Wall clock time and date at job start Tue Mar 31 2020 22:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99820 * 2 1 4 4 O 1.20834 * 119.99974 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00144 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47277 * 180.02562 * 5 3 2 7 7 C 1.46504 * 119.99552 * 269.99905 * 6 5 3 8 8 C 1.50700 * 109.46932 * 275.47461 * 7 6 5 9 9 O 1.20824 * 119.99961 * 359.97438 * 8 7 6 10 10 O 1.34225 * 120.00198 * 180.02562 * 8 7 6 11 11 C 1.34775 * 120.00534 * 89.99433 * 6 5 3 12 12 O 1.21595 * 120.00045 * 5.26580 * 11 6 5 13 13 C 1.47431 * 120.00211 * 184.99069 * 11 6 5 14 14 C 1.41289 * 126.41100 * 316.73997 * 13 11 6 15 15 N 1.30449 * 108.02113 * 179.87813 * 14 13 11 16 16 N 1.39938 * 108.89919 * 0.38932 * 15 14 13 17 17 C 1.46496 * 125.75722 * 179.75275 * 16 15 14 18 18 C 1.50700 * 109.46914 * 269.99930 * 17 16 15 19 19 H 1.07997 * 120.00183 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00061 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00064 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47028 * 89.99880 * 22 20 18 24 24 H 1.48500 * 109.47167 * 209.99527 * 22 20 18 25 25 H 1.48503 * 109.47261 * 330.00159 * 22 20 18 26 26 C 1.34263 * 108.48487 * 359.74716 * 16 15 14 27 27 C 1.50705 * 126.28642 * 179.97438 * 26 16 15 28 28 H 1.08994 * 109.47079 * 60.00203 * 1 2 3 29 29 H 1.09001 * 109.46631 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47186 * 299.99422 * 1 2 3 31 31 H 1.08998 * 109.47280 * 59.99804 * 5 3 2 32 32 H 1.09007 * 109.46723 * 299.99865 * 5 3 2 33 33 H 1.08991 * 109.47161 * 35.47337 * 7 6 5 34 34 H 1.09007 * 109.47422 * 155.47795 * 7 6 5 35 35 H 0.96702 * 117.00308 * 179.97438 * 10 8 7 36 36 H 1.07998 * 125.99317 * 0.02562 * 14 13 11 37 37 H 1.09004 * 109.47136 * 29.99197 * 17 16 15 38 38 H 1.08998 * 109.47207 * 149.99663 * 17 16 15 39 39 H 0.97008 * 119.99711 * 180.02562 * 21 20 18 40 40 H 1.08997 * 109.47289 * 270.00562 * 27 26 16 41 41 H 1.09000 * 109.47040 * 30.00687 * 27 26 16 42 42 H 1.09000 * 109.46853 * 149.99954 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.1887 3.3830 -1.2683 8 6 5.5828 3.1106 -1.7718 9 8 6.3270 2.4022 -1.1361 10 8 5.9980 3.6557 -2.9260 11 6 4.1731 3.3254 1.1676 12 8 4.0948 2.7181 2.2181 13 6 4.4833 4.7667 1.1707 14 6 5.3857 5.4322 0.3110 15 7 5.3815 6.6986 0.6237 16 7 4.4962 6.8997 1.6887 17 6 4.2120 8.1833 2.3349 18 6 5.1710 8.3932 3.4783 19 1 5.9173 7.6452 3.7015 20 6 5.0950 9.5399 4.2401 21 7 4.1859 10.4506 3.9687 22 14 6.2833 9.7998 5.6578 23 1 7.4943 10.5046 5.1657 24 1 5.6277 10.6179 6.7096 25 1 6.6727 8.4838 6.2250 26 6 3.9512 5.7177 2.0181 27 6 2.9441 5.4739 3.1124 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7807 0.8892 33 1 3.4626 3.0317 -2.0012 34 1 4.0608 4.4546 -1.1149 35 1 6.9003 3.4524 -3.2080 36 1 5.9738 4.9733 -0.4699 37 1 4.3290 8.9888 1.6100 38 1 3.1899 8.1809 2.7137 39 1 4.1327 11.2576 4.5044 40 1 3.4656 5.2485 4.0426 41 1 2.3306 6.3648 3.2465 42 1 2.3076 4.6322 2.8394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606468281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:56 Heat of formation + Delta-G solvation = -146.865728 kcal Electronic energy + Delta-G solvation = -30131.013787 eV Core-core repulsion = 25691.902331 eV Total energy + Delta-G solvation = -4439.111456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.67718 -41.72537 -41.16889 -40.15223 -37.65788 -37.20193 -36.43996 -35.81818 -33.94488 -33.00490 -31.34344 -29.47513 -29.10471 -28.39893 -27.33343 -25.41930 -23.70792 -22.98352 -22.31363 -21.15351 -19.98927 -19.29559 -18.89029 -18.80068 -18.49462 -18.19965 -17.50446 -17.35572 -17.10317 -16.93280 -16.75624 -16.27004 -16.13271 -15.43737 -15.15654 -14.87737 -14.52162 -14.49064 -14.29651 -14.12475 -13.90790 -13.77871 -13.67587 -13.43614 -13.14123 -13.12870 -12.96303 -12.93051 -12.72470 -12.50104 -12.32455 -11.97360 -11.96497 -11.86653 -11.79603 -11.70418 -11.10808 -10.76687 -10.35408 -10.19628 -9.57427 -8.38938 -6.54732 0.61187 1.06995 1.09077 1.15828 1.18130 1.36591 1.37736 1.48032 1.62786 1.80264 2.07262 2.31825 2.39186 2.93534 3.37750 3.60645 3.74238 3.81318 3.87451 4.05460 4.12895 4.24888 4.27240 4.33459 4.34683 4.36931 4.42477 4.53581 4.73260 4.74830 4.84888 4.90433 5.06545 5.07871 5.32670 5.45892 5.49722 5.59930 5.73695 5.94472 5.97709 6.53198 6.65491 6.70537 6.91999 6.99992 7.16314 8.68938 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.003212 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.926640 B = 8714.392539 C = 9916.466388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.446 3.554 4 O -0.527 6.527 5 C 0.127 3.873 6 N -0.581 5.581 7 C 0.110 3.890 8 C 0.465 3.535 9 O -0.531 6.531 10 O -0.504 6.504 11 C 0.621 3.379 12 O -0.558 6.558 13 C -0.330 4.330 14 C 0.074 3.926 15 N -0.320 5.320 16 N -0.330 5.330 17 C 0.267 3.733 18 C -0.558 4.558 19 H 0.049 0.951 20 C 0.027 3.973 21 N -0.914 5.914 22 Si 0.969 3.031 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.147 3.853 27 C -0.083 4.083 28 H 0.066 0.934 29 H 0.134 0.866 30 H 0.053 0.947 31 H 0.160 0.840 32 H 0.130 0.870 33 H 0.156 0.844 34 H 0.130 0.870 35 H 0.432 0.568 36 H 0.196 0.804 37 H 0.036 0.964 38 H 0.056 0.944 39 H 0.275 0.725 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.814 -20.137 -14.248 25.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.288 3.712 4 O -0.416 6.416 5 C 0.004 3.996 6 N -0.313 5.313 7 C -0.014 4.014 8 C 0.306 3.694 9 O -0.421 6.421 10 O -0.317 6.317 11 C 0.412 3.588 12 O -0.436 6.436 13 C -0.345 4.345 14 C -0.113 4.113 15 N -0.140 5.140 16 N -0.108 5.108 17 C 0.149 3.851 18 C -0.596 4.596 19 H 0.068 0.932 20 C -0.175 4.175 21 N -0.552 5.552 22 Si 0.793 3.207 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.197 1.197 26 C 0.012 3.988 27 C -0.141 4.141 28 H 0.085 0.915 29 H 0.152 0.848 30 H 0.072 0.928 31 H 0.177 0.823 32 H 0.148 0.852 33 H 0.174 0.826 34 H 0.147 0.853 35 H 0.295 0.705 36 H 0.212 0.788 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.895 -18.760 -13.567 23.663 hybrid contribution 0.714 -0.202 0.746 1.053 sum -4.180 -18.962 -12.820 23.268 Atomic orbital electron populations 1.23541 0.74706 1.05727 1.02393 1.86483 1.24984 1.32255 1.83698 1.24617 0.93078 0.81651 0.71811 1.90704 1.67572 1.37360 1.45931 1.21065 0.86314 0.82794 1.09470 1.46923 1.67228 1.11869 1.05305 1.21344 0.91733 1.01893 0.86444 1.23981 0.90631 0.76137 0.78601 1.90786 1.56689 1.37039 1.57544 1.84491 1.39943 1.69284 1.38031 1.17260 0.73606 0.85142 0.82820 1.90724 1.52541 1.68280 1.32099 1.19731 1.13125 0.93977 1.07680 1.24017 0.97850 0.90343 0.99071 1.77104 1.12919 1.18914 1.05108 1.49106 1.29257 1.08538 1.23883 1.19440 0.97447 0.76386 0.91848 1.21389 1.17710 1.05702 1.14788 0.93228 1.25669 0.97215 0.94662 0.99923 1.69984 1.34519 1.09641 1.41050 0.85390 0.78651 0.78364 0.78330 1.19835 1.19461 1.19671 1.21795 0.95802 0.85512 0.95721 1.20460 0.95685 1.03260 0.94658 0.91518 0.84833 0.92799 0.82283 0.85204 0.82638 0.85270 0.70541 0.78769 0.94556 0.92673 0.91602 0.89609 0.90098 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.36 -6.40 10.57 -51.40 -0.54 -6.94 16 3 C 0.45 9.67 8.02 71.23 0.57 10.24 16 4 O -0.53 -14.90 16.18 21.94 0.35 -14.54 16 5 C 0.13 2.43 6.03 85.63 0.52 2.95 16 6 N -0.58 -14.36 1.46 -834.40 -1.22 -15.58 16 7 C 0.11 2.04 5.54 85.63 0.47 2.52 16 8 C 0.47 8.34 6.31 71.24 0.45 8.79 16 9 O -0.53 -12.98 17.16 21.97 0.38 -12.60 16 10 O -0.50 -6.08 13.42 -51.37 -0.69 -6.77 16 11 C 0.62 21.14 7.25 86.67 0.63 21.77 16 12 O -0.56 -21.91 16.20 -4.02 -0.07 -21.98 16 13 C -0.33 -12.32 5.20 -20.15 -0.10 -12.43 16 14 C 0.07 2.63 9.63 85.65 0.83 3.46 16 15 N -0.32 -13.96 12.50 -56.28 -0.70 -14.66 16 16 N -0.33 -15.24 3.56 -336.70 -1.20 -16.44 16 17 C 0.27 13.63 5.97 85.63 0.51 14.14 16 18 C -0.56 -30.81 9.39 25.60 0.24 -30.57 16 19 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 20 C 0.03 1.46 5.46 84.65 0.46 1.92 16 21 N -0.91 -50.77 13.29 21.45 0.28 -50.48 16 22 Si 0.97 42.98 29.54 68.60 2.03 45.00 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 C 0.15 6.10 7.00 42.14 0.30 6.40 16 27 C -0.08 -3.02 9.64 71.24 0.69 -2.34 16 28 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 29 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 31 H 0.16 1.74 8.07 -2.39 -0.02 1.72 16 32 H 0.13 2.67 7.35 -2.38 -0.02 2.66 16 33 H 0.16 1.76 8.11 -2.39 -0.02 1.74 16 34 H 0.13 2.77 5.26 -2.38 -0.01 2.76 16 35 H 0.43 1.82 9.10 -74.06 -0.67 1.15 16 36 H 0.20 5.56 5.49 -2.91 -0.02 5.54 16 37 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 2.79 7.02 -2.39 -0.02 2.77 16 39 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 40 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.08 2.87 7.05 -2.39 -0.02 2.85 16 42 H 0.09 3.02 7.85 -2.39 -0.02 3.00 16 Total: -1.00 -77.50 373.31 5.80 -71.70 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.42 Total: 14.88 kcal Atomic # 6 Polarization: 21.67 SS G_CDS: 6.75 Total: 28.42 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -2.83 Total: -97.16 kcal Atomic # 8 Polarization: -62.27 SS G_CDS: -0.57 Total: -62.84 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -77.50 5.80 -71.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606468281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.167 kcal (2) G-P(sol) polarization free energy of solvation -77.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds