Wall clock time and date at job start Tue Mar 31 2020 22:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86801 * 120.00363 * 2 1 4 4 H 1.48497 * 109.47274 * 239.99848 * 3 2 1 5 5 H 1.48500 * 109.46579 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47171 * 119.99494 * 3 2 1 7 7 C 1.38656 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99843 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00131 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99687 * 185.05578 * 9 7 2 11 11 C 1.38896 * 120.07549 * 354.48760 * 10 9 7 12 12 C 1.38071 * 119.93392 * 179.97438 * 11 10 9 13 13 C 1.38328 * 120.06958 * 359.75113 * 12 11 10 14 14 C 1.38275 * 120.13418 * 0.50299 * 13 12 11 15 15 C 1.50702 * 119.96153 * 179.76630 * 14 13 12 16 16 N 1.46497 * 109.47575 * 269.72583 * 15 14 13 17 17 C 1.38977 * 120.00388 * 180.02562 * 16 15 14 18 18 C 1.39589 * 120.04944 * 0.02562 * 17 16 15 19 19 C 1.38322 * 117.99578 * 179.97438 * 18 17 16 20 20 C 1.39876 * 117.97645 * 0.02562 * 19 18 17 21 21 C 1.48405 * 120.09754 * 179.97438 * 20 19 18 22 22 N 1.34068 * 126.67598 * 359.97438 * 21 20 19 23 23 N 1.28980 * 107.26336 * 179.76393 * 22 21 20 24 24 N 1.28729 * 108.95094 * 0.39128 * 23 22 21 25 25 H 0.97005 * 125.33552 * 179.86766 * 24 23 22 26 26 N 1.28865 * 109.32334 * 359.60217 * 24 23 22 27 27 N 1.32560 * 119.80610 * 0.24994 * 20 19 18 28 28 N 1.28356 * 122.14126 * 359.46711 * 27 20 19 29 29 C 1.38124 * 120.07232 * 359.49620 * 14 13 12 30 30 H 0.97000 * 119.99612 * 0.02562 * 1 2 3 31 31 H 1.08008 * 120.02861 * 359.95919 * 11 10 9 32 32 H 1.08004 * 119.96610 * 180.02562 * 12 11 10 33 33 H 1.07995 * 119.93044 * 180.27707 * 13 12 11 34 34 H 1.09004 * 109.46567 * 149.72641 * 15 14 13 35 35 H 1.09000 * 109.47353 * 29.73103 * 15 14 13 36 36 H 0.97003 * 119.99961 * 0.02562 * 16 15 14 37 37 H 1.07993 * 121.00157 * 0.02562 * 18 17 16 38 38 H 1.08003 * 121.01164 * 179.97438 * 19 18 17 39 39 H 1.08000 * 120.03617 * 180.22654 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6963 -1.2124 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4573 -3.4395 0.0957 12 6 4.2023 -4.5968 0.2054 13 6 3.5684 -5.8197 0.3323 14 6 2.1873 -5.8884 0.3393 15 6 1.5008 -7.2233 0.4724 16 7 1.2722 -7.7900 -0.8590 17 6 0.6482 -9.0247 -0.9910 18 6 0.2382 -9.7256 0.1444 19 6 -0.3791 -10.9502 -0.0363 20 6 -0.5536 -11.4103 -1.3456 21 6 -1.2096 -12.7181 -1.5937 22 7 -1.6837 -13.5645 -0.6683 23 7 -2.1781 -14.5782 -1.2941 24 7 -2.0252 -14.4030 -2.5602 25 1 -2.3099 -15.0220 -3.2507 26 7 -1.4396 -13.2738 -2.7668 27 7 -0.1263 -10.6772 -2.3641 28 7 0.4417 -9.5386 -2.1950 29 6 1.4364 -4.7342 0.2299 30 1 -0.4849 0.8401 -0.0004 31 1 3.9528 -2.4845 0.0004 32 1 5.2811 -4.5468 0.1966 33 1 4.1533 -6.7231 0.4224 34 1 0.5452 -7.0913 0.9801 35 1 2.1297 -7.8991 1.0519 36 1 1.5565 -7.3034 -1.6486 37 1 0.3973 -9.3235 1.1339 38 1 -0.7154 -11.5338 0.8080 39 1 0.3578 -4.7881 0.2391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609496055.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:45 Heat of formation + Delta-G solvation = 192.138132 kcal Electronic energy + Delta-G solvation = -26208.772167 eV Core-core repulsion = 22156.255444 eV Total energy + Delta-G solvation = -4052.516724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.76384 -41.10803 -39.29558 -37.42000 -36.02633 -34.83568 -33.97182 -32.92395 -32.41294 -31.78194 -29.95246 -29.11021 -26.58582 -25.60579 -25.19813 -24.41238 -23.98744 -22.47774 -21.80471 -20.88138 -19.62643 -18.55788 -17.65513 -17.46866 -17.37002 -17.04171 -16.95314 -15.57565 -15.21796 -14.96529 -14.76762 -14.56205 -14.40882 -14.14472 -13.75307 -13.71397 -13.57674 -13.17178 -12.70978 -12.57641 -12.51842 -11.88128 -11.75317 -11.70207 -11.56287 -11.43939 -11.39920 -10.96551 -10.92823 -10.82766 -10.63789 -10.53656 -10.24702 -9.79469 -9.48825 -8.94501 -8.37636 -8.16237 -7.41620 -6.54414 -4.14208 0.41254 0.67771 0.86852 1.73316 1.91375 2.00392 2.17721 2.87710 3.07670 3.08370 3.11646 3.25315 3.51594 3.73904 3.88074 4.30429 4.38668 4.45322 4.65339 4.70608 4.77765 4.87433 4.98196 5.05613 5.15866 5.32626 5.46444 5.51909 5.58533 5.65875 5.74554 5.79019 5.98480 6.05006 6.15527 6.43963 6.70454 6.73520 6.90728 7.04998 7.18717 7.27355 7.36714 7.61232 7.81844 7.89050 8.60554 8.90592 9.57685 10.62967 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026939 B = 0.001701 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.151156 B =16453.503698 C =16973.207982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.149 3.851 11 C -0.222 4.222 12 C -0.076 4.076 13 C -0.193 4.193 14 C -0.077 4.077 15 C 0.169 3.831 16 N -0.693 5.693 17 C 0.360 3.640 18 C -0.182 4.182 19 C -0.036 4.036 20 C 0.067 3.933 21 C 0.239 3.761 22 N -0.264 5.264 23 N -0.050 5.050 24 N -0.228 5.228 25 H 0.477 0.523 26 N -0.265 5.265 27 N -0.155 5.155 28 N -0.300 5.300 29 C -0.168 4.168 30 H 0.272 0.728 31 H 0.129 0.871 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.416 0.584 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 -23.173 -0.099 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.095 3.905 11 C -0.242 4.242 12 C -0.094 4.094 13 C -0.213 4.213 14 C -0.078 4.078 15 C 0.046 3.954 16 N -0.323 5.323 17 C 0.117 3.883 18 C -0.216 4.216 19 C -0.065 4.065 20 C -0.084 4.084 21 C -0.043 4.043 22 N -0.139 5.139 23 N -0.045 5.045 24 N -0.075 5.075 25 H 0.331 0.669 26 N -0.118 5.118 27 N -0.001 5.001 28 N -0.155 5.155 29 C -0.188 4.188 30 H 0.082 0.918 31 H 0.146 0.854 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.253 0.747 37 H 0.174 0.826 38 H 0.177 0.823 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.438 -23.182 -1.332 23.224 hybrid contribution 0.520 0.951 0.659 1.269 sum 0.082 -22.231 -0.673 22.241 Atomic orbital electron populations 1.70023 1.05994 1.27989 1.45346 1.25307 0.95861 0.98904 0.96337 0.85769 0.78732 0.79643 0.79243 1.19435 1.20203 1.19430 1.21285 0.91790 0.80718 1.53304 0.89031 1.83981 1.34287 1.11432 1.78011 1.19315 0.90273 0.88112 0.92779 1.21268 0.93846 0.99180 1.09867 1.20753 0.98671 0.92233 0.97751 1.20462 0.93226 0.97218 1.10344 1.19074 0.93476 0.92311 1.02919 1.20391 0.99989 0.92176 0.82884 1.44837 1.60888 1.16531 1.10043 1.20277 0.88726 0.87622 0.91699 1.21810 1.03743 0.96085 0.99920 1.22021 0.92874 0.94587 0.97060 1.18975 1.05112 0.92471 0.91876 1.22777 1.00806 0.96169 0.84546 1.76059 1.12870 0.98907 1.26065 1.78900 1.16179 1.18853 0.90569 1.47819 1.37354 1.14381 1.07915 0.66886 1.75164 1.14428 0.96844 1.25325 1.72968 1.01586 0.98081 1.27436 1.73197 1.17212 1.06010 1.19055 1.20071 0.99419 0.89866 1.09463 0.91816 0.85378 0.87176 0.87431 0.90617 0.90713 0.74675 0.82629 0.82332 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.47 13.67 55.48 0.76 -23.71 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.81 29.55 -169.99 -5.02 14.79 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.58 9.49 30.89 0.29 -10.29 16 8 H 0.09 2.25 5.20 -52.48 -0.27 1.98 16 9 O -0.17 -4.73 9.76 0.05 0.00 -4.73 16 10 C 0.15 3.34 6.65 -39.11 -0.26 3.08 16 11 C -0.22 -4.45 9.17 -39.40 -0.36 -4.81 16 12 C -0.08 -1.25 10.04 -39.61 -0.40 -1.65 16 13 C -0.19 -2.88 9.70 -39.53 -0.38 -3.26 16 14 C -0.08 -1.16 5.25 -104.65 -0.55 -1.70 16 15 C 0.17 1.88 5.04 -5.19 -0.03 1.86 16 16 N -0.69 -8.19 5.72 -61.45 -0.35 -8.54 16 17 C 0.36 4.36 7.74 -154.77 -1.20 3.17 16 18 C -0.18 -1.74 9.40 -39.05 -0.37 -2.11 16 19 C -0.04 -0.34 9.84 -38.94 -0.38 -0.73 16 20 C 0.07 0.81 6.84 -82.75 -0.57 0.24 16 21 C 0.24 2.73 8.05 -156.29 -1.26 1.47 16 22 N -0.26 -2.84 12.28 32.15 0.39 -2.44 16 23 N -0.05 -0.45 13.47 60.35 0.81 0.37 16 24 N -0.23 -1.55 7.90 60.35 0.48 -1.07 16 25 H 0.48 0.84 8.96 -340.36 -3.05 -2.21 16 26 N -0.27 -2.75 12.39 32.16 0.40 -2.35 16 27 N -0.16 -2.20 11.44 33.38 0.38 -1.82 16 28 N -0.30 -4.31 11.53 31.25 0.36 -3.95 16 29 C -0.17 -3.17 9.65 -39.39 -0.38 -3.55 16 30 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.13 2.59 5.64 -52.48 -0.30 2.29 16 32 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 35 H 0.07 0.68 7.90 -51.93 -0.41 0.27 16 36 H 0.42 5.24 8.59 -40.82 -0.35 4.89 16 37 H 0.16 1.07 6.82 -52.49 -0.36 0.71 16 38 H 0.16 1.11 7.95 -52.48 -0.42 0.70 16 39 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -32.96 352.81 -8.38 -41.33 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.97 Total: 4.08 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -5.93 Total: -17.29 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 3.23 Total: -43.51 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: 0.00 Total: -4.73 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.96 -8.38 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496055.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.473 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds