Wall clock time and date at job start Tue Mar 31 2020 22:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00430 * 2 1 4 4 H 1.48502 * 109.47237 * 240.00606 * 3 2 1 5 5 H 1.48507 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47087 * 120.00159 * 3 2 1 7 7 C 1.37881 * 119.99463 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99712 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00252 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47333 * 180.02562 * 9 7 2 11 11 C 1.38399 * 120.00088 * 179.97438 * 10 9 7 12 12 N 1.32498 * 119.18747 * 0.02562 * 11 10 9 13 13 C 1.32434 * 120.88582 * 180.02562 * 12 11 10 14 14 C 1.38235 * 119.27023 * 0.02562 * 13 12 11 15 15 C 1.39404 * 118.50713 * 359.97438 * 14 13 12 16 16 O 1.35516 * 120.46621 * 179.97438 * 15 14 13 17 17 C 1.35914 * 117.99994 * 185.82697 * 16 15 14 18 18 C 1.38840 * 119.99676 * 250.35934 * 17 16 15 19 19 C 1.38190 * 120.17900 * 180.02562 * 18 17 16 20 20 C 1.38089 * 120.17478 * 359.95374 * 19 18 17 21 21 C 1.39306 * 119.99755 * 0.02562 * 20 19 18 22 22 C 1.48463 * 120.08763 * 179.97438 * 21 20 19 23 23 N 1.34048 * 126.67304 * 179.68856 * 22 21 20 24 24 N 1.28985 * 107.26877 * 179.83475 * 23 22 21 25 25 N 1.28731 * 108.94285 * 0.44025 * 24 23 22 26 26 H 0.96998 * 125.34010 * 179.74772 * 25 24 23 27 27 N 1.28872 * 109.31578 * 359.71879 * 25 24 23 28 28 C 1.38517 * 119.99672 * 70.33416 * 17 16 15 29 29 N 1.32455 * 119.18314 * 180.27317 * 11 10 9 30 30 H 0.97001 * 119.99154 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47054 * 59.99857 * 9 7 2 32 32 H 1.08999 * 109.47048 * 300.00421 * 9 7 2 33 33 H 0.97003 * 119.99719 * 0.02562 * 10 9 7 34 34 H 1.08000 * 120.36171 * 180.02562 * 13 12 11 35 35 H 1.08007 * 120.74586 * 179.97438 * 14 13 12 36 36 H 1.07997 * 119.91091 * 0.02562 * 18 17 16 37 37 H 1.07998 * 119.91302 * 179.97438 * 19 18 17 38 38 H 1.08003 * 120.00008 * 180.29975 * 20 19 18 39 39 H 1.07999 * 120.09258 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1031 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 1.7414 -4.9176 0.0000 12 7 0.4354 -5.1411 0.0000 13 6 -0.0429 -6.3760 0.0010 14 6 0.8374 -7.4418 0.0026 15 6 2.2056 -7.1746 0.0026 16 8 3.1038 -8.1894 0.0047 17 6 4.4207 -7.8756 0.1264 18 6 5.2748 -8.0335 -0.9568 19 6 6.6145 -7.7162 -0.8371 20 6 7.1105 -7.2394 0.3602 21 6 6.2600 -7.0778 1.4515 22 6 6.7913 -6.5659 2.7399 23 7 6.0950 -6.3549 3.8658 24 7 6.9228 -5.9129 4.7507 25 7 8.0944 -5.8318 4.2234 26 1 8.8940 -5.5236 4.6777 27 7 8.0382 -6.2249 2.9974 28 6 4.9103 -7.3979 1.3308 29 7 2.6163 -5.9120 0.0055 30 1 -0.4849 0.8401 0.0004 31 1 0.6239 -2.5567 -0.8903 32 1 0.6246 -2.5570 0.8896 33 1 3.1566 -3.4355 -0.0002 34 1 -1.1091 -6.5485 0.0006 35 1 0.4734 -8.4587 0.0039 36 1 4.8913 -8.4054 -1.8954 37 1 7.2751 -7.8411 -1.6822 38 1 8.1570 -6.9877 0.4492 39 1 4.2469 -7.2737 2.1740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606349496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:31 Heat of formation + Delta-G solvation = 160.516324 kcal Electronic energy + Delta-G solvation = -27489.162083 eV Core-core repulsion = 23435.274135 eV Total energy + Delta-G solvation = -4053.887948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.54155 -42.33074 -40.91579 -39.04782 -36.96152 -35.50387 -34.74367 -34.65046 -34.04385 -32.08738 -31.78830 -30.75814 -28.84687 -26.09504 -25.78758 -25.51705 -24.99224 -23.78433 -23.08237 -22.55378 -20.39547 -19.90690 -19.73280 -18.29882 -18.21409 -17.68283 -17.33682 -16.99611 -16.77963 -16.55948 -16.18573 -16.13262 -15.71498 -15.24023 -15.00453 -14.71634 -14.65051 -14.57023 -14.05303 -13.96040 -13.79225 -13.39057 -12.90745 -12.87657 -12.75677 -12.48572 -12.36717 -12.25193 -12.21637 -12.00550 -11.73027 -11.64037 -11.50456 -10.91064 -10.55087 -10.18672 -9.91466 -9.71874 -8.89766 -8.29439 -6.44594 -0.42349 0.00018 0.11547 0.32479 0.35376 1.17010 1.35219 1.40431 1.44028 1.52072 1.80158 2.13789 2.40638 2.56738 2.76955 2.96746 3.05575 3.08943 3.31748 3.81681 3.88390 3.89906 4.01121 4.08175 4.23624 4.32780 4.41548 4.48220 4.52471 4.69242 4.79748 5.08621 5.19530 5.23019 5.29885 5.31646 5.32556 5.50813 5.55898 5.66836 5.82143 5.85885 6.21174 6.32166 6.65931 6.76743 7.03573 7.24402 7.50580 8.81957 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008049 B = 0.003498 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3477.870827 B = 8001.571981 C =10224.522796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.293 3.707 10 N -0.682 5.682 11 C 0.581 3.419 12 N -0.614 5.614 13 C 0.212 3.788 14 C -0.300 4.300 15 C 0.377 3.623 16 O -0.239 6.239 17 C 0.072 3.928 18 C -0.094 4.094 19 C -0.095 4.095 20 C -0.073 4.073 21 C -0.021 4.021 22 C 0.209 3.791 23 N -0.303 5.303 24 N -0.058 5.058 25 N -0.197 5.197 26 H 0.496 0.504 27 N -0.284 5.284 28 C -0.087 4.087 29 N -0.630 5.630 30 H 0.270 0.730 31 H -0.001 1.001 32 H -0.004 1.004 33 H 0.407 0.593 34 H 0.211 0.789 35 H 0.183 0.817 36 H 0.155 0.845 37 H 0.179 0.821 38 H 0.159 0.841 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.458 -18.873 1.422 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.602 4.602 8 H 0.088 0.912 9 C 0.170 3.830 10 N -0.314 5.314 11 C 0.224 3.776 12 N -0.341 5.341 13 C 0.046 3.954 14 C -0.326 4.326 15 C 0.190 3.810 16 O -0.143 6.143 17 C 0.030 3.970 18 C -0.113 4.113 19 C -0.113 4.113 20 C -0.092 4.092 21 C -0.024 4.024 22 C -0.071 4.071 23 N -0.175 5.175 24 N -0.053 5.053 25 N -0.048 5.048 26 H 0.355 0.645 27 N -0.137 5.137 28 C -0.108 4.108 29 N -0.369 5.369 30 H 0.079 0.921 31 H 0.017 0.983 32 H 0.014 0.986 33 H 0.243 0.757 34 H 0.228 0.772 35 H 0.201 0.799 36 H 0.172 0.828 37 H 0.196 0.804 38 H 0.177 0.823 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 16.425 -17.720 2.083 24.251 hybrid contribution 0.559 0.423 0.262 0.749 sum 16.984 -17.296 2.345 24.354 Atomic orbital electron populations 1.70097 1.07787 1.28602 1.49484 1.25885 0.95799 1.03209 0.93787 0.85314 0.78117 0.77264 0.79169 1.18931 1.20352 1.19346 1.21536 0.93893 0.91178 1.53584 0.91229 1.18509 0.87582 0.82037 0.94833 1.44801 1.10176 1.00856 1.75596 1.19206 0.84914 0.86270 0.87227 1.68138 1.13603 1.26776 1.25604 1.23518 1.02158 0.84611 0.85070 1.21827 0.89062 1.03997 1.17723 1.20221 0.88673 0.84577 0.87511 1.84650 1.14274 1.29245 1.86130 1.18586 0.81853 1.02693 0.93908 1.21615 0.94246 0.98166 0.97277 1.21360 0.94359 0.97284 0.98277 1.21517 1.00607 0.96057 0.91069 1.17113 0.92876 1.03507 0.88928 1.23767 0.86281 1.01346 0.95698 1.76135 1.25462 1.16498 0.99393 1.78881 0.89853 1.14694 1.21901 1.47797 1.11749 1.39509 1.05757 0.64488 1.74832 1.20932 1.18096 0.99799 1.21142 0.94998 0.97121 0.97504 1.67390 1.39916 0.99654 1.29961 0.92093 0.98267 0.98620 0.75709 0.77235 0.79950 0.82781 0.80385 0.82344 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.05 13.29 21.45 0.28 -54.76 16 2 C 0.01 0.77 5.46 84.65 0.46 1.23 16 3 Si 0.98 43.37 29.54 68.60 2.03 45.40 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.56 -31.91 9.28 25.60 0.24 -31.68 16 8 H 0.07 3.73 7.60 -2.91 -0.02 3.71 16 9 C 0.29 16.30 5.40 85.63 0.46 16.76 16 10 N -0.68 -32.58 5.70 -354.82 -2.02 -34.60 16 11 C 0.58 25.51 8.42 261.51 2.20 27.71 16 12 N -0.61 -25.74 9.58 -198.20 -1.90 -27.64 16 13 C 0.21 6.39 11.29 84.60 0.95 7.34 16 14 C -0.30 -8.15 10.12 22.55 0.23 -7.92 16 15 C 0.38 12.32 7.36 84.83 0.62 12.94 16 16 O -0.24 -6.90 9.99 -31.79 -0.32 -7.21 16 17 C 0.07 1.93 5.27 22.48 0.12 2.05 16 18 C -0.09 -1.89 9.98 22.40 0.22 -1.66 16 19 C -0.10 -1.47 10.03 22.22 0.22 -1.24 16 20 C -0.07 -1.33 9.70 22.49 0.22 -1.11 16 21 C -0.02 -0.52 5.87 -20.05 -0.12 -0.64 16 22 C 0.21 5.47 7.94 137.38 1.09 6.56 16 23 N -0.30 -9.00 12.23 -52.18 -0.64 -9.64 16 24 N -0.06 -1.40 13.47 37.02 0.50 -0.90 16 25 N -0.20 -3.17 7.90 37.02 0.29 -2.88 16 26 H 0.50 2.54 8.96 -347.54 -3.12 -0.58 16 27 N -0.28 -5.80 12.08 -52.13 -0.63 -6.43 16 28 C -0.09 -2.49 9.08 22.58 0.21 -2.29 16 29 N -0.63 -24.42 9.21 -310.84 -2.86 -27.28 16 30 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.41 18.42 8.44 -92.71 -0.78 17.64 16 34 H 0.21 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.18 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 37 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.16 2.15 7.88 -2.91 -0.02 2.13 16 39 H 0.11 3.73 7.89 -2.91 -0.02 3.70 16 Total: -1.00 -77.65 357.07 -0.88 -78.53 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -2.75 Total: 19.37 kcal Atomic # 6 Polarization: 20.91 SS G_CDS: 7.13 Total: 28.05 kcal Atomic # 7 Polarization: -157.16 SS G_CDS: -6.97 Total: -164.13 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.32 Total: -7.21 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -77.65 -0.88 -78.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.047 kcal (2) G-P(sol) polarization free energy of solvation -77.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds