Wall clock time and date at job start Tue Mar 31 2020 22:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.38580 * 119.99776 * 180.02562 * 15 14 13 17 17 C 1.39461 * 120.49457 * 359.72142 * 16 15 14 18 18 C 1.39191 * 118.22562 * 179.73760 * 17 16 15 19 19 C 1.48424 * 120.50722 * 180.25967 * 18 17 16 20 20 N 1.34063 * 126.67776 * 0.31023 * 19 18 17 21 21 N 1.28983 * 107.26655 * 179.97438 * 20 19 18 22 22 N 1.28728 * 108.94914 * 359.97438 * 21 20 19 23 23 H 0.96995 * 125.34003 * 180.02562 * 22 21 20 24 24 N 1.28869 * 109.32235 * 359.77306 * 22 21 20 25 25 N 1.33356 * 118.98594 * 0.53913 * 18 17 16 26 26 C 1.31624 * 120.89098 * 359.72240 * 25 18 17 27 27 N 1.31807 * 121.96729 * 0.02562 * 26 25 18 28 28 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 29 29 C 1.38101 * 120.07230 * 0.04164 * 28 13 12 30 30 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 33 33 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 34 34 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 35 35 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 36 36 H 1.08003 * 120.88964 * 0.02562 * 17 16 15 37 37 H 1.08005 * 119.01722 * 179.97438 * 26 25 18 38 38 H 1.07999 * 119.96698 * 180.02562 * 28 13 12 39 39 H 1.07992 * 120.03608 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3805 -8.7877 1.0374 17 6 5.8764 -9.4553 -0.0821 18 6 6.6156 -10.6176 0.1184 19 6 7.1722 -11.3652 -1.0367 20 7 7.0523 -11.0424 -2.3323 21 7 7.6765 -11.9444 -3.0109 22 7 8.1765 -12.8079 -2.1977 23 1 8.6940 -13.5869 -2.4550 24 7 7.8861 -12.4724 -0.9878 25 7 6.8113 -11.0522 1.3639 26 6 6.3211 -10.3952 2.3937 27 7 5.6205 -9.2886 2.2462 28 6 4.2024 -4.5970 -0.2043 29 6 3.4573 -3.4394 -0.0951 30 1 -0.4850 0.8400 0.0004 31 1 0.3579 -4.7892 -0.2301 32 1 1.6954 -6.8451 -0.4339 33 1 3.8358 -7.8156 -1.0337 34 1 5.3321 -6.8566 -0.9342 35 1 4.2983 -7.1670 1.6758 36 1 5.6958 -9.0780 -1.0778 37 1 6.4976 -10.7747 3.3894 38 1 5.2812 -4.5470 -0.1947 39 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609496172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:43 Heat of formation + Delta-G solvation = 182.007715 kcal Electronic energy + Delta-G solvation = -26379.080722 eV Core-core repulsion = 22326.124711 eV Total energy + Delta-G solvation = -4052.956011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.85860 -41.05075 -39.25379 -37.41605 -35.96422 -34.98054 -34.23090 -32.65128 -32.31464 -31.36544 -30.33036 -29.42327 -26.13005 -25.82008 -25.28197 -24.78478 -23.41824 -22.17367 -22.11553 -20.70376 -19.77887 -18.20563 -18.07757 -17.79130 -17.54670 -17.05569 -15.61515 -15.43308 -15.31455 -15.06233 -14.78073 -14.64364 -14.48117 -14.14461 -14.03799 -13.70750 -13.68783 -13.27035 -12.84193 -12.70876 -12.42598 -11.98374 -11.77090 -11.65323 -11.54704 -11.43437 -11.01166 -10.99267 -10.94131 -10.78381 -10.72030 -10.51409 -9.83181 -9.48461 -9.47082 -8.95451 -8.35143 -8.25580 -7.40045 -6.56771 -4.15596 0.25823 0.80059 1.09569 1.81431 1.95157 2.02587 2.08279 2.95025 3.03427 3.07481 3.11958 3.12661 3.65961 3.75231 3.87464 4.29553 4.41804 4.49284 4.63059 4.85759 4.97173 5.00975 5.11888 5.14326 5.24041 5.30491 5.37410 5.56100 5.60717 5.71215 5.94326 6.02611 6.07184 6.27802 6.50850 6.54329 6.74200 6.89526 7.05233 7.10178 7.20052 7.30504 7.46488 7.65651 7.74008 7.87702 8.06874 8.88389 9.55607 10.60498 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022495 B = 0.001808 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.419363 B =15480.270828 C =15900.994938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.163 3.837 11 C -0.196 4.196 12 C -0.051 4.051 13 C -0.219 4.219 14 C 0.179 3.821 15 N -0.693 5.693 16 C 0.445 3.555 17 C -0.247 4.247 18 C 0.274 3.726 19 C 0.217 3.783 20 N -0.252 5.252 21 N -0.048 5.048 22 N -0.228 5.228 23 H 0.477 0.523 24 N -0.254 5.254 25 N -0.545 5.545 26 C 0.346 3.654 27 N -0.574 5.574 28 C -0.047 4.047 29 C -0.238 4.238 30 H 0.272 0.728 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.413 0.587 36 H 0.155 0.845 37 H 0.201 0.799 38 H 0.109 0.891 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.393 -21.795 -1.586 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.073 6.073 10 C 0.107 3.893 11 C -0.215 4.215 12 C -0.069 4.069 13 C -0.221 4.221 14 C 0.057 3.943 15 N -0.324 5.324 16 C 0.199 3.801 17 C -0.279 4.279 18 C 0.130 3.870 19 C -0.064 4.064 20 N -0.126 5.126 21 N -0.043 5.043 22 N -0.074 5.074 23 H 0.332 0.668 24 N -0.106 5.106 25 N -0.266 5.266 26 C 0.056 3.944 27 N -0.299 5.299 28 C -0.066 4.066 29 C -0.257 4.257 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.172 0.828 37 H 0.218 0.782 38 H 0.127 0.873 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.166 -21.902 -1.528 26.128 hybrid contribution 0.471 0.908 -0.203 1.043 sum 14.637 -20.994 -1.731 25.651 Atomic orbital electron populations 1.70032 1.06027 1.27968 1.45111 1.25336 0.95877 0.98989 0.96262 0.85683 0.78947 0.79832 0.78831 1.19750 1.20155 1.19105 1.21369 0.91897 0.80669 1.53050 0.88849 1.83977 1.34583 1.11608 1.77165 1.19454 0.90331 0.88054 0.91415 1.20213 0.99734 0.90261 1.11303 1.20523 0.92690 0.96881 0.96851 1.19032 0.93475 0.93076 1.16494 1.20224 0.98752 0.93223 0.82120 1.45172 1.54073 1.22733 1.10441 1.18497 0.86626 0.86497 0.88513 1.22000 1.06117 0.98695 1.01052 1.17582 0.91816 0.89571 0.88034 1.23079 0.99186 0.92204 0.91911 1.76134 1.16373 1.18351 1.01734 1.78973 1.08132 0.96884 1.20280 1.47886 1.36090 1.22091 1.01342 0.66801 1.75148 1.16127 1.15339 1.04018 1.68223 1.25631 1.34642 0.98094 1.24610 0.86652 0.85417 0.97728 1.67991 1.21333 1.16181 1.24398 1.20633 0.98395 0.91647 0.95879 1.21158 0.93765 0.99011 1.11776 0.91807 0.86307 0.86894 0.91205 0.91251 0.74976 0.82781 0.78250 0.87333 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.35 13.67 55.48 0.76 -23.59 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.81 29.55 -169.99 -5.02 14.78 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.39 -10.56 9.49 30.89 0.29 -10.26 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.67 9.76 0.05 0.00 -4.67 16 10 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.20 -3.82 9.99 -39.39 -0.39 -4.21 16 12 C -0.05 -0.80 9.69 -39.61 -0.38 -1.19 16 13 C -0.22 -3.23 5.25 -104.58 -0.55 -3.78 16 14 C 0.18 2.06 5.05 -5.19 -0.03 2.03 16 15 N -0.69 -8.06 5.70 -61.47 -0.35 -8.41 16 16 C 0.44 5.32 7.71 -154.77 -1.19 4.13 16 17 C -0.25 -2.81 9.05 -38.77 -0.35 -3.16 16 18 C 0.27 3.26 6.79 -82.66 -0.56 2.69 16 19 C 0.22 2.47 8.06 -156.29 -1.26 1.21 16 20 N -0.25 -2.82 12.30 32.15 0.40 -2.43 16 21 N -0.05 -0.43 13.47 60.35 0.81 0.38 16 22 N -0.23 -1.47 7.90 60.35 0.48 -0.99 16 23 H 0.48 0.62 8.96 -340.38 -3.05 -2.43 16 24 N -0.25 -2.47 12.40 32.17 0.40 -2.07 16 25 N -0.55 -6.41 10.40 -11.18 -0.12 -6.53 16 26 C 0.35 3.62 12.28 -92.29 -1.13 2.49 16 27 N -0.57 -6.90 10.46 -13.86 -0.15 -7.05 16 28 C -0.05 -0.76 9.69 -39.61 -0.38 -1.15 16 29 C -0.24 -4.77 9.17 -39.39 -0.36 -5.14 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 32 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.07 0.73 7.91 -51.93 -0.41 0.32 16 34 H 0.07 0.74 7.92 -51.93 -0.41 0.33 16 35 H 0.41 4.98 8.59 -40.82 -0.35 4.63 16 36 H 0.15 1.60 6.76 -52.48 -0.35 1.24 16 37 H 0.20 1.35 8.06 -52.48 -0.42 0.93 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -32.44 352.81 -10.11 -42.55 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.97 Total: 4.64 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -6.66 Total: -11.93 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 2.23 Total: -50.69 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: 0.00 Total: -4.67 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.44 -10.11 -42.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.554 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds