Wall clock time and date at job start Tue Mar 31 2020 22:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.38580 * 119.99776 * 180.02562 * 15 14 13 17 17 C 1.39461 * 120.49457 * 359.72142 * 16 15 14 18 18 C 1.39191 * 118.22562 * 179.73760 * 17 16 15 19 19 C 1.48424 * 120.50722 * 180.25967 * 18 17 16 20 20 N 1.34063 * 126.67776 * 0.31023 * 19 18 17 21 21 N 1.28983 * 107.26655 * 179.97438 * 20 19 18 22 22 N 1.28728 * 108.94914 * 359.97438 * 21 20 19 23 23 H 0.96995 * 125.34003 * 180.02562 * 22 21 20 24 24 N 1.28869 * 109.32235 * 359.77306 * 22 21 20 25 25 N 1.33356 * 118.98594 * 0.53913 * 18 17 16 26 26 C 1.31624 * 120.89098 * 359.72240 * 25 18 17 27 27 N 1.31807 * 121.96729 * 0.02562 * 26 25 18 28 28 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 29 29 C 1.38101 * 120.07230 * 0.04164 * 28 13 12 30 30 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 33 33 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 34 34 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 35 35 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 36 36 H 1.08003 * 120.88964 * 0.02562 * 17 16 15 37 37 H 1.08005 * 119.01722 * 179.97438 * 26 25 18 38 38 H 1.07999 * 119.96698 * 180.02562 * 28 13 12 39 39 H 1.07992 * 120.03608 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3805 -8.7877 1.0374 17 6 5.8764 -9.4553 -0.0821 18 6 6.6156 -10.6176 0.1184 19 6 7.1722 -11.3652 -1.0367 20 7 7.0523 -11.0424 -2.3323 21 7 7.6765 -11.9444 -3.0109 22 7 8.1765 -12.8079 -2.1977 23 1 8.6940 -13.5869 -2.4550 24 7 7.8861 -12.4724 -0.9878 25 7 6.8113 -11.0522 1.3639 26 6 6.3211 -10.3952 2.3937 27 7 5.6205 -9.2886 2.2462 28 6 4.2024 -4.5970 -0.2043 29 6 3.4573 -3.4394 -0.0951 30 1 -0.4850 0.8400 0.0004 31 1 0.3579 -4.7892 -0.2301 32 1 1.6954 -6.8451 -0.4339 33 1 3.8358 -7.8156 -1.0337 34 1 5.3321 -6.8566 -0.9342 35 1 4.2983 -7.1670 1.6758 36 1 5.6958 -9.0780 -1.0778 37 1 6.4976 -10.7747 3.3894 38 1 5.2812 -4.5470 -0.1947 39 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609496172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:43 Heat of formation + Delta-G solvation = 159.562365 kcal Electronic energy + Delta-G solvation = -26380.054026 eV Core-core repulsion = 22326.124711 eV Total energy + Delta-G solvation = -4053.929315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.56423 -41.89720 -40.82878 -38.81602 -37.12379 -35.73490 -35.01827 -34.33828 -33.34351 -32.35776 -31.81004 -30.63307 -27.69246 -26.63120 -26.55641 -25.66843 -24.31609 -23.64351 -23.00736 -22.10220 -20.48210 -19.87477 -19.10168 -18.76486 -18.56479 -18.24667 -16.59773 -16.55619 -16.42938 -16.19306 -15.99340 -15.95604 -15.52042 -15.47847 -15.22400 -14.99305 -14.85578 -14.47567 -14.35922 -13.86178 -13.52415 -13.42475 -13.01693 -12.76698 -12.52209 -12.43487 -12.35618 -12.29393 -12.24559 -12.11521 -11.76106 -11.71028 -11.19158 -10.81532 -10.63780 -10.34033 -9.80096 -9.14739 -9.02272 -8.48527 -6.16697 -0.54513 0.09709 0.25866 0.53030 0.59384 1.21295 1.30473 1.35797 1.43996 1.52730 2.06267 2.17020 2.26457 2.82924 2.91822 2.92565 3.17372 3.49454 3.53724 3.68298 3.78054 3.86661 4.04158 4.07384 4.18501 4.37612 4.44822 4.46594 4.57425 4.60887 4.67896 4.81236 5.04872 5.14568 5.21111 5.27600 5.53109 5.55500 5.65775 5.70359 5.74596 6.01615 6.15353 6.21795 6.53529 6.96358 7.01650 7.23630 7.75839 8.74261 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022495 B = 0.001808 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.419363 B =15480.270828 C =15900.994938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.230 6.230 10 C 0.123 3.877 11 C -0.208 4.208 12 C -0.041 4.041 13 C -0.183 4.183 14 C 0.183 3.817 15 N -0.694 5.694 16 C 0.440 3.560 17 C -0.247 4.247 18 C 0.266 3.734 19 C 0.202 3.798 20 N -0.271 5.271 21 N -0.050 5.050 22 N -0.197 5.197 23 H 0.497 0.503 24 N -0.260 5.260 25 N -0.557 5.557 26 C 0.346 3.654 27 N -0.589 5.589 28 C -0.043 4.043 29 C -0.247 4.247 30 H 0.273 0.727 31 H 0.113 0.887 32 H 0.150 0.850 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.411 0.589 36 H 0.164 0.836 37 H 0.232 0.768 38 H 0.141 0.859 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.297 -24.501 -1.954 30.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.072 3.928 11 C -0.227 4.227 12 C -0.059 4.059 13 C -0.185 4.185 14 C 0.061 3.939 15 N -0.325 5.325 16 C 0.194 3.806 17 C -0.278 4.278 18 C 0.122 3.878 19 C -0.079 4.079 20 N -0.145 5.145 21 N -0.045 5.045 22 N -0.048 5.048 23 H 0.357 0.643 24 N -0.114 5.114 25 N -0.278 5.278 26 C 0.056 3.944 27 N -0.315 5.315 28 C -0.062 4.062 29 C -0.266 4.266 30 H 0.082 0.918 31 H 0.131 0.869 32 H 0.167 0.833 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.248 0.752 36 H 0.182 0.818 37 H 0.248 0.752 38 H 0.159 0.841 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.126 -24.695 -1.913 30.114 hybrid contribution -0.209 1.205 -0.122 1.229 sum 16.917 -23.491 -2.035 29.020 Atomic orbital electron populations 1.70177 1.08016 1.28851 1.48591 1.26587 0.96837 1.02775 0.95829 0.84595 0.77847 0.74612 0.79241 1.18831 1.19718 1.17604 1.21827 0.92558 0.81333 1.53186 0.87901 1.83946 1.36136 1.12715 1.80809 1.20028 0.91698 0.87955 0.93165 1.20467 1.00087 0.90561 1.11630 1.20923 0.93218 0.96938 0.94866 1.19443 0.93356 0.94131 1.11521 1.20261 0.99332 0.91752 0.82558 1.44937 1.54485 1.22910 1.10154 1.18542 0.86754 0.86494 0.88816 1.22055 1.05948 0.98528 1.01270 1.17781 0.91868 0.89863 0.88311 1.23095 1.00024 0.92826 0.91949 1.76111 1.17303 1.19278 1.01783 1.78913 1.08225 0.97071 1.20287 1.47927 1.34709 1.21946 1.00245 0.64311 1.75101 1.16078 1.15064 1.05151 1.68279 1.26040 1.35058 0.98388 1.25260 0.85614 0.84751 0.98728 1.68028 1.21965 1.16875 1.24599 1.20981 0.99905 0.90799 0.94482 1.21258 0.92994 1.00222 1.12150 0.91813 0.86875 0.83265 0.89135 0.89387 0.75197 0.81800 0.75195 0.84082 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.49 13.67 21.62 0.30 -55.20 16 2 C -0.02 -1.25 5.49 84.84 0.47 -0.78 16 3 Si 1.02 41.98 29.55 68.60 2.03 44.01 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 7 C -0.41 -23.41 9.49 67.92 0.64 -22.76 16 8 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 9 O -0.23 -13.43 9.76 -22.72 -0.22 -13.65 16 10 C 0.12 5.77 6.65 22.58 0.15 5.92 16 11 C -0.21 -8.20 9.99 22.39 0.22 -7.98 16 12 C -0.04 -1.19 9.69 22.25 0.22 -0.98 16 13 C -0.18 -4.74 5.25 -19.84 -0.10 -4.85 16 14 C 0.18 3.36 5.05 85.63 0.43 3.80 16 15 N -0.69 -13.59 5.70 -348.38 -1.99 -15.58 16 16 C 0.44 9.18 7.71 133.10 1.03 10.20 16 17 C -0.25 -4.89 9.05 22.79 0.21 -4.68 16 18 C 0.27 5.71 6.79 41.86 0.28 5.99 16 19 C 0.20 4.16 8.06 137.36 1.11 5.27 16 20 N -0.27 -5.50 12.30 -52.19 -0.64 -6.14 16 21 N -0.05 -0.80 13.47 37.02 0.50 -0.30 16 22 N -0.20 -2.05 7.90 37.02 0.29 -1.75 16 23 H 0.50 -0.07 8.96 -347.55 -3.12 -3.18 16 24 N -0.26 -4.47 12.40 -52.14 -0.65 -5.12 16 25 N -0.56 -11.84 10.40 -189.28 -1.97 -13.81 16 26 C 0.35 6.35 12.28 180.93 2.22 8.58 16 27 N -0.59 -12.64 10.46 -197.77 -2.07 -14.71 16 28 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 29 C -0.25 -9.97 9.17 22.39 0.21 -9.76 16 30 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 32 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.09 1.41 7.91 -2.39 -0.02 1.39 16 34 H 0.09 1.40 7.92 -2.39 -0.02 1.39 16 35 H 0.41 8.59 8.59 -92.71 -0.80 7.79 16 36 H 0.16 2.83 6.76 -2.91 -0.02 2.81 16 37 H 0.23 2.44 8.06 -2.91 -0.02 2.41 16 38 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 39 H 0.12 4.94 5.64 -2.91 -0.02 4.92 16 Total: -1.00 -75.95 352.81 0.13 -75.82 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -2.74 Total: 19.54 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 7.29 Total: -13.12 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -6.23 Total: -112.60 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.22 Total: -13.65 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -75.95 0.13 -75.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.385 kcal (2) G-P(sol) polarization free energy of solvation -75.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds