Wall clock time and date at job start Tue Mar 31 2020 22:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48494 * 109.46989 * 275.00041 * 3 2 1 5 5 H 1.48496 * 109.47202 * 35.00022 * 3 2 1 6 6 H 1.48501 * 109.46958 * 154.99876 * 3 2 1 7 7 C 1.38814 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00419 * 214.05942 * 7 2 1 9 9 N 1.36943 * 119.99778 * 34.05861 * 7 2 1 10 10 C 1.46500 * 119.99951 * 354.54910 * 9 7 2 11 11 C 1.53005 * 109.46764 * 271.69766 * 10 9 7 12 12 C 1.50707 * 109.47205 * 184.53668 * 11 10 9 13 13 O 1.20830 * 119.99355 * 359.97438 * 12 11 10 14 14 O 1.34219 * 120.00038 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99929 * 174.54721 * 9 7 2 16 16 C 1.50700 * 109.47139 * 91.06940 * 15 9 7 17 17 N 1.30109 * 124.94732 * 279.77112 * 16 15 9 18 18 C 1.35787 * 109.64071 * 180.02562 * 17 16 15 19 19 C 1.39739 * 133.60025 * 179.97438 * 18 17 16 20 20 C 1.36597 * 119.88502 * 180.02562 * 19 18 17 21 21 C 1.38778 * 120.67355 * 359.97289 * 20 19 18 22 22 C 1.37854 * 120.44711 * 0.05091 * 21 20 19 23 23 C 1.38835 * 119.69263 * 359.97174 * 22 21 20 24 24 N 1.36035 * 124.94706 * 99.80163 * 16 15 9 25 25 C 1.46494 * 126.35359 * 0.02562 * 24 16 15 26 26 F 1.39897 * 109.47283 * 204.90836 * 25 24 16 27 27 F 1.39904 * 109.46800 * 324.90766 * 25 24 16 28 28 H 0.96996 * 119.99977 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47082 * 31.69458 * 10 9 7 30 30 H 1.08997 * 109.47360 * 151.69954 * 10 9 7 31 31 H 1.08997 * 109.47236 * 304.53550 * 11 10 9 32 32 H 1.09000 * 109.47086 * 64.53565 * 11 10 9 33 33 H 0.96705 * 116.99994 * 179.97438 * 14 12 11 34 34 H 1.09000 * 109.47020 * 331.06810 * 15 9 7 35 35 H 1.09002 * 109.46892 * 211.06790 * 15 9 7 36 36 H 1.07998 * 120.05246 * 0.30441 * 19 18 17 37 37 H 1.08005 * 119.66106 * 180.02562 * 20 19 18 38 38 H 1.07994 * 119.77786 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.14958 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.47120 * 84.90850 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3919 2.1074 -1.3947 5 1 1.5045 2.6198 0.8030 6 1 3.5965 1.4120 0.5917 7 6 2.0103 -1.2021 0.0005 8 1 2.9513 -1.2822 0.5244 9 7 1.5017 -2.2867 -0.6632 10 6 0.1713 -2.2150 -1.2723 11 6 -0.8836 -2.6255 -0.2429 12 6 -2.2397 -2.6595 -0.8994 13 8 -2.3510 -2.3831 -2.0704 14 8 -3.3238 -2.9966 -0.1834 15 6 2.2882 -3.5185 -0.7641 16 6 1.9593 -4.4211 0.3970 17 7 2.4479 -4.3000 1.5968 18 6 1.9436 -5.2754 2.3956 19 6 2.1236 -5.6085 3.7407 20 6 1.4590 -6.6771 4.2721 21 6 0.6030 -7.4390 3.4893 22 6 0.4104 -7.1292 2.1599 23 6 1.0778 -6.0470 1.6023 24 7 1.1088 -5.4814 0.3433 25 6 0.3649 -5.9392 -0.8328 26 9 -0.7766 -6.6351 -0.4208 27 9 -0.0150 -4.8348 -1.6032 28 1 -0.4850 0.8400 0.0004 29 1 -0.0221 -1.1947 -1.6036 30 1 0.1263 -2.8894 -2.1274 31 1 -0.6443 -3.6145 0.1480 32 1 -0.8936 -1.9045 0.5745 33 1 -4.1719 -3.0040 -0.6479 34 1 3.3502 -3.2741 -0.7449 35 1 2.0491 -4.0267 -1.6984 36 1 2.7837 -5.0194 4.3601 37 1 1.6006 -6.9311 5.3123 38 1 0.0846 -8.2805 3.9245 39 1 -0.2566 -7.7257 1.5551 40 1 0.9967 -6.5979 -1.4286 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608186634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:23 Heat of formation + Delta-G solvation = -86.450582 kcal Electronic energy + Delta-G solvation = -31338.018058 eV Core-core repulsion = 26790.438884 eV Total energy + Delta-G solvation = -4547.579174 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.40745 -48.53493 -43.02669 -41.11628 -38.59194 -37.71534 -36.95442 -34.75010 -33.60868 -32.45333 -31.31832 -30.42361 -27.94691 -26.97155 -26.50162 -23.97249 -23.09012 -22.69237 -21.77199 -21.59477 -19.37813 -19.13016 -19.09768 -18.80728 -18.38667 -17.66527 -17.40945 -17.05132 -16.62111 -16.35221 -16.08569 -15.97140 -15.54827 -15.26088 -15.19356 -14.94428 -14.81295 -14.63065 -14.49938 -14.02844 -13.89259 -13.53748 -13.31467 -13.04488 -12.93702 -12.68856 -12.56890 -12.51222 -12.44799 -12.23446 -12.03829 -11.84218 -11.61966 -11.52947 -11.44156 -10.88600 -10.34397 -9.37136 -9.21990 -9.03783 -7.99723 -5.15877 -0.00671 0.51168 1.08315 1.32140 1.49660 1.54607 1.61134 1.78112 2.29575 2.52986 2.55635 2.93151 3.02583 3.11073 3.27475 3.43124 3.54378 3.67894 4.03089 4.18128 4.29383 4.33551 4.47373 4.50730 4.53160 4.63753 4.72789 4.81382 4.88212 4.92875 5.17102 5.43108 5.46494 5.58223 5.59454 5.61469 5.70869 5.84364 5.92524 6.01092 6.20199 6.96596 7.06975 7.10897 7.76281 8.15121 9.06582 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.005562 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.540678 B = 5033.387622 C = 6418.409351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.034 4.034 3 Si 0.949 3.051 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.273 1.273 7 C -0.259 4.259 8 H 0.081 0.919 9 N -0.581 5.581 10 C 0.187 3.813 11 C -0.099 4.099 12 C 0.492 3.508 13 O -0.547 6.547 14 O -0.521 6.521 15 C 0.210 3.790 16 C 0.289 3.711 17 N -0.515 5.515 18 C 0.018 3.982 19 C -0.090 4.090 20 C -0.117 4.117 21 C -0.101 4.101 22 C -0.114 4.114 23 C 0.031 3.969 24 N -0.548 5.548 25 C 0.475 3.525 26 F -0.187 7.187 27 F -0.183 7.183 28 H 0.250 0.750 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.419 0.581 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.140 0.860 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 -17.996 1.269 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.230 4.230 3 Si 0.778 3.222 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.198 1.198 7 C -0.388 4.388 8 H 0.098 0.902 9 N -0.299 5.299 10 C 0.062 3.938 11 C -0.139 4.139 12 C 0.337 3.663 13 O -0.438 6.438 14 O -0.335 6.335 15 C 0.080 3.920 16 C 0.020 3.980 17 N -0.234 5.234 18 C -0.099 4.099 19 C -0.110 4.110 20 C -0.137 4.137 21 C -0.120 4.120 22 C -0.135 4.135 23 C -0.075 4.075 24 N -0.251 5.251 25 C 0.341 3.659 26 F -0.168 7.168 27 F -0.165 7.165 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.279 0.721 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.146 0.854 37 H 0.179 0.821 38 H 0.184 0.816 39 H 0.158 0.842 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.033 -17.176 1.302 17.225 hybrid contribution -1.247 0.902 -0.199 1.552 sum -1.280 -16.274 1.103 16.361 Atomic orbital electron populations 1.70260 1.06374 1.25731 1.52958 1.25295 0.95631 1.00477 1.01573 0.85523 0.78853 0.80690 0.77114 1.21486 1.23143 1.19761 1.19468 1.03341 0.87483 1.28487 0.90153 1.44706 1.15063 1.08935 1.61168 1.20872 0.81261 1.00611 0.91081 1.22031 0.87673 1.01410 1.02784 1.23943 0.87232 0.70461 0.84702 1.90594 1.87289 1.46979 1.18902 1.84579 1.19794 1.81417 1.47687 1.20005 0.97945 0.83750 0.90309 1.26100 0.88211 0.86157 0.97490 1.70455 1.28682 1.22966 1.01319 1.19693 0.99410 0.94654 0.96132 1.20301 1.01181 0.98632 0.90886 1.21032 0.96677 0.94432 1.01545 1.21338 0.98182 1.00510 0.91965 1.20422 1.00743 0.95491 0.96805 1.19142 1.03441 1.00001 0.84889 1.46981 1.39898 1.28355 1.09907 1.22386 0.81333 0.81353 0.80791 1.93054 1.54040 1.78596 1.91139 1.93177 1.92172 1.56551 1.74572 0.94085 0.91523 0.93225 0.92078 0.88538 0.72058 0.88544 0.88390 0.85435 0.82101 0.81577 0.84203 0.78071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.62 8.70 21.65 0.19 -50.43 16 2 C -0.03 -1.81 4.90 84.86 0.42 -1.39 16 3 Si 0.95 44.25 29.67 68.60 2.04 46.28 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.26 -13.51 9.64 84.03 0.81 -12.70 16 8 H 0.08 4.27 8.02 -2.91 -0.02 4.25 16 9 N -0.58 -26.80 2.52 -706.33 -1.78 -28.58 16 10 C 0.19 8.76 3.61 86.38 0.31 9.07 16 11 C -0.10 -4.54 4.93 29.85 0.15 -4.39 16 12 C 0.49 20.77 8.33 71.24 0.59 21.37 16 13 O -0.55 -24.76 16.69 21.95 0.37 -24.39 16 14 O -0.52 -17.98 13.42 -51.31 -0.69 -18.67 16 15 C 0.21 7.74 5.63 85.63 0.48 8.22 16 16 C 0.29 10.86 6.74 137.92 0.93 11.79 16 17 N -0.51 -21.72 11.27 -179.96 -2.03 -23.75 16 18 C 0.02 0.65 7.23 39.45 0.29 0.94 16 19 C -0.09 -2.72 10.05 22.25 0.22 -2.49 16 20 C -0.12 -2.56 9.96 22.02 0.22 -2.34 16 21 C -0.10 -2.04 10.03 22.31 0.22 -1.82 16 22 C -0.11 -2.85 9.57 22.32 0.21 -2.64 16 23 C 0.03 1.01 6.71 38.86 0.26 1.27 16 24 N -0.55 -17.39 2.64 -523.70 -1.38 -18.77 16 25 C 0.48 11.52 5.96 127.77 0.76 12.28 16 26 F -0.19 -4.64 15.51 44.97 0.70 -3.94 16 27 F -0.18 -5.52 10.14 44.97 0.46 -5.07 16 28 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.07 3.64 5.75 -2.39 -0.01 3.62 16 30 H 0.05 2.15 5.73 -2.39 -0.01 2.13 16 31 H 0.06 2.74 5.46 -2.39 -0.01 2.72 16 32 H 0.10 5.23 6.36 -2.39 -0.02 5.22 16 33 H 0.42 9.69 9.10 -74.05 -0.67 9.01 16 34 H 0.10 3.44 8.03 -2.39 -0.02 3.42 16 35 H 0.10 2.94 6.36 -2.39 -0.02 2.92 16 36 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 38 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.14 2.93 6.93 -2.91 -0.02 2.91 16 40 H 0.20 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -72.73 337.52 4.20 -68.54 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.45 Total: 21.62 kcal Atomic # 6 Polarization: 31.28 SS G_CDS: 5.88 Total: 37.16 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -5.00 Total: -121.52 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -0.32 Total: -43.06 kcal Atomic # 9 Polarization: -10.16 SS G_CDS: 1.15 Total: -9.01 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.04 Total: 46.28 kcal Total: -72.73 4.20 -68.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.913 kcal (2) G-P(sol) polarization free energy of solvation -72.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds