Wall clock time and date at job start Tue Mar 31 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33619 * 125.81229 * 2 1 4 4 C 1.34217 * 110.92491 * 180.15900 * 3 2 1 5 5 C 1.50703 * 125.42945 * 179.87495 * 4 3 2 6 6 N 1.46499 * 109.47219 * 269.69758 * 5 4 3 7 7 C 1.46499 * 120.00136 * 269.99493 * 6 5 4 8 8 C 1.34784 * 119.99971 * 89.99688 * 6 5 4 9 9 O 1.21583 * 119.99855 * 359.72712 * 8 6 5 10 10 N 1.34771 * 119.99547 * 179.97438 * 8 6 5 11 11 C 1.46506 * 119.99515 * 179.97438 * 10 8 6 12 12 C 1.50699 * 109.46931 * 180.02562 * 11 10 8 13 13 O 1.21290 * 120.00342 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00033 * 180.02562 * 12 11 10 15 15 C 1.37097 * 119.99940 * 179.97438 * 14 12 11 16 16 H 1.07997 * 120.00464 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99682 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00493 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47266 * 59.99963 * 19 17 15 21 21 H 1.48506 * 109.47324 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46921 * 299.99770 * 19 17 15 23 23 C 1.34158 * 109.14687 * 359.61510 * 4 3 2 24 24 C 1.36501 * 125.80174 * 179.73871 * 2 1 3 25 25 C 1.47232 * 127.20656 * 359.97294 * 24 2 1 26 26 O 1.21533 * 119.99432 * 0.02562 * 25 24 2 27 27 O 1.34773 * 120.00018 * 180.02562 * 25 24 2 28 28 H 1.09005 * 109.46818 * 270.26153 * 1 2 3 29 29 H 1.09003 * 109.46931 * 30.25636 * 1 2 3 30 30 H 1.08997 * 109.47352 * 150.26508 * 1 2 3 31 31 H 1.08998 * 109.47074 * 149.69368 * 5 4 3 32 32 H 1.09008 * 109.46468 * 29.69339 * 5 4 3 33 33 H 1.08996 * 109.47008 * 270.00543 * 7 6 5 34 34 H 1.08997 * 109.46865 * 30.00228 * 7 6 5 35 35 H 1.08998 * 109.47058 * 149.99741 * 7 6 5 36 36 H 0.96999 * 120.00409 * 0.02562 * 10 8 6 37 37 H 1.08996 * 109.47564 * 300.00635 * 11 10 8 38 38 H 1.09000 * 109.46872 * 60.00432 * 11 10 8 39 39 H 0.96996 * 119.99850 * 359.97438 * 14 12 11 40 40 H 0.97002 * 120.00301 * 179.97438 * 18 17 15 41 41 H 1.07998 * 127.02911 * 180.25175 * 23 4 3 42 42 H 0.96700 * 116.99695 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0836 0.0000 4 6 3.5860 0.7387 -0.0035 5 6 4.7458 1.7010 -0.0072 6 7 5.1224 2.0066 -1.3896 7 6 6.1209 1.1831 -2.0759 8 6 4.5502 3.0454 -2.0300 9 8 3.7179 3.7259 -1.4621 10 7 4.8971 3.3268 -3.3016 11 6 4.2748 4.4556 -3.9979 12 6 4.8316 4.5527 -5.3949 13 8 5.6665 3.7577 -5.7717 14 7 4.4026 5.5238 -6.2253 15 6 4.9096 5.6125 -7.4960 16 1 5.6524 4.9040 -7.8318 17 6 4.4669 6.6132 -8.3522 18 7 3.5620 7.4744 -7.9443 19 14 5.1572 6.7337 -10.0839 20 1 4.8678 5.4772 -10.8207 21 1 4.5268 7.8783 -10.7896 22 1 6.6260 6.9418 -10.0179 23 6 3.6857 -0.5991 0.0026 24 6 2.3055 -1.1071 0.0050 25 6 1.8753 -2.5151 0.0120 26 8 0.6911 -2.7885 0.0133 27 8 2.7946 -3.5006 0.0170 28 1 -0.3633 0.0047 1.0277 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3634 -0.8923 -0.5097 31 1 5.5934 1.2505 0.5092 32 1 4.4567 2.6203 0.5023 33 1 7.1139 1.5991 -1.9058 34 1 6.0818 0.1655 -1.6872 35 1 5.9098 1.1719 -3.1452 36 1 5.5582 2.7815 -3.7560 37 1 3.1967 4.3028 -4.0467 38 1 4.4869 5.3777 -3.4569 39 1 3.7352 6.1598 -5.9239 40 1 3.2533 8.1732 -8.5420 41 1 4.5938 -1.1836 0.0057 42 1 2.4639 -4.4093 0.0211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608043977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:06 Heat of formation + Delta-G solvation = -160.463980 kcal Electronic energy + Delta-G solvation = -28625.571830 eV Core-core repulsion = 24185.870709 eV Total energy + Delta-G solvation = -4439.701120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.77052 -41.37016 -40.89792 -40.06711 -37.14278 -36.89665 -36.26463 -35.39847 -34.21886 -33.42770 -33.22461 -30.38575 -29.02062 -27.75184 -26.70397 -25.73813 -24.76288 -22.77400 -21.45072 -21.25906 -20.52161 -20.11852 -19.27947 -19.13107 -18.15543 -17.87503 -17.44698 -17.18857 -16.93922 -16.65173 -16.51737 -16.39298 -15.99426 -15.92667 -15.20427 -15.13455 -14.98503 -14.37068 -14.33150 -14.02902 -14.00152 -13.89435 -13.68787 -13.53741 -13.51588 -13.43587 -13.01288 -12.89655 -12.62226 -12.57480 -12.46952 -12.13614 -11.75204 -11.56229 -11.41275 -10.96787 -10.56429 -10.33658 -10.10202 -9.79290 -9.58594 -8.50789 -6.01244 0.02785 0.71086 1.38190 1.42724 1.53097 1.56075 1.66707 1.89088 1.96965 2.05234 2.19032 2.28469 2.87462 3.16301 3.17091 3.34372 3.62221 4.02706 4.08437 4.19519 4.22641 4.25954 4.41359 4.43876 4.44953 4.51239 4.54181 4.61614 4.71988 4.84549 4.92247 5.05034 5.24276 5.29312 5.38289 5.40280 5.53678 5.74720 5.91761 6.00746 6.47495 6.84664 6.96237 7.03060 7.39721 7.47443 7.93625 8.65881 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.002084 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.544388 B =13430.740421 C =13712.049440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.088 3.912 3 O -0.177 6.177 4 C -0.043 4.043 5 C 0.211 3.789 6 N -0.625 5.625 7 C 0.070 3.930 8 C 0.701 3.299 9 O -0.623 6.623 10 N -0.724 5.724 11 C 0.140 3.860 12 C 0.434 3.566 13 O -0.623 6.623 14 N -0.559 5.559 15 C -0.337 4.337 16 H 0.087 0.913 17 C -0.011 4.011 18 N -0.916 5.916 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.269 1.269 23 C -0.139 4.139 24 C -0.264 4.264 25 C 0.565 3.435 26 O -0.545 6.545 27 O -0.501 6.501 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.163 0.837 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.058 0.942 36 H 0.411 0.589 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.399 0.601 40 H 0.280 0.720 41 H 0.192 0.808 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.943 -17.816 18.929 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.034 3.966 3 O -0.073 6.073 4 C -0.092 4.092 5 C 0.088 3.912 6 N -0.361 5.361 7 C -0.072 4.072 8 C 0.402 3.598 9 O -0.504 6.504 10 N -0.383 5.383 11 C 0.012 3.988 12 C 0.221 3.779 13 O -0.511 6.511 14 N -0.194 5.194 15 C -0.466 4.466 16 H 0.105 0.895 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.159 4.159 24 C -0.267 4.267 25 C 0.412 3.588 26 O -0.439 6.439 27 O -0.315 6.315 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.181 0.819 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.250 0.750 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.209 0.791 42 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 0.593 -17.040 18.954 25.495 hybrid contribution -0.254 -0.333 -1.084 1.162 sum 0.339 -17.374 17.870 24.926 Atomic orbital electron populations 1.20769 0.82468 1.05445 1.05673 1.23384 0.95187 0.83151 0.94868 1.83875 1.17965 1.35020 1.70461 1.23310 0.82606 0.95878 1.07415 1.20050 0.91934 0.97411 0.81807 1.47111 1.44041 1.30265 1.14702 1.22062 0.91278 0.96655 0.97177 1.16007 0.81132 0.81591 0.81093 1.90895 1.37752 1.54074 1.67640 1.44869 1.46942 1.33963 1.12507 1.20584 0.97893 0.90736 0.89612 1.20368 0.85889 0.83713 0.87928 1.90458 1.37774 1.44854 1.78039 1.41835 1.37925 1.27417 1.12257 1.19704 1.23022 1.14605 0.89312 0.89466 1.26146 0.96330 0.94692 1.04022 1.69676 1.29864 1.17110 1.38980 0.84922 0.78481 0.78109 0.76439 1.19497 1.19692 1.19367 1.22915 0.96874 0.92543 1.03576 1.20317 0.95066 0.90703 1.20619 1.19537 0.82747 0.85446 0.71059 1.90869 1.19292 1.84842 1.48851 1.84522 1.41158 1.20649 1.85181 0.87275 0.89183 0.87903 0.81915 0.89145 0.90210 0.87538 0.92284 0.74955 0.89508 0.88893 0.76723 0.91058 0.79073 0.70419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.89 71.24 0.70 -0.88 16 2 C 0.09 2.03 7.38 25.28 0.19 2.22 16 3 O -0.18 -4.66 10.52 4.75 0.05 -4.61 16 4 C -0.04 -0.89 6.86 24.76 0.17 -0.72 16 5 C 0.21 3.61 5.92 85.63 0.51 4.12 16 6 N -0.62 -13.69 2.86 -869.32 -2.48 -16.18 16 7 C 0.07 1.04 10.20 127.77 1.30 2.35 16 8 C 0.70 22.36 8.28 179.05 1.48 23.85 16 9 O -0.62 -24.10 15.92 -3.98 -0.06 -24.17 16 10 N -0.72 -24.28 5.39 -482.29 -2.60 -26.88 16 11 C 0.14 5.25 6.15 85.63 0.53 5.78 16 12 C 0.43 20.07 7.85 87.66 0.69 20.76 16 13 O -0.62 -31.89 15.24 -3.06 -0.05 -31.94 16 14 N -0.56 -28.13 5.29 -306.99 -1.62 -29.76 16 15 C -0.34 -18.51 9.68 84.04 0.81 -17.70 16 16 H 0.09 5.01 7.16 -2.91 -0.02 4.98 16 17 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 18 N -0.92 -48.75 13.05 21.66 0.28 -48.47 16 19 Si 1.00 41.57 29.55 68.60 2.03 43.60 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 23 C -0.14 -2.42 10.93 23.66 0.26 -2.16 16 24 C -0.26 -5.66 6.32 -19.00 -0.12 -5.78 16 25 C 0.57 11.28 8.33 70.19 0.58 11.87 16 26 O -0.55 -13.15 15.63 19.73 0.31 -12.84 16 27 O -0.50 -6.49 13.34 -56.84 -0.76 -7.25 16 28 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 1.96 6.49 -2.39 -0.02 1.95 16 31 H 0.16 1.13 8.07 -2.39 -0.02 1.11 16 32 H 0.09 1.87 7.42 -2.38 -0.02 1.85 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 0.91 8.07 -2.39 -0.02 0.89 16 35 H 0.06 1.09 6.36 -2.39 -0.02 1.08 16 36 H 0.41 13.33 5.17 -92.71 -0.48 12.85 16 37 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 40 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 41 H 0.19 2.01 8.06 -2.91 -0.02 1.98 16 42 H 0.43 1.52 9.11 -74.06 -0.67 0.84 16 Total: -1.00 -77.74 374.25 1.90 -75.84 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -0.76 Total: 39.08 kcal Atomic # 6 Polarization: 36.00 SS G_CDS: 7.57 Total: 43.58 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -6.43 Total: -121.29 kcal Atomic # 8 Polarization: -80.29 SS G_CDS: -0.51 Total: -80.80 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -77.74 1.90 -75.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608043977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.626 kcal (2) G-P(sol) polarization free energy of solvation -77.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds