Wall clock time and date at job start Tue Mar 31 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99627 * 2 1 4 4 C 1.52997 * 109.47110 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.46908 * 65.00034 * 4 3 2 6 6 C 1.46912 * 110.99797 * 193.95515 * 5 4 3 7 7 C 1.50696 * 109.46979 * 75.82845 * 6 5 4 8 8 H 1.08004 * 120.00571 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00022 * 180.02562 * 7 6 5 10 10 N 1.31523 * 119.99862 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00258 * 179.97438 * 9 7 6 12 12 H 1.48491 * 109.47185 * 59.99831 * 11 9 7 13 13 H 1.48504 * 109.47102 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47060 * 299.99663 * 11 9 7 15 15 C 1.39025 * 111.00196 * 70.00523 * 5 4 3 16 16 N 1.32346 * 119.64629 * 53.76126 * 15 5 4 17 17 C 1.31884 * 121.96204 * 179.97438 * 16 15 5 18 18 C 1.50699 * 119.49778 * 180.02562 * 17 16 15 19 19 C 1.37988 * 121.00048 * 0.02562 * 17 16 15 20 20 C 1.40015 * 119.17195 * 359.97438 * 19 17 16 21 21 C 1.48061 * 120.88736 * 180.02562 * 20 19 17 22 22 O 1.21429 * 119.99920 * 180.02562 * 21 20 19 23 23 O 1.34673 * 120.00476 * 359.97438 * 21 20 19 24 24 C 1.39086 * 119.64035 * 233.48918 * 15 5 4 25 25 N 1.48022 * 120.53493 * 359.97438 * 24 15 5 26 26 O 1.21801 * 120.00099 * 93.93801 * 25 24 15 27 27 O 1.21802 * 119.99709 * 273.93465 * 25 24 15 28 28 H 1.09005 * 109.46951 * 60.00392 * 1 2 3 29 29 H 1.09006 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47401 * 299.99891 * 1 2 3 31 31 H 1.09004 * 109.47153 * 59.99916 * 3 2 1 32 32 H 1.09004 * 109.47315 * 299.99813 * 3 2 1 33 33 H 1.08997 * 109.47562 * 185.00235 * 4 3 2 34 34 H 1.09001 * 109.47264 * 305.00038 * 4 3 2 35 35 H 1.09003 * 109.46697 * 195.82695 * 6 5 4 36 36 H 1.08996 * 109.47066 * 315.82367 * 6 5 4 37 37 H 0.97001 * 119.99983 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.46508 * 90.00588 * 18 17 16 39 39 H 1.08998 * 109.46905 * 210.00013 * 18 17 16 40 40 H 1.08994 * 109.47280 * 330.00280 * 18 17 16 41 41 H 1.08003 * 120.41224 * 180.02562 * 19 17 16 42 42 H 0.96696 * 117.00611 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9778 0.5624 -1.2543 6 6 5.3783 0.1285 -1.1616 7 6 5.4605 -1.1311 -0.3385 8 1 4.5623 -1.5658 0.0749 9 6 6.6824 -1.7282 -0.1122 10 7 7.7763 -1.1987 -0.6151 11 14 6.7844 -3.2893 0.9087 12 1 5.9778 -4.3562 0.2637 13 1 8.2003 -3.7272 1.0033 14 1 6.2565 -3.0250 2.2713 15 6 3.7933 1.4238 -2.3298 16 7 4.3041 2.6440 -2.2864 17 6 4.1573 3.4980 -3.2805 18 6 4.7631 4.8737 -3.1725 19 6 3.4576 3.1511 -4.4181 20 6 2.8981 1.8710 -4.5114 21 6 2.1403 1.4585 -5.7147 22 8 1.6615 0.3444 -5.7783 23 8 1.9812 2.3192 -6.7381 24 6 3.0787 0.9921 -3.4422 25 7 2.5147 -0.3757 -3.4893 26 8 1.3649 -0.5727 -3.1391 27 8 3.2005 -1.3041 -3.8784 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.9784 2.1766 0.0902 34 1 3.8508 0.5686 0.8427 35 1 5.7656 -0.0652 -2.1620 36 1 5.9706 0.9114 -0.6880 37 1 8.6360 -1.6186 -0.4556 38 1 5.7763 4.8570 -3.5739 39 1 4.1593 5.5821 -3.7397 40 1 4.7917 5.1769 -2.1260 41 1 3.3436 3.8579 -5.2267 42 1 1.4786 2.0049 -7.5021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606885175.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:00 Heat of formation + Delta-G solvation = -101.651578 kcal Electronic energy + Delta-G solvation = -31423.180646 eV Core-core repulsion = 26986.029822 eV Total energy + Delta-G solvation = -4437.150823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.39497 -42.05371 -41.32188 -39.25613 -37.95321 -37.53959 -37.44730 -34.99253 -34.92087 -33.18106 -31.20553 -30.19419 -28.76160 -27.14384 -26.79296 -26.28167 -24.59928 -24.13052 -22.73049 -22.07348 -20.49112 -19.77503 -19.69654 -18.83410 -18.74584 -18.30885 -17.64624 -17.48885 -17.25063 -17.14452 -16.57710 -16.39484 -15.96652 -15.77867 -15.63750 -15.14826 -14.96249 -14.53729 -14.18419 -13.87995 -13.64082 -13.55737 -13.18944 -13.02334 -12.98652 -12.80660 -12.71587 -12.68599 -12.49719 -12.47553 -12.33834 -12.15125 -12.11162 -11.89692 -11.78561 -11.58187 -11.24818 -10.69197 -10.56603 -10.48536 -9.74306 -8.28255 -6.38266 -1.27915 -0.75630 -0.45575 0.28550 0.96614 1.25075 1.37838 1.42922 1.50514 1.96311 2.24239 2.43243 2.80601 2.93688 3.04816 3.10760 3.24076 3.39025 3.71761 4.00732 4.01436 4.09691 4.24998 4.30457 4.45632 4.54688 4.59150 4.66614 4.74280 4.76279 4.80438 4.87555 4.90593 4.96576 5.11548 5.21782 5.27288 5.53362 5.80607 5.85494 6.21559 6.28383 6.38503 6.50825 6.51682 6.72547 7.30571 8.82869 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010382 B = 0.004707 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.293953 B = 5947.711220 C = 6298.639993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.401 6.401 3 C 0.076 3.924 4 C 0.065 3.935 5 N -0.505 5.505 6 C 0.235 3.765 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.011 3.989 10 N -0.929 5.929 11 Si 0.970 3.030 12 H -0.277 1.277 13 H -0.276 1.276 14 H -0.263 1.263 15 C 0.354 3.646 16 N -0.489 5.489 17 C 0.172 3.828 18 C -0.106 4.106 19 C -0.088 4.088 20 C -0.046 4.046 21 C 0.534 3.466 22 O -0.528 6.528 23 O -0.470 6.470 24 C -0.052 4.052 25 N 0.058 4.942 26 O -0.107 6.107 27 O -0.204 6.204 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.031 0.969 33 H 0.076 0.924 34 H 0.083 0.917 35 H -0.012 1.012 36 H -0.005 1.005 37 H 0.268 0.732 38 H 0.104 0.896 39 H 0.130 0.870 40 H 0.085 0.915 41 H 0.225 0.775 42 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.136 18.796 -8.495 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.320 6.320 3 C -0.001 4.001 4 C -0.061 4.061 5 N -0.229 5.229 6 C 0.111 3.889 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.188 4.188 10 N -0.568 5.568 11 Si 0.794 3.206 12 H -0.202 1.202 13 H -0.201 1.201 14 H -0.187 1.187 15 C 0.126 3.874 16 N -0.205 5.205 17 C 0.031 3.969 18 C -0.162 4.162 19 C -0.107 4.107 20 C -0.056 4.056 21 C 0.376 3.624 22 O -0.418 6.418 23 O -0.285 6.285 24 C -0.137 4.137 25 N 0.588 4.412 26 O -0.344 6.344 27 O -0.412 6.412 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.007 0.993 36 H 0.013 0.987 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.148 0.852 40 H 0.104 0.896 41 H 0.242 0.758 42 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges -11.157 18.902 -7.555 23.213 hybrid contribution -0.238 -1.458 -0.596 1.593 sum -11.395 17.444 -8.152 22.374 Atomic orbital electron populations 1.22823 0.79979 1.03330 1.00257 1.88065 1.21038 1.27576 1.95315 1.22520 0.92106 0.85260 1.00229 1.22229 0.94355 0.98928 0.90586 1.60329 1.25443 1.34176 1.02974 1.19295 0.79502 0.95043 0.95031 1.21224 0.93374 1.09445 1.32258 0.92426 1.25817 0.94872 1.00973 0.97097 1.70054 0.98861 1.41813 1.46117 0.85430 0.77221 0.78785 0.79174 1.20198 1.20066 1.18733 1.19712 0.88238 0.88818 0.90631 1.68142 1.18236 1.02261 1.31859 1.22611 0.89979 0.97286 0.87035 1.21125 1.02582 0.86613 1.05902 1.22893 0.94015 0.93242 1.00584 1.19330 1.00267 0.95303 0.90738 1.20248 0.76743 0.82197 0.83195 1.91064 1.46950 1.22867 1.80925 1.84396 1.71104 1.44435 1.28568 1.21967 1.07433 0.84539 0.99810 1.42872 0.99731 1.02272 0.96341 1.94391 1.02633 1.90473 1.46942 1.94571 1.59899 1.35963 1.50750 0.94175 0.89529 0.92342 0.89728 0.95057 0.90616 0.89877 0.99343 0.98686 0.92355 0.87772 0.85188 0.89631 0.75838 0.68857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 11.01 113.37 1.25 2.17 16 2 O -0.40 -15.50 10.65 -148.98 -1.59 -17.09 16 3 C 0.08 2.55 6.06 71.98 0.44 2.99 16 4 C 0.07 2.62 5.10 86.30 0.44 3.06 16 5 N -0.51 -23.92 4.05 -706.25 -2.86 -26.78 16 6 C 0.23 13.23 4.65 85.55 0.40 13.62 16 7 C -0.52 -31.72 8.54 25.60 0.22 -31.50 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.01 0.68 5.46 84.65 0.46 1.14 16 10 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 11 Si 0.97 46.92 29.54 68.60 2.03 48.95 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 14 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 15 C 0.35 14.36 4.21 133.06 0.56 14.93 16 16 N -0.49 -16.09 9.30 -181.48 -1.69 -17.78 16 17 C 0.17 3.65 6.77 42.49 0.29 3.93 16 18 C -0.11 -1.09 10.16 71.24 0.72 -0.37 16 19 C -0.09 -1.57 9.32 22.64 0.21 -1.36 16 20 C -0.05 -1.32 5.90 -19.92 -0.12 -1.44 16 21 C 0.53 13.75 8.30 70.43 0.58 14.33 16 22 O -0.53 -18.67 15.48 24.93 0.39 -18.29 16 23 O -0.47 -5.90 12.78 -55.82 -0.71 -6.62 16 24 C -0.05 -2.06 6.22 36.90 0.23 -1.83 16 25 N 0.06 2.74 2.34 -45.21 -0.11 2.63 16 26 O -0.11 -4.94 18.78 22.95 0.43 -4.51 16 27 O -0.20 -10.90 19.20 19.78 0.38 -10.52 16 28 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.03 1.03 7.39 -2.39 -0.02 1.02 16 33 H 0.08 2.77 7.42 -2.39 -0.02 2.75 16 34 H 0.08 3.69 7.37 -2.39 -0.02 3.67 16 35 H -0.01 -0.73 7.91 -2.39 -0.02 -0.75 16 36 H 0.00 -0.27 8.00 -2.39 -0.02 -0.29 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.13 0.24 8.07 -2.39 -0.02 0.22 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.22 1.44 7.71 -2.91 -0.02 1.42 16 42 H 0.45 1.49 9.11 -74.06 -0.67 0.81 16 Total: -1.00 -90.05 376.36 2.64 -87.41 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: 0.40 Total: -0.20 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 5.68 Total: 19.68 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -4.37 Total: -98.80 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -1.10 Total: -57.03 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -90.05 2.64 -87.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606885175.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.241 kcal (2) G-P(sol) polarization free energy of solvation -90.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds