Wall clock time and date at job start Tue Mar 31 2020 22:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.38852 * 120.00063 * 180.02562 * 16 15 14 18 18 N 1.32435 * 120.24250 * 359.71800 * 17 16 15 19 19 N 1.28294 * 122.18275 * 179.69834 * 18 17 16 20 20 C 1.31873 * 122.58120 * 0.60104 * 19 18 17 21 21 C 1.38531 * 120.13283 * 359.70219 * 20 19 18 22 22 C 1.39735 * 117.91424 * 0.02562 * 21 20 19 23 23 C 1.48366 * 121.16405 * 179.97438 * 22 21 20 24 24 N 1.34075 * 126.67931 * 179.70933 * 23 22 21 25 25 N 1.28981 * 107.26617 * 179.83647 * 24 23 22 26 26 N 1.28731 * 108.95030 * 0.43238 * 25 24 23 27 27 H 0.97003 * 125.33561 * 179.75753 * 26 25 24 28 28 N 1.28865 * 109.32788 * 359.72581 * 26 25 24 29 29 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 30 30 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 32 32 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 33 33 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 34 34 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 35 35 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 36 36 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 37 37 H 1.07994 * 119.93421 * 179.68646 * 20 19 18 38 38 H 1.08002 * 121.04767 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.03219 * 180.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6478 -9.0222 -1.0000 18 7 0.2633 -9.6946 0.0742 19 7 -0.3209 -10.8340 -0.0056 20 6 -0.5712 -11.4245 -1.1579 21 6 -0.2066 -10.8132 -2.3463 22 6 0.4257 -9.5691 -2.2749 23 6 0.8475 -8.8506 -3.5025 24 7 1.4541 -7.6564 -3.5631 25 7 1.6519 -7.3904 -4.8095 26 7 1.1891 -8.3575 -5.5220 27 1 1.2105 -8.4007 -6.4909 28 7 0.6936 -9.2594 -4.7465 29 6 1.4365 -4.7345 0.2253 30 1 -0.4849 0.8401 -0.0004 31 1 3.9527 -2.4857 -0.0140 32 1 5.2811 -4.5471 0.1902 33 1 4.1533 -6.7247 0.4045 34 1 2.1300 -7.9004 1.0433 35 1 0.5456 -7.0924 0.9734 36 1 1.5547 -7.3009 -1.6561 37 1 -1.0612 -12.3868 -1.1751 38 1 -0.4040 -11.2836 -3.2982 39 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606351776.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:41 Heat of formation + Delta-G solvation = 171.488200 kcal Electronic energy + Delta-G solvation = -27493.791234 eV Core-core repulsion = 23440.379062 eV Total energy + Delta-G solvation = -4053.412172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.63831 -41.95315 -40.83776 -38.75470 -37.20064 -35.76107 -35.22400 -34.30958 -33.24261 -32.93693 -31.21864 -30.49144 -27.64838 -27.19120 -26.63311 -25.61140 -24.12111 -23.54801 -23.25275 -22.37459 -20.56325 -19.63583 -18.96297 -18.64093 -18.31085 -18.18904 -17.77826 -16.82477 -16.59839 -16.23908 -16.09610 -15.99264 -15.52328 -15.43928 -15.09100 -14.99850 -14.59635 -14.35847 -14.01192 -13.85570 -13.50300 -13.39699 -13.03238 -12.85952 -12.56897 -12.47624 -12.41533 -12.31524 -12.30844 -12.12901 -12.08697 -11.73475 -11.20806 -10.82510 -10.79834 -10.67477 -9.77781 -9.07505 -9.02741 -8.47225 -6.15768 -0.69527 -0.00729 0.21788 0.37600 0.70439 1.08803 1.27719 1.34915 1.43147 1.53476 2.06838 2.17193 2.42948 2.67652 2.83751 2.84662 3.15050 3.24052 3.42691 3.68342 3.82146 3.89907 3.99078 4.08413 4.11063 4.28697 4.30158 4.43270 4.52647 4.65538 4.67572 4.72002 4.76543 5.01923 5.11817 5.24596 5.25304 5.50469 5.61399 5.69598 5.71449 5.91246 6.01622 6.17116 6.47434 6.97357 6.97417 7.78086 7.85238 8.76325 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.002695 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.463708 B =10386.842627 C =11239.437326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.233 6.233 10 C 0.114 3.886 11 C -0.233 4.233 12 C -0.070 4.070 13 C -0.169 4.169 14 C -0.061 4.061 15 C 0.179 3.821 16 N -0.697 5.697 17 C 0.363 3.637 18 N -0.330 5.330 19 N -0.215 5.215 20 C -0.013 4.013 21 C -0.013 4.013 22 C -0.102 4.102 23 C 0.216 3.784 24 N -0.311 5.311 25 N -0.048 5.048 26 N -0.190 5.190 27 H 0.498 0.502 28 N -0.273 5.273 29 C -0.181 4.181 30 H 0.272 0.728 31 H 0.122 0.878 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.422 0.578 37 H 0.219 0.781 38 H 0.193 0.807 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 -23.523 -11.137 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.173 1.173 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.140 6.140 10 C 0.064 3.936 11 C -0.252 4.252 12 C -0.088 4.088 13 C -0.188 4.188 14 C -0.062 4.062 15 C 0.056 3.944 16 N -0.334 5.334 17 C 0.117 3.883 18 N -0.183 5.183 19 N -0.056 5.056 20 C -0.182 4.182 21 C -0.044 4.044 22 C -0.122 4.122 23 C -0.064 4.064 24 N -0.184 5.184 25 N -0.043 5.043 26 N -0.042 5.042 27 H 0.358 0.642 28 N -0.127 5.127 29 C -0.201 4.201 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.268 0.732 37 H 0.235 0.765 38 H 0.210 0.790 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.757 -22.739 -9.671 24.994 hybrid contribution -0.028 1.185 -2.141 2.447 sum 3.729 -21.554 -11.812 24.859 Atomic orbital electron populations 1.70204 1.08085 1.28686 1.49028 1.26609 0.96845 1.02779 0.95898 0.84519 0.78325 0.74786 0.78510 1.17281 1.19405 1.19389 1.21879 0.92566 0.81345 1.53020 0.87920 1.83949 1.35964 1.12571 1.81476 1.19816 0.91661 0.87749 0.94386 1.21367 0.92938 1.00415 1.10491 1.21154 1.00437 0.91101 0.96062 1.20987 0.93076 0.98287 1.06416 1.19502 0.94092 0.92773 0.99799 1.20142 1.00028 0.90219 0.83997 1.45292 1.60967 1.16810 1.10357 1.20203 0.89719 0.88036 0.90327 1.73115 1.16256 1.04541 1.24422 1.72550 1.04626 1.01311 1.27158 1.24606 1.02258 1.03696 0.87646 1.22700 0.88880 0.90027 1.02775 1.17916 1.09276 0.98101 0.86861 1.23275 0.99980 0.91261 0.91897 1.75583 1.18051 1.14236 1.10484 1.78961 1.14942 1.13267 0.97083 1.47813 1.33923 1.08717 1.13738 0.64188 1.74826 1.19709 1.17271 1.00852 1.20208 0.99273 0.90358 1.10297 0.91898 0.85996 0.83248 0.83631 0.88892 0.91342 0.73232 0.76490 0.78973 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.44 13.67 21.61 0.30 -57.15 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 3 Si 1.02 43.29 29.55 68.60 2.03 45.32 16 4 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.41 -24.26 9.49 67.92 0.64 -23.62 16 8 H 0.10 5.52 5.21 -2.91 -0.02 5.51 16 9 O -0.23 -14.29 9.76 -22.74 -0.22 -14.51 16 10 C 0.11 5.80 6.65 22.58 0.15 5.95 16 11 C -0.23 -10.17 9.17 22.39 0.21 -9.97 16 12 C -0.07 -2.38 10.04 22.25 0.22 -2.16 16 13 C -0.17 -5.39 9.70 22.30 0.22 -5.18 16 14 C -0.06 -2.17 5.25 -19.88 -0.10 -2.27 16 15 C 0.18 5.47 5.84 85.63 0.50 5.97 16 16 N -0.70 -20.88 5.64 -347.71 -1.96 -22.85 16 17 C 0.36 10.01 7.58 133.44 1.01 11.02 16 18 N -0.33 -9.46 10.74 -54.60 -0.59 -10.04 16 19 N -0.22 -5.20 11.48 -57.34 -0.66 -5.86 16 20 C -0.01 -0.19 11.29 84.76 0.96 0.77 16 21 C -0.01 -0.18 9.89 22.70 0.22 0.05 16 22 C -0.10 -2.27 5.94 -19.67 -0.12 -2.39 16 23 C 0.22 4.87 7.94 137.33 1.09 5.96 16 24 N -0.31 -8.39 9.62 -52.22 -0.50 -8.90 16 25 N -0.05 -1.06 13.47 37.02 0.50 -0.56 16 26 N -0.19 -2.51 7.90 37.02 0.29 -2.22 16 27 H 0.50 1.26 8.96 -347.53 -3.12 -1.86 16 28 N -0.27 -4.47 12.22 -52.17 -0.64 -5.11 16 29 C -0.18 -8.09 9.65 22.39 0.22 -7.88 16 30 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.12 5.37 5.64 -2.91 -0.02 5.36 16 32 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 34 H 0.09 2.51 8.08 -2.39 -0.02 2.49 16 35 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 36 H 0.42 13.35 5.20 -92.71 -0.48 12.87 16 37 H 0.22 1.16 8.06 -2.91 -0.02 1.13 16 38 H 0.19 1.25 8.01 -2.91 -0.02 1.22 16 39 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -81.99 349.00 1.79 -80.19 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: -2.43 Total: 26.35 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 5.68 Total: -24.67 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -3.26 Total: -112.69 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.22 Total: -14.51 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -81.99 1.79 -80.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606351776.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.680 kcal (2) G-P(sol) polarization free energy of solvation -81.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds