Wall clock time and date at job start Tue Mar 31 2020 22:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.38852 * 120.00063 * 180.02562 * 16 15 14 18 18 N 1.32435 * 120.24250 * 359.71800 * 17 16 15 19 19 N 1.28294 * 122.18275 * 179.69834 * 18 17 16 20 20 C 1.31873 * 122.58120 * 0.60104 * 19 18 17 21 21 C 1.38531 * 120.13283 * 359.70219 * 20 19 18 22 22 C 1.39735 * 117.91424 * 0.02562 * 21 20 19 23 23 C 1.48366 * 121.16405 * 179.97438 * 22 21 20 24 24 N 1.34075 * 126.67931 * 179.70933 * 23 22 21 25 25 N 1.28981 * 107.26617 * 179.83647 * 24 23 22 26 26 N 1.28731 * 108.95030 * 0.43238 * 25 24 23 27 27 H 0.97003 * 125.33561 * 179.75753 * 26 25 24 28 28 N 1.28865 * 109.32788 * 359.72581 * 26 25 24 29 29 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 30 30 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 32 32 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 33 33 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 34 34 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 35 35 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 36 36 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 37 37 H 1.07994 * 119.93421 * 179.68646 * 20 19 18 38 38 H 1.08002 * 121.04767 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.03219 * 180.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6478 -9.0222 -1.0000 18 7 0.2633 -9.6946 0.0742 19 7 -0.3209 -10.8340 -0.0056 20 6 -0.5712 -11.4245 -1.1579 21 6 -0.2066 -10.8132 -2.3463 22 6 0.4257 -9.5691 -2.2749 23 6 0.8475 -8.8506 -3.5025 24 7 1.4541 -7.6564 -3.5631 25 7 1.6519 -7.3904 -4.8095 26 7 1.1891 -8.3575 -5.5220 27 1 1.2105 -8.4007 -6.4909 28 7 0.6936 -9.2594 -4.7465 29 6 1.4365 -4.7345 0.2253 30 1 -0.4849 0.8401 -0.0004 31 1 3.9527 -2.4857 -0.0140 32 1 5.2811 -4.5471 0.1902 33 1 4.1533 -6.7247 0.4045 34 1 2.1300 -7.9004 1.0433 35 1 0.5456 -7.0924 0.9734 36 1 1.5547 -7.3009 -1.6561 37 1 -1.0612 -12.3868 -1.1751 38 1 -0.4040 -11.2836 -3.2982 39 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606351776.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:41 Heat of formation + Delta-G solvation = 196.169222 kcal Electronic energy + Delta-G solvation = -27492.720985 eV Core-core repulsion = 23440.379062 eV Total energy + Delta-G solvation = -4052.341922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.81920 -41.04970 -39.13018 -37.20720 -35.96385 -34.83256 -34.37864 -32.36995 -32.25289 -31.80471 -29.85300 -28.95638 -26.42270 -25.82472 -25.18023 -24.66570 -23.12716 -22.67624 -21.65185 -20.76440 -19.75149 -18.04019 -17.66623 -17.49891 -17.36249 -16.97196 -16.80861 -15.45518 -15.16476 -15.03149 -14.64790 -14.60471 -14.35664 -14.11528 -13.79334 -13.54697 -13.53002 -12.92482 -12.58111 -12.41072 -12.32157 -12.00731 -11.68477 -11.62478 -11.53175 -11.41689 -11.23067 -10.86801 -10.82988 -10.73402 -10.58776 -10.42995 -9.98134 -9.79623 -9.35826 -8.85804 -8.19982 -8.02854 -7.27158 -6.45367 -4.04488 0.13379 0.81499 1.07031 1.87027 1.94038 1.96778 2.33191 3.07759 3.13100 3.13862 3.18983 3.33058 3.55401 3.67958 3.95693 4.11275 4.49368 4.55290 4.67981 4.76742 4.89652 4.99079 5.09057 5.14569 5.32096 5.46660 5.55365 5.58247 5.78908 5.84964 5.91285 6.00692 6.02077 6.13307 6.30851 6.60641 6.87201 6.97632 7.04393 7.24169 7.32532 7.40183 7.54387 7.76827 7.84067 7.99166 8.75049 9.00238 9.69978 10.72661 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.002695 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.463708 B =10386.842627 C =11239.437326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.151 3.849 11 C -0.223 4.223 12 C -0.077 4.077 13 C -0.191 4.191 14 C -0.073 4.073 15 C 0.170 3.830 16 N -0.684 5.684 17 C 0.379 3.621 18 N -0.300 5.300 19 N -0.181 5.181 20 C -0.033 4.033 21 C -0.031 4.031 22 C -0.093 4.093 23 C 0.228 3.772 24 N -0.274 5.274 25 N -0.028 5.028 26 N -0.223 5.223 27 H 0.478 0.522 28 N -0.291 5.291 29 C -0.168 4.168 30 H 0.269 0.731 31 H 0.128 0.872 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.427 0.573 37 H 0.174 0.826 38 H 0.155 0.845 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.115 -20.492 -9.783 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.098 3.902 11 C -0.243 4.243 12 C -0.095 4.095 13 C -0.210 4.210 14 C -0.074 4.074 15 C 0.047 3.953 16 N -0.320 5.320 17 C 0.133 3.867 18 N -0.155 5.155 19 N -0.024 5.024 20 C -0.201 4.201 21 C -0.062 4.062 22 C -0.113 4.113 23 C -0.052 4.052 24 N -0.148 5.148 25 N -0.023 5.023 26 N -0.069 5.069 27 H 0.333 0.667 28 N -0.143 5.143 29 C -0.187 4.187 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.273 0.727 37 H 0.191 0.809 38 H 0.173 0.827 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.932 -19.635 -8.323 21.413 hybrid contribution 0.524 0.750 -2.420 2.587 sum 2.456 -18.886 -10.743 21.866 Atomic orbital electron populations 1.70053 1.05952 1.27544 1.46126 1.25290 0.95840 0.98823 0.96572 0.85650 0.79142 0.80402 0.78249 1.19093 1.20179 1.20119 1.21368 0.91808 0.80788 1.52795 0.89015 1.83983 1.34259 1.11383 1.78471 1.19303 0.90248 0.88033 0.92662 1.21240 0.93835 0.99092 1.10125 1.20727 0.98533 0.92259 0.97983 1.20469 0.93323 0.97100 1.10136 1.19226 0.93515 0.92740 1.01927 1.20294 1.00401 0.91502 0.83108 1.45488 1.59299 1.15954 1.11248 1.20098 0.89048 0.88232 0.89330 1.73197 1.15098 1.03522 1.23651 1.72618 1.03365 1.01340 1.25102 1.23863 1.04571 1.02928 0.88749 1.22243 0.91183 0.91598 1.01198 1.17698 1.08946 0.97043 0.87588 1.23199 0.99424 0.91391 0.91158 1.75619 1.16657 1.13022 1.09499 1.79014 1.13872 1.12240 0.97215 1.47728 1.36232 1.10121 1.12840 0.66725 1.74867 1.20330 1.17478 1.01661 1.20078 0.99407 0.89876 1.09383 0.92079 0.85475 0.87309 0.87538 0.90502 0.90425 0.72743 0.80857 0.82710 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.39 -10.92 9.49 30.89 0.29 -10.63 16 8 H 0.09 2.37 5.21 -52.49 -0.27 2.09 16 9 O -0.18 -5.06 9.76 0.05 0.00 -5.06 16 10 C 0.15 3.64 6.65 -39.11 -0.26 3.38 16 11 C -0.22 -4.82 9.17 -39.39 -0.36 -5.19 16 12 C -0.08 -1.40 10.04 -39.61 -0.40 -1.80 16 13 C -0.19 -3.29 9.70 -39.54 -0.38 -3.68 16 14 C -0.07 -1.31 5.25 -104.65 -0.55 -1.86 16 15 C 0.17 2.60 5.84 -5.19 -0.03 2.57 16 16 N -0.68 -10.27 5.64 -61.26 -0.35 -10.61 16 17 C 0.38 5.33 7.58 -154.62 -1.17 4.16 16 18 N -0.30 -4.38 10.74 31.39 0.34 -4.04 16 19 N -0.18 -2.33 11.48 30.52 0.35 -1.98 16 20 C -0.03 -0.30 11.29 -17.43 -0.20 -0.50 16 21 C -0.03 -0.27 9.89 -38.91 -0.38 -0.66 16 22 C -0.09 -1.11 5.94 -104.32 -0.62 -1.73 16 23 C 0.23 2.75 7.94 -156.29 -1.24 1.51 16 24 N -0.27 -3.77 9.62 32.14 0.31 -3.46 16 25 N -0.03 -0.33 13.47 60.35 0.81 0.49 16 26 N -0.22 -1.71 7.90 60.35 0.48 -1.23 16 27 H 0.48 1.21 8.96 -340.36 -3.05 -1.84 16 28 N -0.29 -2.76 12.22 32.16 0.39 -2.37 16 29 C -0.17 -3.55 9.65 -39.40 -0.38 -3.93 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 32 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 35 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 36 H 0.43 6.69 5.20 -40.82 -0.21 6.48 16 37 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.16 0.90 8.01 -52.49 -0.42 0.48 16 39 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -34.28 349.00 -8.37 -42.65 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.92 Total: 6.78 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -5.78 Total: -17.36 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 3.09 Total: -47.78 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: 0.00 Total: -5.06 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.28 -8.37 -42.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606351776.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.823 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 204.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds