Wall clock time and date at job start Tue Mar 31 2020 22:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 120.00167 * 2 1 4 4 H 1.48504 * 109.46904 * 240.00167 * 3 2 1 5 5 H 1.48499 * 109.46960 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47233 * 119.99955 * 3 2 1 7 7 C 1.38952 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00146 * 157.20597 * 7 2 1 9 9 N 1.37093 * 119.99847 * 337.21435 * 7 2 1 10 10 C 1.46498 * 120.00208 * 325.34244 * 9 7 2 11 11 C 1.53002 * 109.47152 * 270.00418 * 10 9 7 12 12 C 1.50700 * 109.47123 * 179.97438 * 11 10 9 13 13 O 1.20827 * 120.00132 * 359.97438 * 12 11 10 14 14 O 1.34236 * 119.99879 * 179.97438 * 12 11 10 15 15 C 1.34776 * 120.00074 * 145.34255 * 9 7 2 16 16 O 1.21292 * 120.00027 * 184.88192 * 15 9 7 17 17 C 1.50699 * 120.00297 * 4.88287 * 15 9 7 18 18 N 1.46497 * 109.47225 * 179.70808 * 17 15 9 19 19 C 1.34781 * 119.99782 * 180.02562 * 18 17 15 20 20 O 1.21592 * 119.99912 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00185 * 180.02562 * 19 18 17 22 22 C 1.46495 * 120.00064 * 179.97438 * 21 19 18 23 23 C 1.50701 * 109.46764 * 180.02562 * 22 21 19 24 24 C 1.34515 * 125.79145 * 90.00543 * 23 22 21 25 25 C 1.41380 * 106.84111 * 179.97438 * 24 23 22 26 26 C 1.34512 * 106.84264 * 359.97438 * 25 24 23 27 27 O 1.34302 * 125.78802 * 269.68707 * 23 22 21 28 28 H 0.96999 * 119.99865 * 5.00848 * 1 2 3 29 29 H 1.09004 * 109.46936 * 29.99883 * 10 9 7 30 30 H 1.09002 * 109.47457 * 150.00188 * 10 9 7 31 31 H 1.09004 * 109.46763 * 299.99571 * 11 10 9 32 32 H 1.09002 * 109.47127 * 59.99568 * 11 10 9 33 33 H 0.96692 * 116.99820 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.46865 * 59.70442 * 17 15 9 35 35 H 1.08998 * 109.47011 * 299.71185 * 17 15 9 36 36 H 0.96994 * 120.00637 * 359.97438 * 18 17 15 37 37 H 0.97002 * 119.99620 * 359.97438 * 21 19 18 38 38 H 1.08995 * 109.47254 * 299.99641 * 22 21 19 39 39 H 1.09000 * 109.47144 * 60.00081 * 22 21 19 40 40 H 1.08001 * 126.57772 * 0.02562 * 24 23 22 41 41 H 1.08004 * 126.57831 * 179.97438 * 25 24 23 42 42 H 1.07998 * 125.79322 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 -0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0257 -1.2400 -0.3618 9 7 1.4037 -2.3441 0.4609 10 6 0.4538 -2.2714 1.5738 11 6 1.2037 -2.4419 2.8964 12 6 0.2266 -2.3665 4.0413 13 8 -0.9489 -2.1935 3.8219 14 8 0.6623 -2.4914 5.3048 15 6 1.6826 -3.5325 -0.1104 16 8 1.0825 -4.5278 0.2365 17 6 2.7400 -3.6246 -1.1802 18 7 2.8580 -5.0133 -1.6319 19 6 3.7480 -5.3366 -2.5909 20 8 4.4527 -4.4757 -3.0815 21 7 3.8563 -6.6140 -3.0068 22 6 4.8234 -6.9653 -4.0496 23 6 4.7447 -8.4440 -4.3300 24 6 3.9471 -9.0307 -5.2405 25 6 4.1961 -10.4205 -5.1681 26 6 5.1314 -10.6000 -4.2181 27 8 5.4635 -9.3988 -3.7173 28 1 -0.4850 0.8368 -0.0733 29 1 -0.0463 -1.3028 1.5619 30 1 -0.2873 -3.0642 1.4714 31 1 1.7038 -3.4104 2.9082 32 1 1.9448 -1.6491 2.9988 33 1 -0.0017 -2.4365 6.0055 34 1 3.6958 -3.2915 -0.7759 35 1 2.4611 -2.9911 -2.0222 36 1 2.2961 -5.7001 -1.2403 37 1 3.2939 -7.3007 -2.6157 38 1 4.5941 -6.4108 -4.9595 39 1 5.8287 -6.7119 -3.7132 40 1 3.2508 -8.5351 -5.9007 41 1 3.7256 -11.1905 -5.7617 42 1 5.5477 -11.5486 -3.9128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:33 Heat of formation + Delta-G solvation = -154.681339 kcal Electronic energy + Delta-G solvation = -28456.306612 eV Core-core repulsion = 24016.856246 eV Total energy + Delta-G solvation = -4439.450366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.53279 -41.41182 -41.12057 -40.24467 -37.32250 -36.91553 -36.17631 -35.35911 -33.91131 -33.83079 -32.57483 -31.40993 -28.79552 -27.12480 -26.57001 -25.05383 -22.69432 -22.19824 -21.86917 -21.55059 -21.14057 -19.99596 -19.29509 -18.72942 -18.11737 -17.66378 -17.58560 -17.37172 -16.95909 -16.88066 -16.78285 -16.22697 -16.03177 -15.86377 -15.55022 -15.00549 -14.91552 -14.45556 -14.34157 -14.20516 -14.03993 -13.75664 -13.65435 -13.51974 -13.29519 -12.99012 -12.92634 -12.76717 -12.56014 -12.54693 -12.11758 -11.93055 -11.65899 -11.51898 -11.12434 -10.88334 -10.53393 -10.45939 -9.86794 -9.57967 -9.53972 -8.33755 -6.09066 0.58327 1.19866 1.43474 1.51352 1.53504 1.60772 1.79580 1.83130 2.03372 2.09740 2.15409 2.36583 2.96290 3.02028 3.37419 3.63369 3.98596 4.07285 4.11895 4.15902 4.24082 4.39065 4.48788 4.51754 4.56365 4.67116 4.73968 4.89642 4.96491 5.01421 5.14619 5.31180 5.34366 5.36465 5.53568 5.57486 5.61258 5.86394 5.93890 6.17338 6.35103 6.99667 7.00948 7.05754 7.42100 7.52390 7.86360 8.68007 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.002353 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.844084 B =11898.333461 C =13427.510387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.010 3.990 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.368 4.368 8 H 0.109 0.891 9 N -0.437 5.437 10 C 0.125 3.875 11 C -0.116 4.116 12 C 0.495 3.505 13 O -0.550 6.550 14 O -0.507 6.507 15 C 0.457 3.543 16 O -0.621 6.621 17 C 0.151 3.849 18 N -0.725 5.725 19 C 0.708 3.292 20 O -0.628 6.628 21 N -0.732 5.732 22 C 0.225 3.775 23 C -0.053 4.053 24 C -0.185 4.185 25 C -0.231 4.231 26 C -0.027 4.027 27 O -0.189 6.189 28 H 0.274 0.726 29 H 0.098 0.902 30 H 0.042 0.958 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.427 0.573 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.409 0.591 37 H 0.409 0.591 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.160 0.840 41 H 0.171 0.829 42 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.599 -14.752 -2.711 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.195 4.195 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.494 4.494 8 H 0.126 0.874 9 N -0.154 5.154 10 C 0.001 3.999 11 C -0.155 4.155 12 C 0.338 3.662 13 O -0.440 6.440 14 O -0.321 6.321 15 C 0.247 3.753 16 O -0.510 6.510 17 C 0.024 3.976 18 N -0.382 5.382 19 C 0.408 3.592 20 O -0.509 6.509 21 N -0.390 5.390 22 C 0.102 3.898 23 C -0.103 4.103 24 C -0.205 4.205 25 C -0.249 4.249 26 C -0.095 4.095 27 O -0.086 6.086 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.289 0.711 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.247 0.753 37 H 0.245 0.755 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.178 0.822 41 H 0.188 0.812 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.960 -14.183 -3.042 17.050 hybrid contribution -1.185 0.277 0.552 1.336 sum 7.776 -13.905 -2.490 16.125 Atomic orbital electron populations 1.69961 1.07973 1.29239 1.45028 1.26196 0.95564 1.03035 0.94714 0.85184 0.78047 0.76606 0.79847 1.18840 1.21348 1.18452 1.19811 0.98673 0.85263 1.45699 0.87359 1.43493 1.38742 1.05888 1.27299 1.21064 0.91148 1.03947 0.83738 1.21601 0.97922 1.06011 0.89945 1.23365 0.88026 0.70619 0.84169 1.90710 1.20674 1.46772 1.85872 1.84503 1.46697 1.84226 1.16667 1.20701 0.86395 0.84095 0.84139 1.90497 1.55775 1.37310 1.67379 1.20484 0.98238 0.82407 0.96511 1.44762 1.41698 1.10545 1.41222 1.15842 0.80538 0.83099 0.79756 1.90903 1.49119 1.49265 1.61608 1.44997 1.43549 1.07280 1.43133 1.19356 0.93356 0.85255 0.91819 1.22172 0.98521 0.90591 0.99009 1.22016 1.02095 0.94973 1.01466 1.22222 1.02774 0.96738 1.03199 1.24916 0.99524 0.87847 0.97167 1.84045 1.54181 1.16091 1.54261 0.91581 0.88410 0.93894 0.87608 0.86432 0.71150 0.89052 0.89948 0.75316 0.75510 0.88047 0.90415 0.82221 0.81159 0.74478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.14 11.34 21.66 0.25 -45.89 16 2 C 0.01 0.46 4.95 84.93 0.42 0.88 16 3 Si 0.98 37.84 29.61 68.60 2.03 39.87 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.29 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 7 C -0.37 -17.34 8.69 84.04 0.73 -16.61 16 8 H 0.11 4.80 7.01 -2.91 -0.02 4.78 16 9 N -0.44 -20.63 2.54 -635.53 -1.61 -22.24 16 10 C 0.13 5.85 4.34 86.38 0.37 6.22 16 11 C -0.12 -4.30 6.14 29.85 0.18 -4.12 16 12 C 0.49 17.10 8.33 71.24 0.59 17.69 16 13 O -0.55 -22.91 16.74 21.96 0.37 -22.54 16 14 O -0.51 -12.72 13.42 -51.47 -0.69 -13.41 16 15 C 0.46 20.66 7.70 87.66 0.67 21.33 16 16 O -0.62 -29.75 15.22 -3.07 -0.05 -29.80 16 17 C 0.15 5.98 4.76 85.63 0.41 6.38 16 18 N -0.72 -24.83 5.53 -482.30 -2.67 -27.49 16 19 C 0.71 23.38 8.57 179.05 1.53 24.92 16 20 O -0.63 -25.12 16.34 -4.01 -0.07 -25.18 16 21 N -0.73 -17.97 5.55 -482.30 -2.68 -20.65 16 22 C 0.23 4.88 6.20 85.63 0.53 5.41 16 23 C -0.05 -1.03 6.69 24.83 0.17 -0.86 16 24 C -0.19 -3.15 10.81 22.19 0.24 -2.91 16 25 C -0.23 -3.18 10.91 22.19 0.24 -2.94 16 26 C -0.03 -0.35 12.09 66.97 0.81 0.46 16 27 O -0.19 -3.65 10.65 -2.52 -0.03 -3.68 16 28 H 0.27 13.63 8.32 -92.71 -0.77 12.86 16 29 H 0.10 5.07 5.32 -2.38 -0.01 5.06 16 30 H 0.04 2.18 7.32 -2.39 -0.02 2.16 16 31 H 0.11 3.71 8.14 -2.38 -0.02 3.69 16 32 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 33 H 0.43 6.43 9.10 -74.06 -0.67 5.76 16 34 H 0.09 3.50 7.78 -2.39 -0.02 3.48 16 35 H 0.08 3.47 8.05 -2.39 -0.02 3.45 16 36 H 0.41 13.27 7.45 -92.71 -0.69 12.58 16 37 H 0.41 8.45 8.48 -92.71 -0.79 7.66 16 38 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 41 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.24 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -70.30 373.99 0.72 -69.58 By element: Atomic # 1 Polarization: 46.63 SS G_CDS: -1.04 Total: 45.59 kcal Atomic # 6 Polarization: 48.94 SS G_CDS: 6.91 Total: 55.85 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -6.71 Total: -116.28 kcal Atomic # 8 Polarization: -94.15 SS G_CDS: -0.46 Total: -94.61 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -70.30 0.72 -69.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.102 kcal (2) G-P(sol) polarization free energy of solvation -70.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds