Wall clock time and date at job start Tue Mar 31 2020 22:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33619 * 125.81229 * 2 1 4 4 C 1.34217 * 110.92491 * 180.15900 * 3 2 1 5 5 C 1.50703 * 125.42945 * 179.87495 * 4 3 2 6 6 N 1.46499 * 109.47219 * 269.69758 * 5 4 3 7 7 C 1.46499 * 120.00136 * 269.99493 * 6 5 4 8 8 C 1.34784 * 119.99971 * 89.99688 * 6 5 4 9 9 O 1.21583 * 119.99855 * 359.72712 * 8 6 5 10 10 N 1.34771 * 119.99547 * 179.97438 * 8 6 5 11 11 C 1.46506 * 119.99515 * 179.97438 * 10 8 6 12 12 C 1.50699 * 109.46931 * 180.02562 * 11 10 8 13 13 O 1.21290 * 120.00342 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00033 * 180.02562 * 12 11 10 15 15 C 1.37097 * 119.99940 * 179.97438 * 14 12 11 16 16 H 1.07997 * 120.00464 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99682 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00493 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47266 * 59.99963 * 19 17 15 21 21 H 1.48506 * 109.47324 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46921 * 299.99770 * 19 17 15 23 23 C 1.34158 * 109.14687 * 359.61510 * 4 3 2 24 24 C 1.36501 * 125.80174 * 179.73871 * 2 1 3 25 25 C 1.47232 * 127.20656 * 359.97294 * 24 2 1 26 26 O 1.21533 * 119.99432 * 0.02562 * 25 24 2 27 27 O 1.34773 * 120.00018 * 180.02562 * 25 24 2 28 28 H 1.09005 * 109.46818 * 270.26153 * 1 2 3 29 29 H 1.09003 * 109.46931 * 30.25636 * 1 2 3 30 30 H 1.08997 * 109.47352 * 150.26508 * 1 2 3 31 31 H 1.08998 * 109.47074 * 149.69368 * 5 4 3 32 32 H 1.09008 * 109.46468 * 29.69339 * 5 4 3 33 33 H 1.08996 * 109.47008 * 270.00543 * 7 6 5 34 34 H 1.08997 * 109.46865 * 30.00228 * 7 6 5 35 35 H 1.08998 * 109.47058 * 149.99741 * 7 6 5 36 36 H 0.96999 * 120.00409 * 0.02562 * 10 8 6 37 37 H 1.08996 * 109.47564 * 300.00635 * 11 10 8 38 38 H 1.09000 * 109.46872 * 60.00432 * 11 10 8 39 39 H 0.96996 * 119.99850 * 359.97438 * 14 12 11 40 40 H 0.97002 * 120.00301 * 179.97438 * 18 17 15 41 41 H 1.07998 * 127.02911 * 180.25175 * 23 4 3 42 42 H 0.96700 * 116.99695 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0836 0.0000 4 6 3.5860 0.7387 -0.0035 5 6 4.7458 1.7010 -0.0072 6 7 5.1224 2.0066 -1.3896 7 6 6.1209 1.1831 -2.0759 8 6 4.5502 3.0454 -2.0300 9 8 3.7179 3.7259 -1.4621 10 7 4.8971 3.3268 -3.3016 11 6 4.2748 4.4556 -3.9979 12 6 4.8316 4.5527 -5.3949 13 8 5.6665 3.7577 -5.7717 14 7 4.4026 5.5238 -6.2253 15 6 4.9096 5.6125 -7.4960 16 1 5.6524 4.9040 -7.8318 17 6 4.4669 6.6132 -8.3522 18 7 3.5620 7.4744 -7.9443 19 14 5.1572 6.7337 -10.0839 20 1 4.8678 5.4772 -10.8207 21 1 4.5268 7.8783 -10.7896 22 1 6.6260 6.9418 -10.0179 23 6 3.6857 -0.5991 0.0026 24 6 2.3055 -1.1071 0.0050 25 6 1.8753 -2.5151 0.0120 26 8 0.6911 -2.7885 0.0133 27 8 2.7946 -3.5006 0.0170 28 1 -0.3633 0.0047 1.0277 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3634 -0.8923 -0.5097 31 1 5.5934 1.2505 0.5092 32 1 4.4567 2.6203 0.5023 33 1 7.1139 1.5991 -1.9058 34 1 6.0818 0.1655 -1.6872 35 1 5.9098 1.1719 -3.1452 36 1 5.5582 2.7815 -3.7560 37 1 3.1967 4.3028 -4.0467 38 1 4.4869 5.3777 -3.4569 39 1 3.7352 6.1598 -5.9239 40 1 3.2533 8.1732 -8.5420 41 1 4.5938 -1.1836 0.0057 42 1 2.4639 -4.4093 0.0211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608043977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:07 Heat of formation + Delta-G solvation = -133.313220 kcal Electronic energy + Delta-G solvation = -28624.394484 eV Core-core repulsion = 24185.870709 eV Total energy + Delta-G solvation = -4438.523775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.93948 -40.19547 -40.04512 -38.27144 -36.40949 -35.85460 -34.53338 -33.77354 -33.39200 -32.44272 -31.38523 -29.47964 -27.62250 -26.91044 -25.36305 -24.41961 -23.80869 -21.98057 -20.13948 -19.71864 -19.58915 -18.39029 -18.36904 -17.82576 -17.32927 -16.93456 -16.18704 -15.93965 -15.70293 -15.59370 -15.53877 -14.71498 -14.65758 -14.40955 -14.06509 -13.91755 -13.64126 -13.45746 -13.35196 -13.22872 -13.18046 -12.96823 -12.73960 -12.38517 -12.08596 -11.97200 -11.89942 -11.78084 -11.63769 -11.11338 -10.93275 -10.51652 -10.32728 -10.18883 -10.06134 -9.63730 -9.09213 -8.84694 -8.64321 -8.61824 -8.11178 -6.52162 -3.94376 0.85454 1.52314 2.33370 2.66060 2.81486 2.84556 3.12876 3.20926 3.24653 3.30099 3.73592 3.97772 4.10703 4.15345 4.39307 4.75681 4.80200 4.86276 4.91693 4.96606 5.16366 5.16511 5.17730 5.23812 5.35919 5.38035 5.54405 5.59786 5.77418 5.87073 5.97804 5.98534 6.06132 6.15682 6.25254 6.70382 6.75495 6.89933 7.44908 7.60243 7.91031 8.06402 8.43961 8.68704 9.03489 9.38287 9.86072 10.64605 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.002084 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.544388 B =13430.740421 C =13712.049440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.103 3.897 3 O -0.150 6.150 4 C -0.024 4.024 5 C 0.212 3.788 6 N -0.633 5.633 7 C 0.076 3.924 8 C 0.705 3.295 9 O -0.587 6.587 10 N -0.721 5.721 11 C 0.127 3.873 12 C 0.428 3.572 13 O -0.599 6.599 14 N -0.548 5.548 15 C -0.306 4.306 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.894 5.894 19 Si 0.934 3.066 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.155 4.155 24 C -0.247 4.247 25 C 0.562 3.438 26 O -0.521 6.521 27 O -0.510 6.510 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.408 0.592 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.396 0.604 40 H 0.275 0.725 41 H 0.162 0.838 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 -16.474 18.451 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.045 6.045 4 C -0.074 4.074 5 C 0.088 3.912 6 N -0.371 5.371 7 C -0.068 4.068 8 C 0.406 3.594 9 O -0.465 6.465 10 N -0.380 5.380 11 C -0.002 4.002 12 C 0.214 3.786 13 O -0.486 6.486 14 N -0.183 5.183 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.175 4.175 24 C -0.249 4.249 25 C 0.408 3.592 26 O -0.412 6.412 27 O -0.321 6.321 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.247 0.753 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.180 0.820 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -0.651 -15.638 18.444 24.190 hybrid contribution 0.102 -0.640 -1.022 1.210 sum -0.549 -16.277 17.422 23.849 Atomic orbital electron populations 1.20715 0.83537 1.05606 1.04690 1.22929 0.94255 0.83104 0.94819 1.83891 1.16775 1.33982 1.69855 1.22975 0.82992 0.95037 1.06369 1.19686 0.90655 0.97761 0.83067 1.47020 1.44497 1.31556 1.14002 1.21822 0.91488 0.95293 0.98159 1.15814 0.81255 0.80769 0.81532 1.90922 1.36091 1.52462 1.67015 1.44932 1.46743 1.34303 1.12019 1.20811 0.97846 0.89361 0.92132 1.19739 0.86973 0.85054 0.86833 1.90483 1.36816 1.44205 1.77071 1.41780 1.37473 1.26664 1.12372 1.19673 1.22134 1.13856 0.87842 0.87733 1.25328 0.96342 0.95498 1.00534 1.69605 1.29333 1.16839 1.37661 0.85871 0.79061 0.77884 0.81132 1.19779 1.20846 1.19772 1.22603 0.96531 0.93001 1.05396 1.20024 0.94199 0.90286 1.20435 1.19612 0.82881 0.85156 0.71569 1.90878 1.18282 1.84452 1.47619 1.84578 1.42007 1.19615 1.85924 0.88845 0.89513 0.87420 0.86784 0.87589 0.91987 0.90785 0.90724 0.75288 0.90028 0.89893 0.76996 0.91512 0.82033 0.72830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 9.89 36.01 0.36 -0.45 16 2 C 0.10 1.20 7.38 -34.93 -0.26 0.94 16 3 O -0.15 -1.98 10.52 7.73 0.08 -1.90 16 4 C -0.02 -0.26 6.86 -35.74 -0.25 -0.51 16 5 C 0.21 2.05 5.92 -5.19 -0.03 2.02 16 6 N -0.63 -7.52 2.86 -188.74 -0.54 -8.05 16 7 C 0.08 0.67 10.20 59.85 0.61 1.28 16 8 C 0.71 11.46 8.28 -86.92 -0.72 10.74 16 9 O -0.59 -11.31 15.92 5.29 0.08 -11.22 16 10 N -0.72 -12.23 5.39 -66.41 -0.36 -12.59 16 11 C 0.13 2.37 6.15 -5.19 -0.03 2.34 16 12 C 0.43 9.80 7.85 -10.99 -0.09 9.71 16 13 O -0.60 -15.17 15.24 5.55 0.08 -15.09 16 14 N -0.55 -13.56 5.29 -10.97 -0.06 -13.62 16 15 C -0.31 -8.27 9.68 -14.93 -0.14 -8.41 16 16 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 18 N -0.89 -23.82 13.05 55.50 0.72 -23.10 16 19 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 C -0.16 -1.54 10.93 -37.44 -0.41 -1.95 16 24 C -0.25 -2.79 6.32 -103.29 -0.65 -3.45 16 25 C 0.56 6.00 8.33 34.38 0.29 6.29 16 26 O -0.52 -6.47 15.63 -19.29 -0.30 -6.77 16 27 O -0.51 -3.93 13.34 -40.69 -0.54 -4.47 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.11 1.01 6.49 -51.93 -0.34 0.68 16 31 H 0.11 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.11 1.14 7.42 -51.92 -0.39 0.75 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 35 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 36 H 0.41 6.71 5.17 -40.82 -0.21 6.50 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 42 H 0.41 1.24 9.11 45.56 0.42 1.65 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -35.61 374.25 -5.69 -41.30 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -4.06 Total: 15.32 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: -1.42 Total: 19.12 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.23 Total: -57.36 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.59 Total: -39.45 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.61 -5.69 -41.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608043977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.014 kcal (2) G-P(sol) polarization free energy of solvation -35.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds