Wall clock time and date at job start Tue Mar 31 2020 22:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86801 * 120.00363 * 2 1 4 4 H 1.48497 * 109.47274 * 239.99848 * 3 2 1 5 5 H 1.48500 * 109.46579 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47171 * 119.99494 * 3 2 1 7 7 C 1.38656 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99843 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00131 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99687 * 185.05578 * 9 7 2 11 11 C 1.38896 * 120.07549 * 354.48760 * 10 9 7 12 12 C 1.38071 * 119.93392 * 179.97438 * 11 10 9 13 13 C 1.38328 * 120.06958 * 359.75113 * 12 11 10 14 14 C 1.38275 * 120.13418 * 0.50299 * 13 12 11 15 15 C 1.50702 * 119.96153 * 179.76630 * 14 13 12 16 16 N 1.46497 * 109.47575 * 269.72583 * 15 14 13 17 17 C 1.38977 * 120.00388 * 180.02562 * 16 15 14 18 18 C 1.39589 * 120.04944 * 0.02562 * 17 16 15 19 19 C 1.38322 * 117.99578 * 179.97438 * 18 17 16 20 20 C 1.39876 * 117.97645 * 0.02562 * 19 18 17 21 21 C 1.48405 * 120.09754 * 179.97438 * 20 19 18 22 22 N 1.34068 * 126.67598 * 359.97438 * 21 20 19 23 23 N 1.28980 * 107.26336 * 179.76393 * 22 21 20 24 24 N 1.28729 * 108.95094 * 0.39128 * 23 22 21 25 25 H 0.97005 * 125.33552 * 179.86766 * 24 23 22 26 26 N 1.28865 * 109.32334 * 359.60217 * 24 23 22 27 27 N 1.32560 * 119.80610 * 0.24994 * 20 19 18 28 28 N 1.28356 * 122.14126 * 359.46711 * 27 20 19 29 29 C 1.38124 * 120.07232 * 359.49620 * 14 13 12 30 30 H 0.97000 * 119.99612 * 0.02562 * 1 2 3 31 31 H 1.08008 * 120.02861 * 359.95919 * 11 10 9 32 32 H 1.08004 * 119.96610 * 180.02562 * 12 11 10 33 33 H 1.07995 * 119.93044 * 180.27707 * 13 12 11 34 34 H 1.09004 * 109.46567 * 149.72641 * 15 14 13 35 35 H 1.09000 * 109.47353 * 29.73103 * 15 14 13 36 36 H 0.97003 * 119.99961 * 0.02562 * 16 15 14 37 37 H 1.07993 * 121.00157 * 0.02562 * 18 17 16 38 38 H 1.08003 * 121.01164 * 179.97438 * 19 18 17 39 39 H 1.08000 * 120.03617 * 180.22654 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6963 -1.2124 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4573 -3.4395 0.0957 12 6 4.2023 -4.5968 0.2054 13 6 3.5684 -5.8197 0.3323 14 6 2.1873 -5.8884 0.3393 15 6 1.5008 -7.2233 0.4724 16 7 1.2722 -7.7900 -0.8590 17 6 0.6482 -9.0247 -0.9910 18 6 0.2382 -9.7256 0.1444 19 6 -0.3791 -10.9502 -0.0363 20 6 -0.5536 -11.4103 -1.3456 21 6 -1.2096 -12.7181 -1.5937 22 7 -1.6837 -13.5645 -0.6683 23 7 -2.1781 -14.5782 -1.2941 24 7 -2.0252 -14.4030 -2.5602 25 1 -2.3099 -15.0220 -3.2507 26 7 -1.4396 -13.2738 -2.7668 27 7 -0.1263 -10.6772 -2.3641 28 7 0.4417 -9.5386 -2.1950 29 6 1.4364 -4.7342 0.2299 30 1 -0.4849 0.8401 -0.0004 31 1 3.9528 -2.4845 0.0004 32 1 5.2811 -4.5468 0.1966 33 1 4.1533 -6.7231 0.4224 34 1 0.5452 -7.0913 0.9801 35 1 2.1297 -7.8991 1.0519 36 1 1.5565 -7.3034 -1.6486 37 1 0.3973 -9.3235 1.1339 38 1 -0.7154 -11.5338 0.8080 39 1 0.3578 -4.7881 0.2391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609496055.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:44 Heat of formation + Delta-G solvation = 167.925838 kcal Electronic energy + Delta-G solvation = -26209.822091 eV Core-core repulsion = 22156.255444 eV Total energy + Delta-G solvation = -4053.566647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.49545 -41.98252 -40.83029 -38.79044 -37.20377 -35.60649 -34.77490 -34.30701 -33.73446 -32.87152 -31.17014 -30.47792 -27.70604 -27.17140 -26.21832 -25.32037 -24.77010 -23.41482 -23.19767 -22.29675 -20.31844 -19.77430 -19.16709 -18.61721 -18.19764 -18.18780 -17.72749 -16.80463 -16.57658 -16.19773 -16.10891 -15.86703 -15.45108 -15.30807 -15.12602 -14.86806 -14.38871 -14.30913 -14.06276 -13.86273 -13.52021 -13.44140 -13.00955 -12.66081 -12.63774 -12.45763 -12.36144 -12.34032 -12.24757 -12.19388 -12.13774 -11.49952 -11.20666 -11.01831 -10.80631 -10.65058 -9.77365 -9.05992 -9.01514 -8.47102 -6.15534 -0.41049 -0.11346 0.14560 0.36861 0.72137 1.17705 1.35423 1.36373 1.45337 1.51247 1.95791 2.17460 2.43428 2.65112 2.85157 2.97379 3.17050 3.39290 3.55191 3.60612 3.82101 3.92750 3.97099 4.09027 4.10684 4.31941 4.39818 4.43583 4.53563 4.57820 4.73782 4.75400 4.90188 5.01287 5.05871 5.11758 5.27280 5.60043 5.62922 5.70752 5.72881 5.85943 6.01593 6.19154 6.39111 6.97797 7.07588 7.72088 7.78168 8.75602 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026939 B = 0.001701 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.151156 B =16453.503698 C =16973.207982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.413 4.413 8 H 0.102 0.898 9 O -0.233 6.233 10 C 0.107 3.893 11 C -0.235 4.235 12 C -0.075 4.075 13 C -0.165 4.165 14 C -0.061 4.061 15 C 0.173 3.827 16 N -0.697 5.697 17 C 0.350 3.650 18 C -0.168 4.168 19 C -0.031 4.031 20 C 0.065 3.935 21 C 0.224 3.776 22 N -0.274 5.274 23 N -0.049 5.049 24 N -0.199 5.199 25 H 0.496 0.504 26 N -0.281 5.281 27 N -0.190 5.190 28 N -0.336 5.336 29 C -0.179 4.179 30 H 0.272 0.728 31 H 0.117 0.883 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.410 0.590 37 H 0.191 0.809 38 H 0.187 0.813 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.019 -26.077 1.210 26.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.220 4.220 3 Si 0.836 3.164 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.140 6.140 10 C 0.057 3.943 11 C -0.255 4.255 12 C -0.093 4.093 13 C -0.184 4.184 14 C -0.062 4.062 15 C 0.050 3.950 16 N -0.327 5.327 17 C 0.107 3.893 18 C -0.201 4.201 19 C -0.060 4.060 20 C -0.088 4.088 21 C -0.058 4.058 22 N -0.148 5.148 23 N -0.044 5.044 24 N -0.051 5.051 25 H 0.355 0.645 26 N -0.134 5.134 27 N -0.034 5.034 28 N -0.189 5.189 29 C -0.199 4.199 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.163 0.837 33 H 0.170 0.830 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.246 0.754 37 H 0.208 0.792 38 H 0.204 0.796 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.529 -26.171 -0.039 26.216 hybrid contribution -0.009 1.347 0.244 1.369 sum 1.520 -24.824 0.205 24.871 Atomic orbital electron populations 1.70174 1.08002 1.28816 1.48824 1.26561 0.96819 1.02727 0.95926 0.84673 0.77404 0.74405 0.79926 1.18265 1.19828 1.18052 1.21762 0.92488 0.81434 1.53242 0.88045 1.83944 1.35918 1.12587 1.81504 1.19933 0.91645 0.88060 0.94654 1.21380 0.93151 1.00413 1.10527 1.21175 1.00379 0.91406 0.96308 1.21056 0.93327 0.98150 1.05881 1.19439 0.93782 0.92841 1.00148 1.20497 1.01052 0.90399 0.83031 1.44735 1.61440 1.16602 1.09914 1.20402 0.89081 0.87758 0.92065 1.22168 1.02018 0.95416 1.00462 1.22330 0.92175 0.94737 0.96791 1.19271 1.04416 0.92453 0.92699 1.22811 1.01571 0.96421 0.84965 1.76039 1.13349 0.99122 1.26338 1.78840 1.16023 1.18417 0.91153 1.47847 1.35599 1.13656 1.07984 0.64494 1.75121 1.14952 0.97856 1.25476 1.72884 1.03075 0.98621 1.28776 1.73060 1.18503 1.06604 1.20770 1.20300 0.99604 0.90160 1.09798 0.91899 0.86515 0.83676 0.83004 0.89464 0.86970 0.75445 0.79235 0.79606 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.77 13.67 21.61 0.30 -55.47 16 2 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 3 Si 1.02 42.04 29.55 68.60 2.03 44.06 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.41 -23.44 9.49 67.92 0.64 -22.80 16 8 H 0.10 5.24 5.20 -2.91 -0.02 5.23 16 9 O -0.23 -13.55 9.76 -22.75 -0.22 -13.78 16 10 C 0.11 5.00 6.65 22.58 0.15 5.15 16 11 C -0.24 -9.45 9.17 22.39 0.21 -9.25 16 12 C -0.07 -2.23 10.04 22.25 0.22 -2.01 16 13 C -0.17 -4.16 9.70 22.30 0.22 -3.95 16 14 C -0.06 -1.66 5.25 -19.88 -0.10 -1.77 16 15 C 0.17 3.13 5.04 85.63 0.43 3.57 16 16 N -0.70 -14.64 5.72 -348.33 -1.99 -16.63 16 17 C 0.35 7.73 7.74 133.15 1.03 8.76 16 18 C -0.17 -2.61 9.40 22.62 0.21 -2.40 16 19 C -0.03 -0.51 9.84 22.69 0.22 -0.29 16 20 C 0.06 1.46 6.84 42.14 0.29 1.75 16 21 C 0.22 4.83 8.05 137.35 1.11 5.93 16 22 N -0.27 -5.39 12.28 -52.20 -0.64 -6.03 16 23 N -0.05 -0.79 13.47 37.02 0.50 -0.29 16 24 N -0.20 -2.37 7.90 37.02 0.29 -2.08 16 25 H 0.50 0.79 8.96 -347.53 -3.12 -2.32 16 26 N -0.28 -5.49 12.39 -52.15 -0.65 -6.14 16 27 N -0.19 -5.30 11.44 -48.31 -0.55 -5.86 16 28 N -0.34 -9.44 11.53 -55.05 -0.63 -10.08 16 29 C -0.18 -6.77 9.65 22.39 0.22 -6.56 16 30 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.12 4.86 5.64 -2.91 -0.02 4.84 16 32 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.09 1.45 7.90 -2.39 -0.02 1.43 16 35 H 0.11 1.30 7.90 -2.39 -0.02 1.28 16 36 H 0.41 9.68 8.59 -92.71 -0.80 8.88 16 37 H 0.19 1.56 6.82 -2.91 -0.02 1.54 16 38 H 0.19 1.93 7.95 -2.91 -0.02 1.90 16 39 H 0.11 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -79.31 352.81 0.99 -78.32 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -2.74 Total: 18.62 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 5.31 Total: -24.65 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -3.38 Total: -102.58 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.22 Total: -13.78 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -79.31 0.99 -78.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496055.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.250 kcal (2) G-P(sol) polarization free energy of solvation -79.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds