Wall clock time and date at job start Tue Mar 31 2020 22:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86802 * 119.99731 * 2 1 4 4 H 1.48493 * 109.46986 * 269.99628 * 3 2 1 5 5 H 1.48495 * 109.47252 * 29.99491 * 3 2 1 6 6 H 1.48497 * 109.46847 * 149.99701 * 3 2 1 7 7 C 1.38654 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99890 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00179 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00329 * 185.04933 * 9 7 2 11 11 C 1.38899 * 120.06782 * 354.49354 * 10 9 7 12 12 C 1.38077 * 119.93414 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.06575 * 359.73956 * 12 11 10 14 14 C 1.38279 * 120.14114 * 0.51387 * 13 12 11 15 15 C 1.50694 * 119.96863 * 179.76848 * 14 13 12 16 16 N 1.46507 * 109.47142 * 269.71844 * 15 14 13 17 17 C 1.38576 * 120.00128 * 179.97438 * 16 15 14 18 18 C 1.39461 * 120.49392 * 0.02562 * 17 16 15 19 19 C 1.39189 * 118.22788 * 179.97438 * 18 17 16 20 20 C 1.48424 * 120.50736 * 180.02562 * 19 18 17 21 21 N 1.34063 * 126.67671 * 359.97438 * 20 19 18 22 22 N 1.28982 * 107.26393 * 179.97438 * 21 20 19 23 23 N 1.28732 * 108.95439 * 0.02562 * 22 21 20 24 24 H 0.96993 * 125.34422 * 179.97438 * 23 22 21 25 25 N 1.28874 * 109.31409 * 359.74974 * 23 22 21 26 26 N 1.33358 * 118.98722 * 359.97438 * 19 18 17 27 27 C 1.31634 * 120.88963 * 0.02562 * 26 19 18 28 28 N 1.31808 * 121.96290 * 0.25477 * 27 26 19 29 29 C 1.38127 * 120.06662 * 359.48614 * 14 13 12 30 30 H 0.97001 * 120.00234 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.03668 * 359.94745 * 11 10 9 32 32 H 1.07999 * 119.96790 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.93489 * 180.27620 * 13 12 11 34 34 H 1.09003 * 109.47501 * 149.72112 * 15 14 13 35 35 H 1.09003 * 109.47372 * 29.71885 * 15 14 13 36 36 H 0.97000 * 119.99496 * 0.02562 * 16 15 14 37 37 H 1.08007 * 120.88973 * 359.95274 * 18 17 16 38 38 H 1.07996 * 119.01518 * 179.97438 * 27 26 19 39 39 H 1.07997 * 120.03669 * 180.23571 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4469 2.6527 0.6999 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0699 -3.5045 0.1075 11 6 3.4574 -3.4393 0.0955 12 6 4.2025 -4.5966 0.2051 13 6 3.5686 -5.8195 0.3321 14 6 2.1876 -5.8883 0.3391 15 6 1.5011 -7.2232 0.4724 16 7 1.2724 -7.7899 -0.8591 17 6 0.6511 -9.0215 -0.9906 18 6 0.2388 -9.7302 0.1376 19 6 -0.3810 -10.9625 -0.0492 20 6 -0.8404 -11.7591 1.1159 21 7 -0.7283 -11.4242 2.4092 22 7 -1.2488 -12.3817 3.0990 23 7 -1.6764 -13.2917 2.2951 24 1 -2.1098 -14.1174 2.5618 25 7 -1.4425 -12.9312 1.0801 26 7 -0.5566 -11.4160 -1.2909 27 6 -0.1526 -10.7156 -2.3296 28 7 0.4430 -9.5475 -2.1946 29 6 1.4366 -4.7342 0.2299 30 1 -0.4850 0.8400 -0.0004 31 1 3.9529 -2.4845 0.0002 32 1 5.2813 -4.5466 0.1954 33 1 4.1535 -6.7230 0.4221 34 1 0.5455 -7.0913 0.9801 35 1 2.1301 -7.8990 1.0518 36 1 1.5566 -7.3032 -1.6486 37 1 0.3964 -9.3337 1.1297 38 1 -0.3097 -11.1119 -3.3219 39 1 0.3580 -4.7881 0.2393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606351091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:47 Heat of formation + Delta-G solvation = 160.358869 kcal Electronic energy + Delta-G solvation = -26536.754292 eV Core-core repulsion = 22482.859516 eV Total energy + Delta-G solvation = -4053.894776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.57748 -41.93293 -40.83178 -38.78621 -37.19877 -35.76010 -35.04540 -34.30595 -33.51613 -32.63204 -31.31979 -30.59266 -27.62498 -26.94788 -26.64793 -25.74910 -24.43301 -23.26506 -23.04620 -22.36504 -20.52206 -19.68790 -19.06875 -18.71162 -18.45583 -18.25971 -16.80510 -16.56931 -16.47496 -16.21667 -16.04982 -16.01042 -15.82497 -15.48668 -15.24717 -15.03992 -14.88454 -14.42126 -14.07818 -13.89522 -13.52001 -13.43668 -13.01414 -12.78787 -12.52103 -12.43521 -12.38269 -12.29871 -12.27440 -12.12069 -11.79024 -11.75351 -11.20419 -10.81260 -10.66645 -10.37539 -9.77631 -9.21012 -9.02538 -8.46971 -6.15314 -0.57024 0.08307 0.22436 0.36633 0.71752 1.19168 1.29127 1.35658 1.44276 1.52855 2.01383 2.17479 2.24344 2.82873 2.88905 2.90738 3.16559 3.39304 3.51118 3.65527 3.74454 3.81865 4.04760 4.09998 4.31081 4.35704 4.39586 4.43331 4.53344 4.57751 4.60649 4.74004 5.01869 5.12121 5.17318 5.26769 5.54466 5.59960 5.63121 5.70714 5.72483 6.01793 6.11968 6.19516 6.47060 6.97962 7.00136 7.20185 7.78492 8.76052 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018390 B = 0.001946 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.203201 B =14383.947569 C =14668.306145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.412 4.412 8 H 0.103 0.897 9 O -0.232 6.232 10 C 0.109 3.891 11 C -0.234 4.234 12 C -0.073 4.073 13 C -0.165 4.165 14 C -0.060 4.060 15 C 0.174 3.826 16 N -0.694 5.694 17 C 0.441 3.559 18 C -0.248 4.248 19 C 0.267 3.733 20 C 0.202 3.798 21 N -0.272 5.272 22 N -0.050 5.050 23 N -0.196 5.196 24 H 0.497 0.503 25 N -0.259 5.259 26 N -0.555 5.555 27 C 0.346 3.654 28 N -0.588 5.588 29 C -0.179 4.179 30 H 0.272 0.728 31 H 0.119 0.881 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.412 0.588 37 H 0.164 0.836 38 H 0.234 0.766 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.212 -25.702 2.067 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.175 1.175 7 C -0.488 4.488 8 H 0.120 0.880 9 O -0.139 6.139 10 C 0.059 3.941 11 C -0.253 4.253 12 C -0.091 4.091 13 C -0.184 4.184 14 C -0.061 4.061 15 C 0.051 3.949 16 N -0.325 5.325 17 C 0.195 3.805 18 C -0.279 4.279 19 C 0.123 3.877 20 C -0.079 4.079 21 N -0.146 5.146 22 N -0.044 5.044 23 N -0.048 5.048 24 H 0.357 0.643 25 N -0.113 5.113 26 N -0.275 5.275 27 C 0.057 3.943 28 N -0.313 5.313 29 C -0.199 4.199 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.249 0.751 37 H 0.181 0.819 38 H 0.250 0.750 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.599 -25.934 2.038 26.063 hybrid contribution -0.040 1.308 0.119 1.314 sum 1.559 -24.625 2.156 24.769 Atomic orbital electron populations 1.70183 1.08024 1.28755 1.48932 1.26579 0.96834 1.02772 0.95972 0.84597 0.77859 0.74649 0.79203 1.18896 1.19782 1.17526 1.21805 0.92514 0.81387 1.53059 0.87968 1.83944 1.35930 1.12577 1.81470 1.19899 0.91649 0.87976 0.94609 1.21379 0.93078 1.00413 1.10441 1.21169 1.00408 0.91293 0.96227 1.21035 0.93205 0.98225 1.05950 1.19392 0.93839 0.92608 1.00243 1.20404 1.00719 0.90566 0.83236 1.44705 1.61293 1.16694 1.09759 1.18495 0.86777 0.86273 0.88960 1.22056 1.07814 0.96927 1.01128 1.17775 0.92244 0.89313 0.88348 1.23063 1.01414 0.91440 0.91981 1.76117 1.17549 1.19365 1.01522 1.78912 1.10115 0.94998 1.20421 1.47927 1.37219 1.19396 1.00226 0.64276 1.75096 1.17001 1.14376 1.04799 1.68291 1.24198 1.36832 0.98210 1.25299 0.85986 0.84322 0.98665 1.68013 1.22110 1.16323 1.24882 1.20270 0.99536 0.90180 1.09871 0.91903 0.86371 0.83535 0.83149 0.90177 0.87715 0.75104 0.81881 0.74983 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.13 13.67 21.61 0.30 -55.83 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 3 Si 1.02 42.28 29.55 68.60 2.03 44.31 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 7 C -0.41 -23.46 9.49 67.92 0.64 -22.81 16 8 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 9 O -0.23 -13.64 9.76 -22.64 -0.22 -13.86 16 10 C 0.11 5.14 6.65 22.58 0.15 5.29 16 11 C -0.23 -9.50 9.17 22.39 0.21 -9.29 16 12 C -0.07 -2.23 10.04 22.25 0.22 -2.01 16 13 C -0.17 -4.38 9.70 22.30 0.22 -4.17 16 14 C -0.06 -1.74 5.25 -19.88 -0.10 -1.85 16 15 C 0.17 3.76 5.05 85.63 0.43 4.20 16 16 N -0.69 -15.62 5.70 -348.40 -1.99 -17.60 16 17 C 0.44 10.24 7.71 133.10 1.03 11.27 16 18 C -0.25 -5.47 9.05 22.79 0.21 -5.26 16 19 C 0.27 6.21 6.79 41.86 0.28 6.49 16 20 C 0.20 4.47 8.06 137.36 1.11 5.57 16 21 N -0.27 -5.95 12.30 -52.19 -0.64 -6.60 16 22 N -0.05 -0.85 13.47 37.02 0.50 -0.36 16 23 N -0.20 -2.27 7.90 37.02 0.29 -1.98 16 24 H 0.50 0.44 8.96 -347.54 -3.12 -2.67 16 25 N -0.26 -4.77 12.40 -52.14 -0.65 -5.42 16 26 N -0.55 -12.59 10.40 -189.29 -1.97 -14.56 16 27 C 0.35 6.88 12.28 180.93 2.22 9.10 16 28 N -0.59 -13.73 10.46 -197.77 -2.07 -15.80 16 29 C -0.18 -7.01 9.65 22.39 0.22 -6.80 16 30 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.12 4.94 5.64 -2.91 -0.02 4.93 16 32 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 33 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.08 1.74 7.92 -2.39 -0.02 1.72 16 35 H 0.10 1.75 7.91 -2.39 -0.02 1.73 16 36 H 0.41 9.77 8.59 -92.71 -0.80 8.97 16 37 H 0.16 3.21 6.76 -2.91 -0.02 3.19 16 38 H 0.23 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -76.98 352.81 0.13 -76.85 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -2.74 Total: 22.00 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 7.29 Total: -11.15 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -6.23 Total: -118.14 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.22 Total: -13.86 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -76.98 0.13 -76.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606351091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.205 kcal (2) G-P(sol) polarization free energy of solvation -76.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds