Wall clock time and date at job start Tue Mar 31 2020 22:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86802 * 119.99731 * 2 1 4 4 H 1.48493 * 109.46986 * 269.99628 * 3 2 1 5 5 H 1.48495 * 109.47252 * 29.99491 * 3 2 1 6 6 H 1.48497 * 109.46847 * 149.99701 * 3 2 1 7 7 C 1.38654 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99890 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00179 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00329 * 185.04933 * 9 7 2 11 11 C 1.38899 * 120.06782 * 354.49354 * 10 9 7 12 12 C 1.38077 * 119.93414 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.06575 * 359.73956 * 12 11 10 14 14 C 1.38279 * 120.14114 * 0.51387 * 13 12 11 15 15 C 1.50694 * 119.96863 * 179.76848 * 14 13 12 16 16 N 1.46507 * 109.47142 * 269.71844 * 15 14 13 17 17 C 1.38576 * 120.00128 * 179.97438 * 16 15 14 18 18 C 1.39461 * 120.49392 * 0.02562 * 17 16 15 19 19 C 1.39189 * 118.22788 * 179.97438 * 18 17 16 20 20 C 1.48424 * 120.50736 * 180.02562 * 19 18 17 21 21 N 1.34063 * 126.67671 * 359.97438 * 20 19 18 22 22 N 1.28982 * 107.26393 * 179.97438 * 21 20 19 23 23 N 1.28732 * 108.95439 * 0.02562 * 22 21 20 24 24 H 0.96993 * 125.34422 * 179.97438 * 23 22 21 25 25 N 1.28874 * 109.31409 * 359.74974 * 23 22 21 26 26 N 1.33358 * 118.98722 * 359.97438 * 19 18 17 27 27 C 1.31634 * 120.88963 * 0.02562 * 26 19 18 28 28 N 1.31808 * 121.96290 * 0.25477 * 27 26 19 29 29 C 1.38127 * 120.06662 * 359.48614 * 14 13 12 30 30 H 0.97001 * 120.00234 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.03668 * 359.94745 * 11 10 9 32 32 H 1.07999 * 119.96790 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.93489 * 180.27620 * 13 12 11 34 34 H 1.09003 * 109.47501 * 149.72112 * 15 14 13 35 35 H 1.09003 * 109.47372 * 29.71885 * 15 14 13 36 36 H 0.97000 * 119.99496 * 0.02562 * 16 15 14 37 37 H 1.08007 * 120.88973 * 359.95274 * 18 17 16 38 38 H 1.07996 * 119.01518 * 179.97438 * 27 26 19 39 39 H 1.07997 * 120.03669 * 180.23571 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4469 2.6527 0.6999 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0699 -3.5045 0.1075 11 6 3.4574 -3.4393 0.0955 12 6 4.2025 -4.5966 0.2051 13 6 3.5686 -5.8195 0.3321 14 6 2.1876 -5.8883 0.3391 15 6 1.5011 -7.2232 0.4724 16 7 1.2724 -7.7899 -0.8591 17 6 0.6511 -9.0215 -0.9906 18 6 0.2388 -9.7302 0.1376 19 6 -0.3810 -10.9625 -0.0492 20 6 -0.8404 -11.7591 1.1159 21 7 -0.7283 -11.4242 2.4092 22 7 -1.2488 -12.3817 3.0990 23 7 -1.6764 -13.2917 2.2951 24 1 -2.1098 -14.1174 2.5618 25 7 -1.4425 -12.9312 1.0801 26 7 -0.5566 -11.4160 -1.2909 27 6 -0.1526 -10.7156 -2.3296 28 7 0.4430 -9.5475 -2.1946 29 6 1.4366 -4.7342 0.2299 30 1 -0.4850 0.8400 -0.0004 31 1 3.9529 -2.4845 0.0002 32 1 5.2813 -4.5466 0.1954 33 1 4.1535 -6.7230 0.4221 34 1 0.5455 -7.0913 0.9801 35 1 2.1301 -7.8990 1.0518 36 1 1.5566 -7.3032 -1.6486 37 1 0.3964 -9.3337 1.1297 38 1 -0.3097 -11.1119 -3.3219 39 1 0.3580 -4.7881 0.2393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606351091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:48 Heat of formation + Delta-G solvation = 183.234006 kcal Electronic energy + Delta-G solvation = -26535.762351 eV Core-core repulsion = 22482.859516 eV Total energy + Delta-G solvation = -4052.902835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.82638 -41.03598 -39.25618 -37.36148 -35.98700 -34.95928 -34.21541 -32.61331 -32.34314 -31.60822 -30.10739 -29.11840 -26.25059 -25.79840 -25.32933 -24.90497 -23.50795 -22.17718 -21.77281 -20.88736 -19.76389 -18.33925 -17.82585 -17.55746 -17.51452 -16.99099 -15.58822 -15.46561 -15.21478 -15.08183 -15.00084 -14.71033 -14.47650 -14.31693 -14.08095 -13.74727 -13.64841 -13.13752 -12.67745 -12.55828 -12.47900 -11.96135 -11.74420 -11.62817 -11.51615 -11.42228 -10.98375 -10.96714 -10.91758 -10.81605 -10.73092 -10.50278 -9.80797 -9.46973 -9.45087 -8.92710 -8.33899 -8.26645 -7.38307 -6.52310 -4.11921 0.28429 0.83176 1.11340 1.77686 1.85503 2.05388 2.21223 2.96799 3.05607 3.09291 3.11594 3.14360 3.68482 3.77409 3.89863 4.31495 4.42568 4.51243 4.63706 4.79634 4.89524 5.01564 5.11419 5.14807 5.30128 5.39329 5.41877 5.57143 5.63872 5.79517 5.96735 6.01561 6.04176 6.19197 6.47987 6.51933 6.75065 6.94117 7.05929 7.09553 7.22156 7.30639 7.45221 7.64777 7.77074 7.91439 8.08447 8.92887 9.60629 10.65250 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018390 B = 0.001946 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.203201 B =14383.947569 C =14668.306145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.175 6.175 10 C 0.149 3.851 11 C -0.222 4.222 12 C -0.076 4.076 13 C -0.192 4.192 14 C -0.076 4.076 15 C 0.168 3.832 16 N -0.692 5.692 17 C 0.447 3.553 18 C -0.247 4.247 19 C 0.275 3.725 20 C 0.218 3.782 21 N -0.251 5.251 22 N -0.047 5.047 23 N -0.228 5.228 24 H 0.477 0.523 25 N -0.254 5.254 26 N -0.544 5.544 27 C 0.346 3.654 28 N -0.573 5.573 29 C -0.168 4.168 30 H 0.271 0.729 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.415 0.585 37 H 0.155 0.845 38 H 0.202 0.798 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 -22.958 1.713 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.078 6.078 10 C 0.095 3.905 11 C -0.242 4.242 12 C -0.094 4.094 13 C -0.212 4.212 14 C -0.076 4.076 15 C 0.045 3.955 16 N -0.323 5.323 17 C 0.201 3.799 18 C -0.278 4.278 19 C 0.131 3.869 20 C -0.064 4.064 21 N -0.126 5.126 22 N -0.043 5.043 23 N -0.074 5.074 24 H 0.332 0.668 25 N -0.106 5.106 26 N -0.265 5.265 27 C 0.056 3.944 28 N -0.297 5.297 29 C -0.188 4.188 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.252 0.748 37 H 0.173 0.827 38 H 0.218 0.782 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.466 -23.105 1.665 23.169 hybrid contribution 0.535 0.952 0.199 1.110 sum 0.068 -22.153 1.864 22.232 Atomic orbital electron populations 1.70034 1.05984 1.27837 1.45564 1.25308 0.95861 0.98902 0.96408 0.85700 0.78930 0.79981 0.78768 1.19827 1.20195 1.19151 1.21324 0.91807 0.80722 1.53121 0.88997 1.83979 1.34288 1.11422 1.78107 1.19314 0.90266 0.88103 0.92773 1.21264 0.93843 0.99154 1.09931 1.20749 0.98645 0.92238 0.97818 1.20469 0.93248 0.97210 1.10261 1.19092 0.93465 0.92358 1.02710 1.20394 1.00188 0.92099 0.82807 1.44848 1.60838 1.16593 1.10037 1.18418 0.86603 0.86286 0.88589 1.22006 1.07820 0.97021 1.00965 1.17578 0.92324 0.89033 0.88004 1.23065 1.00480 0.90845 0.91981 1.76137 1.16576 1.18408 1.01433 1.78973 1.10013 0.94822 1.20442 1.47886 1.38914 1.19290 1.01325 0.66806 1.75145 1.17067 1.14748 1.03662 1.68229 1.23835 1.36440 0.97965 1.24618 0.87137 0.84974 0.97625 1.67971 1.21440 1.15577 1.24754 1.20078 0.99442 0.89854 1.09416 0.91898 0.85403 0.87203 0.87429 0.90501 0.90602 0.74794 0.82720 0.78186 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.67 13.67 55.48 0.76 -23.91 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.99 29.55 -169.99 -5.02 14.96 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.39 -10.63 9.49 30.89 0.29 -10.34 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 9 O -0.17 -4.79 9.76 0.08 0.00 -4.79 16 10 C 0.15 3.39 6.65 -39.11 -0.26 3.14 16 11 C -0.22 -4.52 9.17 -39.40 -0.36 -4.88 16 12 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 13 C -0.19 -2.96 9.70 -39.54 -0.38 -3.34 16 14 C -0.08 -1.18 5.25 -104.65 -0.55 -1.73 16 15 C 0.17 2.06 5.05 -5.19 -0.03 2.03 16 16 N -0.69 -8.52 5.70 -61.47 -0.35 -8.87 16 17 C 0.45 5.60 7.71 -154.78 -1.19 4.40 16 18 C -0.25 -2.93 9.05 -38.77 -0.35 -3.28 16 19 C 0.27 3.39 6.79 -82.66 -0.56 2.82 16 20 C 0.22 2.56 8.06 -156.30 -1.26 1.30 16 21 N -0.25 -2.93 12.30 32.15 0.40 -2.54 16 22 N -0.05 -0.45 13.47 60.35 0.81 0.36 16 23 N -0.23 -1.55 7.90 60.35 0.48 -1.08 16 24 H 0.48 0.79 8.96 -340.37 -3.05 -2.26 16 25 N -0.25 -2.56 12.40 32.17 0.40 -2.16 16 26 N -0.54 -6.61 10.40 -11.18 -0.12 -6.73 16 27 C 0.35 3.77 12.28 -92.28 -1.13 2.63 16 28 N -0.57 -7.16 10.46 -13.86 -0.15 -7.31 16 29 C -0.17 -3.24 9.65 -39.39 -0.38 -3.62 16 30 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.13 2.62 5.64 -52.48 -0.30 2.32 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.08 0.91 7.92 -51.93 -0.41 0.50 16 35 H 0.08 0.81 7.91 -51.93 -0.41 0.40 16 36 H 0.41 5.28 8.59 -40.82 -0.35 4.93 16 37 H 0.16 1.67 6.76 -52.48 -0.35 1.32 16 38 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -32.92 352.81 -10.11 -43.03 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.97 Total: 5.29 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -6.66 Total: -11.57 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 2.23 Total: -52.24 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: 0.00 Total: -4.79 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.92 -10.11 -43.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606351091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.263 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds