Wall clock time and date at job start Tue Mar 31 2020 22:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 120.00167 * 2 1 4 4 H 1.48504 * 109.46904 * 240.00167 * 3 2 1 5 5 H 1.48499 * 109.46960 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47233 * 119.99955 * 3 2 1 7 7 C 1.38952 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00146 * 157.20597 * 7 2 1 9 9 N 1.37093 * 119.99847 * 337.21435 * 7 2 1 10 10 C 1.46498 * 120.00208 * 325.34244 * 9 7 2 11 11 C 1.53002 * 109.47152 * 270.00418 * 10 9 7 12 12 C 1.50700 * 109.47123 * 179.97438 * 11 10 9 13 13 O 1.20827 * 120.00132 * 359.97438 * 12 11 10 14 14 O 1.34236 * 119.99879 * 179.97438 * 12 11 10 15 15 C 1.34776 * 120.00074 * 145.34255 * 9 7 2 16 16 O 1.21292 * 120.00027 * 184.88192 * 15 9 7 17 17 C 1.50699 * 120.00297 * 4.88287 * 15 9 7 18 18 N 1.46497 * 109.47225 * 179.70808 * 17 15 9 19 19 C 1.34781 * 119.99782 * 180.02562 * 18 17 15 20 20 O 1.21592 * 119.99912 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00185 * 180.02562 * 19 18 17 22 22 C 1.46495 * 120.00064 * 179.97438 * 21 19 18 23 23 C 1.50701 * 109.46764 * 180.02562 * 22 21 19 24 24 C 1.34515 * 125.79145 * 90.00543 * 23 22 21 25 25 C 1.41380 * 106.84111 * 179.97438 * 24 23 22 26 26 C 1.34512 * 106.84264 * 359.97438 * 25 24 23 27 27 O 1.34302 * 125.78802 * 269.68707 * 23 22 21 28 28 H 0.96999 * 119.99865 * 5.00848 * 1 2 3 29 29 H 1.09004 * 109.46936 * 29.99883 * 10 9 7 30 30 H 1.09002 * 109.47457 * 150.00188 * 10 9 7 31 31 H 1.09004 * 109.46763 * 299.99571 * 11 10 9 32 32 H 1.09002 * 109.47127 * 59.99568 * 11 10 9 33 33 H 0.96692 * 116.99820 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.46865 * 59.70442 * 17 15 9 35 35 H 1.08998 * 109.47011 * 299.71185 * 17 15 9 36 36 H 0.96994 * 120.00637 * 359.97438 * 18 17 15 37 37 H 0.97002 * 119.99620 * 359.97438 * 21 19 18 38 38 H 1.08995 * 109.47254 * 299.99641 * 22 21 19 39 39 H 1.09000 * 109.47144 * 60.00081 * 22 21 19 40 40 H 1.08001 * 126.57772 * 0.02562 * 24 23 22 41 41 H 1.08004 * 126.57831 * 179.97438 * 25 24 23 42 42 H 1.07998 * 125.79322 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 -0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0257 -1.2400 -0.3618 9 7 1.4037 -2.3441 0.4609 10 6 0.4538 -2.2714 1.5738 11 6 1.2037 -2.4419 2.8964 12 6 0.2266 -2.3665 4.0413 13 8 -0.9489 -2.1935 3.8219 14 8 0.6623 -2.4914 5.3048 15 6 1.6826 -3.5325 -0.1104 16 8 1.0825 -4.5278 0.2365 17 6 2.7400 -3.6246 -1.1802 18 7 2.8580 -5.0133 -1.6319 19 6 3.7480 -5.3366 -2.5909 20 8 4.4527 -4.4757 -3.0815 21 7 3.8563 -6.6140 -3.0068 22 6 4.8234 -6.9653 -4.0496 23 6 4.7447 -8.4440 -4.3300 24 6 3.9471 -9.0307 -5.2405 25 6 4.1961 -10.4205 -5.1681 26 6 5.1314 -10.6000 -4.2181 27 8 5.4635 -9.3988 -3.7173 28 1 -0.4850 0.8368 -0.0733 29 1 -0.0463 -1.3028 1.5619 30 1 -0.2873 -3.0642 1.4714 31 1 1.7038 -3.4104 2.9082 32 1 1.9448 -1.6491 2.9988 33 1 -0.0017 -2.4365 6.0055 34 1 3.6958 -3.2915 -0.7759 35 1 2.4611 -2.9911 -2.0222 36 1 2.2961 -5.7001 -1.2403 37 1 3.2939 -7.3007 -2.6157 38 1 4.5941 -6.4108 -4.9595 39 1 5.8287 -6.7119 -3.7132 40 1 3.2508 -8.5351 -5.9007 41 1 3.7256 -11.1905 -5.7617 42 1 5.5477 -11.5486 -3.9128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:34 Heat of formation + Delta-G solvation = -130.238272 kcal Electronic energy + Delta-G solvation = -28455.246681 eV Core-core repulsion = 24016.856246 eV Total energy + Delta-G solvation = -4438.390435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.85038 -39.93166 -39.73877 -38.58536 -35.89781 -35.33127 -34.96957 -33.83434 -33.21623 -32.03940 -30.97586 -30.43898 -27.42755 -25.56088 -25.27957 -23.48283 -22.03404 -20.87697 -20.80407 -20.43887 -19.36656 -18.66483 -17.89749 -17.65539 -16.80959 -16.46459 -16.09148 -15.95189 -15.68182 -15.57305 -15.40182 -14.83130 -14.52648 -14.39039 -14.29069 -13.82643 -13.47221 -13.22010 -13.10788 -12.90129 -12.83631 -12.77659 -12.39492 -12.23065 -11.98951 -11.54530 -11.29776 -11.19763 -11.08910 -10.78425 -10.48775 -10.25032 -10.21031 -10.13719 -10.04847 -9.33587 -9.18600 -8.85787 -8.71481 -8.53938 -7.73967 -6.51260 -4.21186 1.31630 2.26292 2.61865 2.63664 3.03987 3.08007 3.17602 3.18983 3.34829 3.44327 3.68173 4.03348 4.33094 4.45127 4.73710 4.76997 4.77725 4.83014 5.19141 5.38035 5.51215 5.53005 5.66356 5.70934 5.78642 5.83707 6.04359 6.13400 6.18456 6.26113 6.31074 6.40924 6.71044 6.79212 6.84115 6.84493 7.10077 7.21645 7.39572 7.70179 8.18686 8.25686 8.26343 8.81910 8.89705 9.25695 9.67994 10.49978 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.002353 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.844084 B =11898.333461 C =13427.510387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.049 3.951 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.427 5.427 10 C 0.121 3.879 11 C -0.124 4.124 12 C 0.483 3.517 13 O -0.513 6.513 14 O -0.524 6.524 15 C 0.462 3.538 16 O -0.605 6.605 17 C 0.138 3.862 18 N -0.727 5.727 19 C 0.707 3.293 20 O -0.594 6.594 21 N -0.749 5.749 22 C 0.224 3.776 23 C -0.033 4.033 24 C -0.186 4.186 25 C -0.218 4.218 26 C -0.033 4.033 27 O -0.171 6.171 28 H 0.275 0.725 29 H 0.121 0.879 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.402 0.598 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.404 0.596 37 H 0.399 0.601 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.152 0.848 41 H 0.149 0.851 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.182 -13.677 -3.006 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.159 4.159 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.003 4.003 11 C -0.163 4.163 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.251 3.749 16 O -0.492 6.492 17 C 0.011 3.989 18 N -0.384 5.384 19 C 0.407 3.593 20 O -0.472 6.472 21 N -0.407 5.407 22 C 0.100 3.900 23 C -0.083 4.083 24 C -0.206 4.206 25 C -0.237 4.237 26 C -0.101 4.101 27 O -0.067 6.067 28 H 0.086 0.914 29 H 0.139 0.861 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.259 0.741 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.241 0.759 37 H 0.233 0.767 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.532 -13.053 -3.364 15.440 hybrid contribution -0.726 0.095 0.637 0.971 sum 6.805 -12.958 -2.727 14.888 Atomic orbital electron populations 1.69837 1.06400 1.28638 1.43513 1.25400 0.95080 1.00124 0.95272 0.86158 0.79413 0.80742 0.79484 1.19342 1.20834 1.19553 1.19485 0.98260 0.85126 1.45860 0.88418 1.43303 1.38782 1.05517 1.26848 1.21278 0.91065 1.06329 0.81603 1.21833 0.98080 1.05080 0.91310 1.23742 0.89114 0.71430 0.83186 1.90709 1.19346 1.44918 1.85117 1.84588 1.46151 1.85265 1.17608 1.20294 0.86150 0.84543 0.83960 1.90518 1.55034 1.36868 1.66768 1.20751 0.99076 0.81115 0.97968 1.44893 1.41266 1.11431 1.40853 1.15767 0.81137 0.82250 0.80183 1.90928 1.47872 1.47881 1.60536 1.45084 1.43628 1.08578 1.43427 1.19350 0.94201 0.84080 0.92398 1.22400 0.97114 0.91046 0.97736 1.21746 1.02664 0.94087 1.02061 1.21889 1.02370 0.96861 1.02624 1.24125 1.00283 0.87633 0.98066 1.84059 1.53735 1.15217 1.53660 0.91427 0.86146 0.91297 0.88581 0.87577 0.74071 0.89659 0.88734 0.75891 0.76724 0.88399 0.89873 0.83067 0.83274 0.77973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.67 11.34 55.50 0.63 -21.04 16 2 C 0.05 1.18 4.95 -17.47 -0.09 1.10 16 3 Si 0.92 18.64 29.61 -169.99 -5.03 13.60 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.36 -8.50 8.69 -14.93 -0.13 -8.63 16 8 H 0.10 2.20 7.01 -52.48 -0.37 1.83 16 9 N -0.43 -9.97 2.54 -114.81 -0.29 -10.26 16 10 C 0.12 2.77 4.34 -4.04 -0.02 2.75 16 11 C -0.12 -2.33 6.14 -27.88 -0.17 -2.50 16 12 C 0.48 8.57 8.33 36.01 0.30 8.87 16 13 O -0.51 -10.66 16.74 -18.75 -0.31 -10.98 16 14 O -0.52 -7.23 13.42 -39.27 -0.53 -7.75 16 15 C 0.46 10.34 7.70 -10.99 -0.08 10.25 16 16 O -0.60 -14.34 15.22 5.55 0.08 -14.25 16 17 C 0.14 2.72 4.76 -5.20 -0.02 2.69 16 18 N -0.73 -12.53 5.53 -66.42 -0.37 -12.90 16 19 C 0.71 11.79 8.57 -86.91 -0.74 11.04 16 20 O -0.59 -11.89 16.34 5.28 0.09 -11.80 16 21 N -0.75 -9.43 5.55 -66.42 -0.37 -9.80 16 22 C 0.22 2.47 6.20 -5.20 -0.03 2.44 16 23 C -0.03 -0.33 6.69 -35.62 -0.24 -0.57 16 24 C -0.19 -1.71 10.81 -39.70 -0.43 -2.14 16 25 C -0.22 -1.76 10.91 -39.70 -0.43 -2.19 16 26 C -0.03 -0.25 12.09 29.42 0.36 0.10 16 27 O -0.17 -1.77 10.65 5.70 0.06 -1.71 16 28 H 0.28 6.69 8.32 -40.82 -0.34 6.35 16 29 H 0.12 3.03 5.32 -51.93 -0.28 2.75 16 30 H 0.07 1.68 7.32 -51.93 -0.38 1.30 16 31 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.11 1.91 8.14 -51.93 -0.42 1.48 16 33 H 0.40 3.60 9.10 45.56 0.41 4.01 16 34 H 0.09 1.65 7.78 -51.93 -0.40 1.24 16 35 H 0.09 1.97 8.05 -51.93 -0.42 1.55 16 36 H 0.40 6.62 7.45 -40.82 -0.30 6.32 16 37 H 0.40 4.31 8.48 -40.82 -0.35 3.96 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.15 0.88 8.06 -52.48 -0.42 0.45 16 42 H 0.20 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -32.32 373.99 -6.32 -38.63 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -4.18 Total: 19.41 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: -1.74 Total: 23.21 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.40 Total: -54.00 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.61 Total: -46.50 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.32 -6.32 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.604 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds