Wall clock time and date at job start Tue Mar 31 2020 22:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99820 * 2 1 4 4 O 1.20834 * 119.99974 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00144 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47277 * 180.02562 * 5 3 2 7 7 C 1.46504 * 119.99552 * 269.99905 * 6 5 3 8 8 C 1.50700 * 109.46932 * 275.47461 * 7 6 5 9 9 O 1.20824 * 119.99961 * 359.97438 * 8 7 6 10 10 O 1.34225 * 120.00198 * 180.02562 * 8 7 6 11 11 C 1.34775 * 120.00534 * 89.99433 * 6 5 3 12 12 O 1.21595 * 120.00045 * 5.26580 * 11 6 5 13 13 C 1.47431 * 120.00211 * 184.99069 * 11 6 5 14 14 C 1.41289 * 126.41100 * 316.73997 * 13 11 6 15 15 N 1.30449 * 108.02113 * 179.87813 * 14 13 11 16 16 N 1.39938 * 108.89919 * 0.38932 * 15 14 13 17 17 C 1.46496 * 125.75722 * 179.75275 * 16 15 14 18 18 C 1.50700 * 109.46914 * 269.99930 * 17 16 15 19 19 H 1.07997 * 120.00183 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00061 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00064 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47028 * 89.99880 * 22 20 18 24 24 H 1.48500 * 109.47167 * 209.99527 * 22 20 18 25 25 H 1.48503 * 109.47261 * 330.00159 * 22 20 18 26 26 C 1.34263 * 108.48487 * 359.74716 * 16 15 14 27 27 C 1.50705 * 126.28642 * 179.97438 * 26 16 15 28 28 H 1.08994 * 109.47079 * 60.00203 * 1 2 3 29 29 H 1.09001 * 109.46631 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47186 * 299.99422 * 1 2 3 31 31 H 1.08998 * 109.47280 * 59.99804 * 5 3 2 32 32 H 1.09007 * 109.46723 * 299.99865 * 5 3 2 33 33 H 1.08991 * 109.47161 * 35.47337 * 7 6 5 34 34 H 1.09007 * 109.47422 * 155.47795 * 7 6 5 35 35 H 0.96702 * 117.00308 * 179.97438 * 10 8 7 36 36 H 1.07998 * 125.99317 * 0.02562 * 14 13 11 37 37 H 1.09004 * 109.47136 * 29.99197 * 17 16 15 38 38 H 1.08998 * 109.47207 * 149.99663 * 17 16 15 39 39 H 0.97008 * 119.99711 * 180.02562 * 21 20 18 40 40 H 1.08997 * 109.47289 * 270.00562 * 27 26 16 41 41 H 1.09000 * 109.47040 * 30.00687 * 27 26 16 42 42 H 1.09000 * 109.46853 * 149.99954 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.1887 3.3830 -1.2683 8 6 5.5828 3.1106 -1.7718 9 8 6.3270 2.4022 -1.1361 10 8 5.9980 3.6557 -2.9260 11 6 4.1731 3.3254 1.1676 12 8 4.0948 2.7181 2.2181 13 6 4.4833 4.7667 1.1707 14 6 5.3857 5.4322 0.3110 15 7 5.3815 6.6986 0.6237 16 7 4.4962 6.8997 1.6887 17 6 4.2120 8.1833 2.3349 18 6 5.1710 8.3932 3.4783 19 1 5.9173 7.6452 3.7015 20 6 5.0950 9.5399 4.2401 21 7 4.1859 10.4506 3.9687 22 14 6.2833 9.7998 5.6578 23 1 7.4943 10.5046 5.1657 24 1 5.6277 10.6179 6.7096 25 1 6.6727 8.4838 6.2250 26 6 3.9512 5.7177 2.0181 27 6 2.9441 5.4739 3.1124 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7807 0.8892 33 1 3.4626 3.0317 -2.0012 34 1 4.0608 4.4546 -1.1149 35 1 6.9003 3.4524 -3.2080 36 1 5.9738 4.9733 -0.4699 37 1 4.3290 8.9888 1.6100 38 1 3.1899 8.1809 2.7137 39 1 4.1327 11.2576 4.5044 40 1 3.4656 5.2485 4.0426 41 1 2.3306 6.3648 3.2465 42 1 2.3076 4.6322 2.8394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606468281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:57 Heat of formation + Delta-G solvation = -122.368734 kcal Electronic energy + Delta-G solvation = -30129.951518 eV Core-core repulsion = 25691.902331 eV Total energy + Delta-G solvation = -4438.049187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35567 -40.60332 -40.28916 -38.95688 -36.71980 -36.39681 -35.35864 -33.92344 -32.19140 -31.49579 -30.28643 -28.40712 -27.78272 -26.89029 -26.21516 -23.56396 -22.55307 -22.02144 -21.10258 -19.76732 -18.67485 -18.44027 -17.93664 -17.30909 -17.25616 -16.80898 -16.53766 -16.37673 -16.23314 -15.74576 -15.35893 -14.61475 -14.55870 -14.15675 -13.92968 -13.67368 -13.52145 -13.30900 -13.25747 -12.68524 -12.51890 -12.47772 -12.33944 -12.24444 -12.09677 -11.79837 -11.71453 -11.54253 -11.11710 -11.03078 -11.01415 -10.90683 -10.79247 -10.44127 -10.33477 -9.95138 -9.66632 -9.14556 -8.71528 -8.64665 -7.99301 -6.34352 -4.42080 1.91539 1.98701 2.06284 2.09215 2.57915 2.85642 2.97489 3.19004 3.25204 3.26497 3.35224 3.55682 4.24499 4.48983 4.57404 4.66487 4.86014 4.89311 4.95070 4.98418 5.03123 5.09293 5.14341 5.20976 5.27622 5.44188 5.60316 5.82265 5.99755 6.04122 6.14518 6.24858 6.34055 6.40242 6.71828 6.87039 7.04076 7.15815 7.52852 7.54420 7.64300 7.73469 7.76175 8.21252 8.31465 8.63575 9.25095 10.73827 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.003212 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.926640 B = 8714.392539 C = 9916.466388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.361 6.361 3 C 0.441 3.559 4 O -0.492 6.492 5 C 0.129 3.871 6 N -0.587 5.587 7 C 0.117 3.883 8 C 0.454 3.546 9 O -0.499 6.499 10 O -0.513 6.513 11 C 0.622 3.378 12 O -0.528 6.528 13 C -0.331 4.331 14 C 0.052 3.948 15 N -0.286 5.286 16 N -0.309 5.309 17 C 0.251 3.749 18 C -0.541 4.541 19 H 0.066 0.934 20 C 0.068 3.932 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.271 1.271 26 C 0.163 3.837 27 C -0.089 4.089 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.141 0.859 35 H 0.412 0.588 36 H 0.166 0.834 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.269 0.731 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 -18.464 -13.136 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.281 3.719 4 O -0.378 6.378 5 C 0.005 3.995 6 N -0.321 5.321 7 C -0.008 4.008 8 C 0.293 3.707 9 O -0.386 6.386 10 O -0.325 6.325 11 C 0.414 3.586 12 O -0.403 6.403 13 C -0.347 4.347 14 C -0.134 4.134 15 N -0.107 5.107 16 N -0.086 5.086 17 C 0.134 3.866 18 C -0.579 4.579 19 H 0.084 0.916 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.195 1.195 26 C 0.026 3.974 27 C -0.147 4.147 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.152 0.848 33 H 0.137 0.863 34 H 0.158 0.842 35 H 0.272 0.728 36 H 0.183 0.817 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.145 -17.056 -12.386 21.698 hybrid contribution 0.829 -0.601 0.559 1.167 sum -4.316 -17.658 -11.827 21.686 Atomic orbital electron populations 1.23263 0.76189 1.03618 1.02681 1.86489 1.23562 1.33346 1.84290 1.24511 0.92817 0.81709 0.72840 1.90710 1.66788 1.36221 1.44065 1.20792 0.86749 0.84307 1.07689 1.47029 1.68563 1.10865 1.05626 1.21138 0.90256 1.02604 0.86850 1.24236 0.91235 0.76790 0.78399 1.90777 1.55949 1.35445 1.56436 1.84536 1.38327 1.70152 1.39503 1.17440 0.73521 0.85769 0.81912 1.90743 1.50936 1.67918 1.30673 1.19459 1.13723 0.93066 1.08412 1.23607 0.98889 0.91472 0.99430 1.77158 1.11939 1.17079 1.04491 1.49364 1.27759 1.08714 1.22811 1.19890 0.98059 0.75651 0.92984 1.21258 1.17407 1.05649 1.13609 0.91580 1.24914 0.95801 0.95100 0.97777 1.69914 1.33467 1.09243 1.40086 0.86320 0.80611 0.78539 0.81065 1.20240 1.20784 1.19534 1.21318 0.95351 0.85763 0.94930 1.20462 0.96028 1.02761 0.95428 0.91916 0.88103 0.91761 0.86284 0.84849 0.86262 0.84168 0.72837 0.81726 0.92361 0.92454 0.92101 0.89277 0.90346 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.59 10.57 -39.25 -0.41 -4.00 16 3 C 0.44 5.15 8.02 36.00 0.29 5.44 16 4 O -0.49 -7.21 16.18 -18.76 -0.30 -7.52 16 5 C 0.13 1.38 6.03 -5.20 -0.03 1.35 16 6 N -0.59 -7.76 1.46 -177.71 -0.26 -8.02 16 7 C 0.12 1.23 5.54 -5.19 -0.03 1.20 16 8 C 0.45 4.70 6.31 36.01 0.23 4.93 16 9 O -0.50 -6.70 17.16 -18.75 -0.32 -7.02 16 10 O -0.51 -3.93 13.42 -39.24 -0.53 -4.46 16 11 C 0.62 10.79 7.25 -12.52 -0.09 10.70 16 12 O -0.53 -10.39 16.20 5.28 0.09 -10.30 16 13 C -0.33 -6.22 5.20 -105.07 -0.55 -6.76 16 14 C 0.05 0.95 9.63 -16.98 -0.16 0.79 16 15 N -0.29 -6.17 12.50 30.86 0.39 -5.78 16 16 N -0.31 -6.95 3.56 -57.78 -0.21 -7.15 16 17 C 0.25 6.18 5.97 -5.20 -0.03 6.15 16 18 C -0.54 -14.59 9.39 -34.44 -0.32 -14.91 16 19 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 20 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 21 N -0.89 -24.49 13.29 55.43 0.74 -23.76 16 22 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 26 C 0.16 3.33 7.00 -81.60 -0.57 2.75 16 27 C -0.09 -1.59 9.64 36.01 0.35 -1.24 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.12 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.13 1.47 7.35 -51.93 -0.38 1.09 16 33 H 0.12 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.14 1.63 5.26 -51.93 -0.27 1.36 16 35 H 0.41 1.55 9.10 45.56 0.41 1.97 16 36 H 0.17 2.50 5.49 -52.49 -0.29 2.21 16 37 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.06 1.39 7.02 -51.93 -0.36 1.03 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.08 1.35 7.05 -51.93 -0.37 0.98 16 42 H 0.08 1.30 7.85 -51.93 -0.41 0.90 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -35.47 373.31 -4.34 -39.80 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.16 Total: 3.22 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 0.05 Total: 13.45 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.66 Total: -44.72 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -1.48 Total: -33.30 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.47 -4.34 -39.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606468281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.565 kcal (2) G-P(sol) polarization free energy of solvation -35.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds