Wall clock time and date at job start Tue Mar 31 2020 22:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86806 * 119.99700 * 2 1 4 4 H 1.48501 * 109.47168 * 270.00225 * 3 2 1 5 5 H 1.48506 * 109.47077 * 29.99946 * 3 2 1 6 6 H 1.48500 * 109.47201 * 150.00115 * 3 2 1 7 7 C 1.38653 * 120.00502 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00457 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00024 * 185.05429 * 9 7 2 11 11 C 1.38898 * 120.06994 * 354.48843 * 10 9 7 12 12 C 1.38080 * 119.93047 * 179.97438 * 11 10 9 13 13 C 1.38321 * 120.06877 * 359.74971 * 12 11 10 14 14 C 1.38276 * 120.13827 * 0.50847 * 13 12 11 15 15 C 1.50697 * 119.96852 * 179.76764 * 14 13 12 16 16 N 1.46505 * 109.47149 * 269.72514 * 15 14 13 17 17 C 1.38774 * 119.99847 * 179.97438 * 16 15 14 18 18 N 1.32587 * 120.15753 * 359.97438 * 17 16 15 19 19 C 1.32264 * 119.99446 * 180.02562 * 18 17 16 20 20 C 1.38283 * 120.32054 * 359.97126 * 19 18 17 21 21 N 1.32109 * 120.31492 * 359.76902 * 20 19 18 22 22 C 1.32752 * 119.99108 * 0.50908 * 21 20 19 23 23 C 1.48310 * 120.15577 * 179.74491 * 22 21 20 24 24 N 1.34098 * 126.68555 * 179.75464 * 23 22 21 25 25 N 1.28982 * 107.26781 * 180.02562 * 24 23 22 26 26 N 1.28726 * 108.95855 * 359.97438 * 25 24 23 27 27 H 0.96998 * 125.33741 * 179.97438 * 26 25 24 28 28 N 1.28880 * 109.33047 * 359.73372 * 26 25 24 29 29 C 1.38126 * 120.07076 * 359.48749 * 14 13 12 30 30 H 0.97000 * 120.00360 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.03053 * 359.95700 * 11 10 9 32 32 H 1.08002 * 119.95934 * 180.02562 * 12 11 10 33 33 H 1.07999 * 119.92990 * 180.27943 * 13 12 11 34 34 H 1.09001 * 109.47856 * 149.72252 * 15 14 13 35 35 H 1.09004 * 109.46939 * 29.72202 * 15 14 13 36 36 H 0.96996 * 119.99769 * 359.97438 * 16 15 14 37 37 H 1.08008 * 119.83426 * 179.97438 * 19 18 17 38 38 H 1.08003 * 119.84264 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.03781 * 180.23458 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0466 -1.4001 5 1 1.4468 2.6528 0.7001 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3349 -2.3684 -0.0005 10 6 2.0703 -3.5045 0.1055 11 6 3.4576 -3.4393 0.0924 12 6 4.2028 -4.5967 0.2010 13 6 3.5691 -5.8196 0.3279 14 6 2.1881 -5.8884 0.3358 15 6 1.5017 -7.2234 0.4689 16 7 1.2722 -7.7895 -0.8627 17 6 0.6499 -9.0228 -0.9945 18 7 0.2622 -9.6918 0.0826 19 6 -0.3302 -10.8673 -0.0467 20 6 -0.5489 -11.4044 -1.3020 21 7 -0.1723 -10.7462 -2.3838 22 6 0.4283 -9.5680 -2.2683 23 6 0.8577 -8.8286 -3.4801 24 7 1.4673 -7.6348 -3.5161 25 7 1.6684 -7.3448 -4.7568 26 7 1.2135 -8.3010 -5.4887 27 1 1.2414 -8.3276 -6.4580 28 7 0.7196 -9.2198 -4.7318 29 6 1.4370 -4.7343 0.2277 30 1 -0.4851 0.8400 0.0004 31 1 3.9529 -2.4843 -0.0028 32 1 5.2816 -4.5464 0.1913 33 1 4.1542 -6.7230 0.4171 34 1 0.5465 -7.0918 0.9773 35 1 2.1311 -7.8995 1.0476 36 1 1.5552 -7.3022 -1.6521 37 1 -0.6445 -11.4102 0.8325 38 1 -1.0337 -12.3647 -1.3987 39 1 0.3584 -4.7883 0.2378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609496027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:53 Heat of formation + Delta-G solvation = 163.588060 kcal Electronic energy + Delta-G solvation = -27534.947327 eV Core-core repulsion = 23481.192580 eV Total energy + Delta-G solvation = -4053.754748 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.58818 -42.00193 -40.82994 -38.73822 -37.10165 -35.83582 -35.15897 -34.32681 -33.94022 -32.66471 -31.05870 -30.33091 -27.63105 -27.17467 -26.54788 -25.55152 -24.02326 -23.54209 -23.24662 -22.36146 -20.49767 -19.69559 -19.06706 -18.52611 -18.40287 -18.28864 -17.77474 -16.81703 -16.57895 -16.21448 -16.05032 -15.97579 -15.59233 -15.43202 -15.15541 -15.03761 -14.46406 -14.19393 -14.00254 -13.80739 -13.50535 -13.39955 -13.00995 -12.73415 -12.57986 -12.51949 -12.48006 -12.36218 -12.29840 -12.23841 -12.11637 -12.00045 -11.21035 -10.98211 -10.81430 -10.20620 -9.74362 -9.03145 -8.83081 -8.46820 -6.15430 -0.53715 0.03511 0.30571 0.38330 0.71205 1.10759 1.31358 1.34964 1.44119 1.52657 1.99507 2.17540 2.46022 2.82512 2.83250 2.89453 3.16271 3.28494 3.44979 3.55710 3.79041 3.87669 4.09103 4.19284 4.24381 4.30649 4.44233 4.45950 4.53105 4.53979 4.67140 4.72558 5.02490 5.11927 5.25850 5.28827 5.53054 5.61838 5.70234 5.71840 5.94235 6.01384 6.04397 6.18052 6.60992 6.86663 6.97732 7.08373 7.78398 8.76479 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013818 B = 0.002705 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.883709 B =10348.302864 C =11177.640589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.233 4.233 12 C -0.070 4.070 13 C -0.169 4.169 14 C -0.062 4.062 15 C 0.181 3.819 16 N -0.697 5.697 17 C 0.388 3.612 18 N -0.515 5.515 19 C 0.143 3.857 20 C -0.014 4.014 21 N -0.388 5.388 22 C 0.038 3.962 23 C 0.226 3.774 24 N -0.308 5.308 25 N -0.046 5.046 26 N -0.195 5.195 27 H 0.497 0.503 28 N -0.272 5.272 29 C -0.181 4.181 30 H 0.272 0.728 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.423 0.577 37 H 0.222 0.778 38 H 0.214 0.786 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.590 -23.592 -4.948 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.063 3.937 11 C -0.253 4.253 12 C -0.088 4.088 13 C -0.188 4.188 14 C -0.063 4.063 15 C 0.057 3.943 16 N -0.333 5.333 17 C 0.145 3.855 18 N -0.238 5.238 19 C -0.022 4.022 20 C -0.180 4.180 21 N -0.103 5.103 22 C -0.109 4.109 23 C -0.055 4.055 24 N -0.181 5.181 25 N -0.041 5.041 26 N -0.047 5.047 27 H 0.356 0.644 28 N -0.125 5.125 29 C -0.201 4.201 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.269 0.731 37 H 0.239 0.761 38 H 0.231 0.769 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.546 -22.711 -5.166 23.560 hybrid contribution -0.138 1.049 -0.818 1.337 sum 3.409 -21.663 -5.984 22.731 Atomic orbital electron populations 1.70191 1.08078 1.28756 1.48971 1.26597 0.96832 1.02764 0.95882 0.84591 0.77876 0.74542 0.79228 1.18875 1.19642 1.17470 1.21836 0.92565 0.81372 1.53123 0.87945 1.83948 1.35937 1.12573 1.81487 1.19831 0.91662 0.87789 0.94396 1.21364 0.92966 1.00397 1.10548 1.21158 1.00423 0.91154 0.96087 1.20990 0.93125 0.98265 1.06390 1.19529 0.94081 0.92905 0.99780 1.20158 1.00103 0.90071 0.83919 1.45559 1.60296 1.16770 1.10654 1.19184 0.89448 0.87488 0.89337 1.68293 1.16135 1.10306 1.29101 1.24573 0.88028 0.88827 1.00775 1.24097 1.03378 1.03014 0.87546 1.68002 1.03915 1.03437 1.34930 1.17809 1.10651 0.95790 0.86682 1.23113 0.99838 0.91176 0.91347 1.75413 1.18160 1.13447 1.11107 1.78889 1.15036 1.13758 0.96435 1.47855 1.34505 1.08559 1.13742 0.64377 1.75055 1.19224 1.16174 1.02074 1.20218 0.99281 0.90353 1.10276 0.91892 0.86044 0.83308 0.83591 0.91055 0.88612 0.73113 0.76146 0.76924 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.36 13.67 21.61 0.30 -57.07 16 2 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 3 Si 1.02 43.21 29.55 68.60 2.03 45.24 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.41 -24.28 9.49 67.92 0.64 -23.64 16 8 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 9 O -0.23 -14.24 9.76 -22.75 -0.22 -14.46 16 10 C 0.11 5.74 6.65 22.58 0.15 5.89 16 11 C -0.23 -10.16 9.17 22.39 0.21 -9.96 16 12 C -0.07 -2.39 10.04 22.25 0.22 -2.17 16 13 C -0.17 -5.30 9.70 22.30 0.22 -5.08 16 14 C -0.06 -2.16 5.25 -19.88 -0.10 -2.27 16 15 C 0.18 5.19 5.84 85.63 0.50 5.69 16 16 N -0.70 -20.69 5.63 -347.79 -1.96 -22.65 16 17 C 0.39 10.57 7.49 133.38 1.00 11.57 16 18 N -0.51 -11.65 9.73 -191.96 -1.87 -13.52 16 19 C 0.14 1.98 11.21 84.64 0.95 2.93 16 20 C -0.01 -0.21 11.20 84.66 0.95 0.74 16 21 N -0.39 -9.01 10.44 -183.80 -1.92 -10.93 16 22 C 0.04 1.05 6.78 42.19 0.29 1.33 16 23 C 0.23 6.42 8.01 137.30 1.10 7.52 16 24 N -0.31 -9.32 9.47 -52.24 -0.49 -9.81 16 25 N -0.05 -1.19 13.47 37.02 0.50 -0.70 16 26 N -0.19 -3.57 7.90 37.02 0.29 -3.28 16 27 H 0.50 3.64 8.96 -347.53 -3.12 0.53 16 28 N -0.27 -6.54 12.39 -52.19 -0.65 -7.18 16 29 C -0.18 -7.98 9.65 22.39 0.22 -7.77 16 30 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 31 H 0.12 5.34 5.64 -2.91 -0.02 5.32 16 32 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 33 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.07 2.09 8.08 -2.39 -0.02 2.08 16 35 H 0.10 2.34 8.08 -2.39 -0.02 2.32 16 36 H 0.42 13.71 5.02 -92.71 -0.47 13.25 16 37 H 0.22 0.83 8.06 -2.91 -0.02 0.80 16 38 H 0.21 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -82.56 348.86 0.39 -82.17 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -2.42 Total: 28.27 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 6.80 Total: -16.08 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -5.80 Total: -125.14 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.22 Total: -14.46 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -82.56 0.39 -82.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.762 kcal (2) G-P(sol) polarization free energy of solvation -82.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds