Wall clock time and date at job start Tue Mar 31 2020 22:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48494 * 109.46989 * 275.00041 * 3 2 1 5 5 H 1.48496 * 109.47202 * 35.00022 * 3 2 1 6 6 H 1.48501 * 109.46958 * 154.99876 * 3 2 1 7 7 C 1.38814 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00419 * 214.05942 * 7 2 1 9 9 N 1.36943 * 119.99778 * 34.05861 * 7 2 1 10 10 C 1.46500 * 119.99951 * 354.54910 * 9 7 2 11 11 C 1.53005 * 109.46764 * 271.69766 * 10 9 7 12 12 C 1.50707 * 109.47205 * 184.53668 * 11 10 9 13 13 O 1.20830 * 119.99355 * 359.97438 * 12 11 10 14 14 O 1.34219 * 120.00038 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99929 * 174.54721 * 9 7 2 16 16 C 1.50700 * 109.47139 * 91.06940 * 15 9 7 17 17 N 1.30109 * 124.94732 * 279.77112 * 16 15 9 18 18 C 1.35787 * 109.64071 * 180.02562 * 17 16 15 19 19 C 1.39739 * 133.60025 * 179.97438 * 18 17 16 20 20 C 1.36597 * 119.88502 * 180.02562 * 19 18 17 21 21 C 1.38778 * 120.67355 * 359.97289 * 20 19 18 22 22 C 1.37854 * 120.44711 * 0.05091 * 21 20 19 23 23 C 1.38835 * 119.69263 * 359.97174 * 22 21 20 24 24 N 1.36035 * 124.94706 * 99.80163 * 16 15 9 25 25 C 1.46494 * 126.35359 * 0.02562 * 24 16 15 26 26 F 1.39897 * 109.47283 * 204.90836 * 25 24 16 27 27 F 1.39904 * 109.46800 * 324.90766 * 25 24 16 28 28 H 0.96996 * 119.99977 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47082 * 31.69458 * 10 9 7 30 30 H 1.08997 * 109.47360 * 151.69954 * 10 9 7 31 31 H 1.08997 * 109.47236 * 304.53550 * 11 10 9 32 32 H 1.09000 * 109.47086 * 64.53565 * 11 10 9 33 33 H 0.96705 * 116.99994 * 179.97438 * 14 12 11 34 34 H 1.09000 * 109.47020 * 331.06810 * 15 9 7 35 35 H 1.09002 * 109.46892 * 211.06790 * 15 9 7 36 36 H 1.07998 * 120.05246 * 0.30441 * 19 18 17 37 37 H 1.08005 * 119.66106 * 180.02562 * 20 19 18 38 38 H 1.07994 * 119.77786 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.14958 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.47120 * 84.90850 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3919 2.1074 -1.3947 5 1 1.5045 2.6198 0.8030 6 1 3.5965 1.4120 0.5917 7 6 2.0103 -1.2021 0.0005 8 1 2.9513 -1.2822 0.5244 9 7 1.5017 -2.2867 -0.6632 10 6 0.1713 -2.2150 -1.2723 11 6 -0.8836 -2.6255 -0.2429 12 6 -2.2397 -2.6595 -0.8994 13 8 -2.3510 -2.3831 -2.0704 14 8 -3.3238 -2.9966 -0.1834 15 6 2.2882 -3.5185 -0.7641 16 6 1.9593 -4.4211 0.3970 17 7 2.4479 -4.3000 1.5968 18 6 1.9436 -5.2754 2.3956 19 6 2.1236 -5.6085 3.7407 20 6 1.4590 -6.6771 4.2721 21 6 0.6030 -7.4390 3.4893 22 6 0.4104 -7.1292 2.1599 23 6 1.0778 -6.0470 1.6023 24 7 1.1088 -5.4814 0.3433 25 6 0.3649 -5.9392 -0.8328 26 9 -0.7766 -6.6351 -0.4208 27 9 -0.0150 -4.8348 -1.6032 28 1 -0.4850 0.8400 0.0004 29 1 -0.0221 -1.1947 -1.6036 30 1 0.1263 -2.8894 -2.1274 31 1 -0.6443 -3.6145 0.1480 32 1 -0.8936 -1.9045 0.5745 33 1 -4.1719 -3.0040 -0.6479 34 1 3.3502 -3.2741 -0.7449 35 1 2.0491 -4.0267 -1.6984 36 1 2.7837 -5.0194 4.3601 37 1 1.6006 -6.9311 5.3123 38 1 0.0846 -8.2805 3.9245 39 1 -0.2566 -7.7257 1.5551 40 1 0.9967 -6.5979 -1.4286 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608186634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:24 Heat of formation + Delta-G solvation = -66.683365 kcal Electronic energy + Delta-G solvation = -31337.160887 eV Core-core repulsion = 26790.438884 eV Total energy + Delta-G solvation = -4546.722003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.31532 -47.43294 -41.77215 -39.45144 -37.34167 -36.12955 -35.33046 -33.49652 -31.81800 -30.73762 -30.19545 -29.01579 -26.44224 -25.84744 -24.70483 -22.45626 -21.91908 -21.33869 -20.34766 -19.99106 -18.20248 -18.01481 -17.56501 -17.42898 -16.80893 -16.40489 -15.78056 -15.36587 -15.18457 -15.00337 -14.81109 -14.56141 -14.22939 -13.99362 -13.69703 -13.64085 -13.46629 -13.32993 -13.09664 -12.57079 -12.41351 -12.02295 -11.92085 -11.61759 -11.52241 -11.22750 -11.08131 -10.92391 -10.87475 -10.71628 -10.34281 -10.24084 -9.94209 -9.77711 -9.63346 -9.55192 -8.44853 -8.19531 -7.87314 -7.33143 -6.05715 -3.21185 1.16791 1.63403 2.21225 3.02396 3.05041 3.37063 3.46971 3.47768 3.50566 3.84578 4.09864 4.12528 4.40360 4.43919 4.51489 4.64998 5.10411 5.10750 5.19098 5.34857 5.57166 5.58430 5.64791 5.82794 5.96623 6.04164 6.19813 6.25553 6.30389 6.56087 6.61362 6.64650 6.65759 6.72792 7.04216 7.07548 7.23604 7.36662 7.58086 7.82334 8.07050 8.30667 8.63189 8.99557 9.60921 10.02327 11.02262 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.005562 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.540678 B = 5033.387622 C = 6418.409351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.012 3.988 3 Si 0.897 3.103 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.262 4.262 8 H 0.091 0.909 9 N -0.566 5.566 10 C 0.172 3.828 11 C -0.114 4.114 12 C 0.486 3.514 13 O -0.530 6.530 14 O -0.529 6.529 15 C 0.209 3.791 16 C 0.299 3.701 17 N -0.476 5.476 18 C 0.062 3.938 19 C -0.070 4.070 20 C -0.128 4.128 21 C -0.116 4.116 22 C -0.105 4.105 23 C 0.042 3.958 24 N -0.550 5.550 25 C 0.483 3.517 26 F -0.185 7.185 27 F -0.166 7.166 28 H 0.258 0.742 29 H 0.103 0.897 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.133 0.867 33 H 0.393 0.607 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.176 -15.017 0.742 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.187 4.187 3 Si 0.726 3.274 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.389 4.389 8 H 0.108 0.892 9 N -0.283 5.283 10 C 0.047 3.953 11 C -0.153 4.153 12 C 0.330 3.670 13 O -0.419 6.419 14 O -0.340 6.340 15 C 0.077 3.923 16 C 0.031 3.969 17 N -0.194 5.194 18 C -0.055 4.055 19 C -0.090 4.090 20 C -0.149 4.149 21 C -0.136 4.136 22 C -0.126 4.126 23 C -0.064 4.064 24 N -0.253 5.253 25 C 0.347 3.653 26 F -0.167 7.167 27 F -0.147 7.147 28 H 0.068 0.932 29 H 0.121 0.879 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.249 0.751 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.549 -14.145 0.771 14.177 hybrid contribution -1.400 0.222 -0.186 1.430 sum -0.852 -13.923 0.586 13.961 Atomic orbital electron populations 1.70117 1.05637 1.26192 1.50974 1.24762 0.95047 0.98384 1.00464 0.86339 0.79886 0.83536 0.77679 1.21305 1.22129 1.20198 1.19437 1.03837 0.86242 1.29404 0.89162 1.44802 1.14832 1.07516 1.61116 1.21225 0.80856 1.02563 0.90675 1.22370 0.86368 1.02568 1.04036 1.24342 0.86865 0.70706 0.85117 1.90601 1.86887 1.46143 1.18235 1.84668 1.19041 1.82284 1.47963 1.19922 0.98444 0.84781 0.89126 1.26704 0.87037 0.84864 0.98262 1.70580 1.27126 1.21562 1.00127 1.19236 0.97594 0.93991 0.94672 1.20002 1.00118 0.97235 0.91640 1.20578 0.98316 0.96152 0.99830 1.20779 0.99618 1.00355 0.92840 1.20054 1.00721 0.96143 0.95704 1.18817 1.03247 0.99288 0.85070 1.46972 1.40371 1.29025 1.08963 1.21489 0.80933 0.81360 0.81485 1.93065 1.53686 1.78838 1.91085 1.93230 1.91940 1.55193 1.74337 0.93155 0.87881 0.94611 0.92314 0.84931 0.75086 0.88746 0.91467 0.85512 0.85755 0.85710 0.86077 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.72 8.70 55.49 0.48 -23.24 16 2 C 0.01 0.32 4.90 -17.43 -0.09 0.23 16 3 Si 0.90 20.81 29.67 -169.99 -5.04 15.77 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.26 -6.61 9.64 -15.06 -0.15 -6.76 16 8 H 0.09 2.31 8.02 -52.49 -0.42 1.89 16 9 N -0.57 -12.80 2.52 -174.61 -0.44 -13.24 16 10 C 0.17 3.95 3.61 -4.04 -0.01 3.93 16 11 C -0.11 -2.57 4.93 -27.88 -0.14 -2.71 16 12 C 0.49 10.33 8.33 36.01 0.30 10.63 16 13 O -0.53 -12.09 16.69 -18.75 -0.31 -12.40 16 14 O -0.53 -9.50 13.42 -39.23 -0.53 -10.03 16 15 C 0.21 3.85 5.63 -5.19 -0.03 3.82 16 16 C 0.30 5.62 6.74 -154.83 -1.04 4.58 16 17 N -0.48 -9.82 11.27 -8.23 -0.09 -9.91 16 18 C 0.06 1.16 7.23 -84.70 -0.61 0.54 16 19 C -0.07 -1.09 10.05 -39.61 -0.40 -1.49 16 20 C -0.13 -1.62 9.96 -39.97 -0.40 -2.02 16 21 C -0.12 -1.43 10.03 -39.52 -0.40 -1.82 16 22 C -0.11 -1.48 9.57 -39.50 -0.38 -1.86 16 23 C 0.04 0.70 6.71 -83.98 -0.56 0.14 16 24 N -0.55 -9.06 2.64 -116.88 -0.31 -9.37 16 25 C 0.48 6.45 5.96 59.84 0.36 6.80 16 26 F -0.19 -2.55 15.51 2.25 0.03 -2.52 16 27 F -0.17 -2.64 10.14 2.25 0.02 -2.61 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.10 2.72 5.75 -51.93 -0.30 2.42 16 30 H 0.04 0.77 5.73 -51.93 -0.30 0.48 16 31 H 0.06 1.31 5.46 -51.93 -0.28 1.03 16 32 H 0.13 3.46 6.36 -51.93 -0.33 3.13 16 33 H 0.39 4.99 9.10 45.56 0.41 5.40 16 34 H 0.09 1.66 8.03 -51.93 -0.42 1.25 16 35 H 0.07 1.05 6.36 -51.93 -0.33 0.72 16 36 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.50 6.93 -52.49 -0.36 1.14 16 40 H 0.15 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -31.90 337.52 -7.79 -39.69 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -3.15 Total: 8.75 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: -3.55 Total: 14.03 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.36 Total: -55.76 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.84 Total: -22.43 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.06 Total: -5.13 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.04 Total: 15.77 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.90 -7.79 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.991 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds