.66457 * 359.97438 * 18 17 16 20 20 N 1.33791 * 121.60255 * 180.02562 * 19 18 17 21 21 N 1.28380 * 121.91929 * 179.97438 * 20 19 18 22 22 C 1.33119 * 123.23792 * 359.76202 * 21 20 19 23 23 C 1.48293 * 119.91090 * 180.27905 * 22 21 20 24 24 N 1.34104 * 126.68749 * 185.12493 * 23 22 21 25 25 N 1.28986 * 107.26452 * 179.87093 * 24 23 22 26 26 N 1.28730 * 108.95979 * 0.40139 * 25 24 23 27 27 H 0.96996 * 125.32997 * 179.78368 * 26 25 24 28 28 N 1.28870 * 109.33309 * 359.74239 * 26 25 24 29 29 C 1.47969 * 90.75489 * 335.31011 * 12 11 9 30 30 H 0.96999 * 120.00302 * 359.97438 * 1 2 3 31 31 H 0.96705 * 114.00351 * 50.32952 * 10 9 7 32 32 H 1.09000 * 113.76153 * 252.50148 * 11 9 7 33 33 H 1.08997 * 113.76262 * 23.86827 * 11 9 7 34 34 H 1.07998 * 120.24779 * 359.95571 * 15 14 13 35 35 H 1.08004 * 119.57848 * 179.97438 * 16 15 14 36 36 H 1.08003 * 119.43643 * 180.02562 * 17 16 15 37 37 H 1.07994 * 120.16887 * 179.97438 * 18 17 16 38 38 H 1.09002 * 113.75779 * 270.37055 * 29 12 11 39 39 H 1.08989 * 113.86196 * 139.01442 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.2448 -2.5613 1.0132 11 6 0.7558 -2.9286 -1.3923 12 7 1.1879 -4.2953 -1.0120 13 6 1.8353 -4.9219 -2.0636 14 6 2.8557 -4.2699 -2.7941 15 6 3.2653 -2.9645 -2.4961 16 6 4.2541 -2.3861 -3.2351 17 6 4.8628 -3.0781 -4.2796 18 6 4.4886 -4.3492 -4.5945 19 6 3.4727 -4.9775 -3.8565 20 7 3.0750 -6.2248 -4.1321 21 7 2.1472 -6.8053 -3.4610 22 6 1.5117 -6.2275 -2.4439 23 6 0.4544 -6.9693 -1.7152 24 7 -0.3334 -6.4911 -0.7410 25 7 -1.1161 -7.4494 -0.3767 26 7 -0.8449 -8.4983 -1.0720 27 1 -1.2898 -9.3562 -0.9898 28 7 0.1096 -8.2295 -1.8950 29 6 2.1611 -3.7399 -0.0456 30 1 -0.4850 0.8400 0.0004 31 1 -0.3473 -1.7968 1.0268 32 1 -0.3214 -2.8280 -1.5256 33 1 1.3291 -2.4995 -2.2139 34 1 2.8005 -2.4196 -1.6878 35 1 4.5708 -1.3791 -3.0067 36 1 5.6443 -2.5981 -4.8500 37 1 4.9707 -4.8712 -5.4078 38 1 3.1446 -3.5474 -0.4743 39 1 2.2074 -4.2858 0.8966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606346415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:57 Heat of formation + Delta-G solvation = 210.408416 kcal Electronic energy + Delta-G solvation = -29734.508105 eV Core-core repulsion = 25682.783640 eV Total energy + Delta-G solvation = -4051.724465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.44863 -43.20608 -40.89178 -38.90333 -36.78953 -35.43873 -34.76726 -34.15335 -33.22943 -32.56585 -31.67951 -29.36393 -27.14385 -27.09919 -26.45430 -25.39709 -24.80915 -23.73208 -22.84834 -21.04154 -20.40671 -19.57495 -19.16664 -18.92263 -18.17182 -17.68480 -17.19994 -16.93345 -16.43950 -16.30909 -16.21238 -15.59356 -15.30572 -15.11598 -15.01862 -14.33708 -14.09963 -13.83083 -13.60953 -13.29766 -13.26233 -13.12496 -13.06834 -12.80516 -12.74340 -12.38401 -12.27892 -12.20912 -12.15970 -12.08945 -11.99896 -11.36853 -11.05819 -10.93454 -10.64663 -10.34410 -10.18688 -9.70158 -9.26564 -8.23480 -6.42924 -1.26010 -0.77063 0.12347 0.56717 0.99254 1.36686 1.46772 1.52319 1.61712 1.85902 2.23410 2.39411 2.56300 2.76187 2.82466 2.98233 3.23544 3.32169 3.44334 3.74927 3.77274 3.98402 4.08303 4.16440 4.21268 4.24643 4.33209 4.42669 4.47874 4.56628 4.70423 4.79286 4.95868 4.98792 5.05033 5.10970 5.25937 5.32546 5.42394 5.64218 5.73352 5.74356 5.94481 6.14460 6.64049 7.15702 7.31419 7.36722 7.52450 8.81969 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.005304 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.624847 B = 5278.107260 C = 7602.669890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.036 3.964 3 Si 0.963 3.037 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.287 1.287 7 C -0.558 4.558 8 H 0.080 0.920 9 C 0.241 3.759 10 O -0.580 6.580 11 C -0.014 4.014 12 N -0.429 5.429 13 C 0.131 3.869 14 C -0.110 4.110 15 C -0.150 4.150 16 C -0.084 4.084 17 C -0.067 4.067 18 C -0.090 4.090 19 C 0.064 3.936 20 N -0.219 5.219 21 N -0.198 5.198 22 C 0.099 3.901 23 C 0.214 3.786 24 N -0.239 5.239 25 N -0.066 5.066 26 N -0.200 5.200 27 H 0.495 0.505 28 N -0.269 5.269 29 C 0.011 3.989 30 H 0.274 0.726 31 H 0.384 0.616 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.173 0.827 35 H 0.162 0.838 36 H 0.185 0.815 37 H 0.172 0.828 38 H 0.098 0.902 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.165 -7.185 -7.797 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.166 4.166 3 Si 0.788 3.212 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.213 1.213 7 C -0.595 4.595 8 H 0.098 0.902 9 C 0.200 3.800 10 O -0.390 6.390 11 C -0.140 4.140 12 N -0.150 5.150 13 C 0.021 3.979 14 C -0.120 4.120 15 C -0.168 4.168 16 C -0.103 4.103 17 C -0.087 4.087 18 C -0.111 4.111 19 C -0.064 4.064 20 N -0.074 5.074 21 N -0.054 5.054 22 C -0.037 4.037 23 C -0.067 4.067 24 N -0.112 5.112 25 N -0.061 5.061 26 N -0.051 5.051 27 H 0.354 0.646 28 N -0.124 5.124 29 C -0.115 4.115 30 H 0.084 0.916 31 H 0.237 0.763 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.189 0.811 35 H 0.179 0.821 36 H 0.202 0.798 37 H 0.189 0.811 38 H 0.116 0.884 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.441 -9.513 -7.870 13.925 hybrid contribution -0.200 2.280 0.435 2.329 sum 6.241 -7.233 -7.435 12.106 Atomic orbital electron populations 1.69526 1.07487 1.28803 1.49548 1.25784 0.95573 1.02696 0.92516 0.85424 0.79650 0.78656 0.77499 1.17848 1.20381 1.21321 1.21806 0.94187 0.90594 1.52936 0.90157 1.19910 0.85268 0.91479 0.83352 1.86085 1.47389 1.49444 1.56109 1.25328 1.00727 0.85213 1.02736 1.66415 1.24733 1.17137 1.06691 1.20903 0.91107 0.93111 0.92810 1.19616 0.97308 0.97645 0.97436 1.22414 0.98666 0.92932 1.02786 1.21612 0.93428 1.01576 0.93731 1.21618 0.98622 0.93109 0.95333 1.21134 0.94581 0.95682 0.99710 1.20769 0.98182 0.92347 0.95070 1.73646 1.06334 1.07876 1.19568 1.72913 1.01939 1.28549 1.01998 1.19125 0.96981 0.90888 0.96661 1.22578 0.99019 0.88129 0.97015 1.76633 1.03763 1.20227 1.10533 1.78996 1.19080 0.91154 1.16895 1.47845 1.21809 1.14872 1.20535 0.64590 1.75009 1.06072 1.16124 1.15162 1.24628 0.95353 0.95639 0.95876 0.91608 0.76274 0.92391 0.89147 0.81071 0.82054 0.79777 0.81067 0.88437 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.94 11.20 21.45 0.24 -45.70 16 2 C 0.04 1.69 5.40 84.66 0.46 2.15 16 3 Si 0.96 37.14 29.54 68.60 2.03 39.16 16 4 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.29 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.56 -26.21 7.09 25.60 0.18 -26.03 16 8 H 0.08 3.54 7.59 -2.91 -0.02 3.52 16 9 C 0.24 11.47 1.34 -10.89 -0.01 11.46 16 10 O -0.58 -30.82 13.48 -148.98 -2.01 -32.83 16 11 C -0.01 -0.62 6.90 86.34 0.60 -0.02 16 12 N -0.43 -18.59 4.59 -706.12 -3.24 -21.82 16 13 C 0.13 5.22 5.20 39.25 0.20 5.43 16 14 C -0.11 -3.84 5.23 -21.19 -0.11 -3.95 16 15 C -0.15 -4.79 6.21 22.26 0.14 -4.65 16 16 C -0.08 -1.93 9.96 22.08 0.22 -1.71 16 17 C -0.07 -1.15 9.94 22.05 0.22 -0.93 16 18 C -0.09 -1.94 10.00 22.32 0.22 -1.71 16 19 C 0.06 2.01 6.68 40.25 0.27 2.28 16 20 N -0.22 -7.54 11.53 -52.02 -0.60 -8.14 16 21 N -0.20 -7.46 11.41 -48.17 -0.55 -8.01 16 22 C 0.10 3.89 6.85 42.00 0.29 4.18 16 23 C 0.21 8.16 8.00 137.29 1.10 9.26 16 24 N -0.24 -9.55 11.02 -52.24 -0.58 -10.12 16 25 N -0.07 -2.13 13.47 37.02 0.50 -1.63 16 26 N -0.20 -4.83 7.90 37.02 0.29 -4.54 16 27 H 0.49 5.91 8.96 -347.53 -3.12 2.80 16 28 N -0.27 -8.45 12.39 -52.19 -0.65 -9.10 16 29 C 0.01 0.47 6.88 86.41 0.59 1.06 16 30 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 31 H 0.38 20.76 6.60 -74.05 -0.49 20.27 16 32 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.09 3.90 4.61 -2.39 -0.01 3.89 16 34 H 0.17 6.34 1.84 -2.91 -0.01 6.33 16 35 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 38 H 0.10 3.79 5.01 -2.39 -0.01 3.77 16 39 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -66.28 326.89 -2.61 -68.89 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: -2.41 Total: 37.03 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 4.36 Total: -3.19 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -4.58 Total: -109.06 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -2.01 Total: -32.83 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.16 kcal Total: -66.28 -2.61 -68.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606346415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 279.300 kcal (2) G-P(sol) polarization free energy of solvation -66.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 213.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 210.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds