Wall clock time and date at job start Tue Mar 31 2020 22:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86797 * 120.00189 * 2 1 4 4 H 1.48505 * 109.47157 * 269.99560 * 3 2 1 5 5 H 1.48503 * 109.47096 * 29.99555 * 3 2 1 6 6 H 1.48504 * 109.47308 * 149.99908 * 3 2 1 7 7 C 1.40033 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00779 * 170.20146 * 7 2 1 9 9 C 1.41550 * 119.99896 * 350.19639 * 7 2 1 10 10 C 1.41160 * 120.99962 * 151.72537 * 9 7 2 11 11 C 1.36586 * 119.12774 * 180.02562 * 10 9 7 12 12 N 1.32064 * 121.26311 * 359.74408 * 11 10 9 13 13 C 1.32496 * 122.22527 * 0.53355 * 12 11 10 14 14 N 1.39457 * 119.64682 * 179.74416 * 13 12 11 15 15 C 1.34777 * 120.00456 * 5.09552 * 14 13 12 16 16 O 1.21585 * 119.99387 * 354.94592 * 15 14 13 17 17 N 1.34776 * 120.00652 * 174.95094 * 15 14 13 18 18 N 1.40098 * 119.99557 * 359.97438 * 17 15 14 19 19 C 1.39314 * 119.99801 * 180.02562 * 18 17 15 20 20 N 1.32968 * 125.27436 * 359.97438 * 19 18 17 21 21 C 1.32953 * 109.62626 * 180.02562 * 20 19 18 22 22 C 1.40597 * 132.75287 * 180.02562 * 21 20 19 23 23 C 1.36256 * 119.27837 * 179.97438 * 22 21 20 24 24 C 1.40213 * 119.59552 * 359.97438 * 23 22 21 25 25 C 1.35256 * 120.19349 * 359.97438 * 24 23 22 26 26 N 1.35842 * 120.58992 * 0.02562 * 25 24 23 27 27 N 1.31804 * 125.27198 * 179.97438 * 19 18 17 28 28 C 1.38643 * 120.70200 * 359.46678 * 13 12 11 29 29 H 0.97002 * 120.00121 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.43484 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.36759 * 179.97438 * 11 10 9 32 32 H 0.97008 * 120.00171 * 185.08374 * 14 13 12 33 33 H 0.96992 * 120.00254 * 179.97438 * 17 15 14 34 34 H 0.97005 * 120.00310 * 359.97438 * 18 17 15 35 35 H 1.08004 * 120.36167 * 359.91768 * 22 21 20 36 36 H 1.08000 * 120.20564 * 179.97438 * 23 22 21 37 37 H 1.08001 * 119.90485 * 180.02562 * 24 23 22 38 38 H 1.08002 * 119.70247 * 180.02562 * 25 24 23 39 39 H 1.08006 * 120.66232 * 180.27547 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5390 1.4401 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0757 -1.2197 -0.1586 9 6 1.3154 -2.4295 0.2098 10 6 1.7914 -3.6403 -0.3379 11 6 1.0929 -4.7921 -0.1124 12 7 -0.0124 -4.7930 0.6103 13 6 -0.5084 -3.6864 1.1442 14 7 -1.6827 -3.7484 1.8938 15 6 -2.2510 -4.9415 2.1587 16 8 -1.7928 -5.9552 1.6682 17 7 -3.3272 -5.0108 2.9671 18 7 -3.8548 -3.8426 3.5325 19 6 -4.9669 -3.9143 4.3686 20 7 -5.6084 -5.0311 4.6992 21 6 -6.6213 -4.7410 5.5100 22 6 -7.5964 -5.5337 6.1405 23 6 -8.5293 -4.9368 6.9342 24 6 -8.5017 -3.5459 7.1094 25 6 -7.5544 -2.8015 6.4946 26 7 -6.6206 -3.3886 5.7017 27 7 -5.5463 -2.8855 4.9544 28 6 0.1308 -2.4684 0.9702 29 1 -0.4850 0.8400 -0.0004 30 1 2.6962 -3.6556 -0.9277 31 1 1.4534 -5.7206 -0.5300 32 1 -2.0905 -2.9328 2.2249 33 1 -3.7363 -5.8693 3.1574 34 1 -3.4454 -2.9840 3.3425 35 1 -7.6065 -6.6041 5.9965 36 1 -9.2854 -5.5313 7.4253 37 1 -9.2385 -3.0676 7.7377 38 1 -7.5403 -1.7308 6.6354 39 1 -0.2717 -1.5675 1.4094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626731699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:31 Heat of formation + Delta-G solvation = 194.683854 kcal Electronic energy + Delta-G solvation = -27042.349144 eV Core-core repulsion = 22989.942811 eV Total energy + Delta-G solvation = -4052.406333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.86398 -40.07334 -38.53105 -37.99478 -36.00972 -34.40202 -33.84576 -33.69164 -31.83419 -30.53788 -30.11246 -29.30122 -28.39333 -26.01777 -24.09225 -23.73167 -22.41603 -22.06479 -21.87099 -20.17753 -18.97302 -18.36236 -17.74952 -17.54478 -17.10081 -16.55263 -16.15390 -15.66820 -15.29786 -15.21297 -15.10447 -14.83191 -14.36893 -14.22328 -13.69322 -13.44220 -13.14147 -12.96980 -12.89559 -12.62617 -12.49714 -11.65036 -11.58573 -11.50309 -11.38675 -11.20299 -10.93216 -10.37879 -10.30148 -10.18862 -9.95148 -9.82122 -9.75670 -9.41876 -8.66245 -7.98591 -7.82838 -7.78710 -7.09038 -6.78465 -4.64445 0.32977 0.65070 1.33105 2.26401 2.51321 2.65128 2.78339 3.01049 3.05459 3.09211 3.09472 3.21155 3.66064 3.68564 3.84986 4.00640 4.31499 4.42047 4.66580 4.69520 4.90402 5.01548 5.38672 5.58692 5.64209 5.66017 5.79142 5.96391 6.01569 6.37470 6.43187 6.50078 6.52347 6.76148 6.90630 7.07915 7.14774 7.31397 7.38006 7.43140 7.73281 7.85896 8.09918 8.33208 8.41917 8.69010 8.73926 8.94572 9.64780 10.08971 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.002327 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.988986 B =12030.032484 C =13794.389077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.145 3.855 10 C -0.278 4.278 11 C 0.120 3.880 12 N -0.552 5.552 13 C 0.350 3.650 14 N -0.664 5.664 15 C 0.704 3.296 16 O -0.511 6.511 17 N -0.524 5.524 18 N -0.495 5.495 19 C 0.517 3.483 20 N -0.576 5.576 21 C 0.309 3.691 22 C -0.116 4.116 23 C -0.054 4.054 24 C -0.173 4.173 25 C 0.128 3.872 26 N -0.280 5.280 27 N -0.378 5.378 28 C -0.238 4.238 29 H 0.281 0.719 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.400 0.600 33 H 0.438 0.562 34 H 0.439 0.561 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.171 0.829 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.522 -1.955 15.056 23.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.136 3.864 10 C -0.302 4.302 11 C -0.034 4.034 12 N -0.271 5.271 13 C 0.125 3.875 14 N -0.314 5.314 15 C 0.403 3.597 16 O -0.377 6.377 17 N -0.284 5.284 18 N -0.237 5.237 19 C 0.149 3.851 20 N -0.313 5.313 21 C 0.055 3.945 22 C -0.139 4.139 23 C -0.080 4.080 24 C -0.197 4.197 25 C -0.002 4.002 26 N -0.054 5.054 27 N -0.222 5.222 28 C -0.264 4.264 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.235 0.765 33 H 0.283 0.717 34 H 0.284 0.716 35 H 0.174 0.826 36 H 0.167 0.833 37 H 0.177 0.823 38 H 0.188 0.812 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.127 -3.061 14.349 23.321 hybrid contribution 0.285 2.155 0.112 2.176 sum -17.842 -0.906 14.461 22.984 Atomic orbital electron populations 1.69740 1.07561 1.29261 1.35614 1.25942 0.94883 1.01427 0.92009 0.86213 0.80443 0.80194 0.79308 1.19392 1.20079 1.18430 1.19562 0.95846 0.89948 1.43299 0.89983 1.17578 0.90107 0.92334 0.86348 1.21718 1.04551 0.94652 1.09308 1.21489 0.90660 0.96655 0.94592 1.67165 1.15477 1.28164 1.16318 1.17928 0.85788 0.91111 0.92714 1.42553 1.26224 1.07089 1.55524 1.15883 0.79102 0.85241 0.79493 1.91131 1.60691 1.33496 1.52348 1.44801 1.31664 1.00975 1.50931 1.41740 1.28660 1.02821 1.50504 1.19923 0.88033 0.87466 0.89661 1.70550 1.11057 1.26656 1.22996 1.21540 0.94923 0.83338 0.94689 1.20301 0.93622 1.00838 0.99092 1.21240 0.97028 0.94649 0.95083 1.20908 1.00472 0.94302 1.03989 1.21569 0.87368 1.00551 0.90749 1.47383 1.20051 1.07360 1.30632 1.78854 1.05195 1.15814 1.22293 1.21549 1.01514 0.95191 1.08097 0.90787 0.87852 0.85812 0.76499 0.71652 0.71565 0.82606 0.83298 0.82305 0.81171 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.55 10.83 55.55 0.60 -18.94 16 2 C 0.08 1.82 5.30 -17.34 -0.09 1.72 16 3 Si 0.91 17.96 29.57 -169.99 -5.03 12.93 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.46 -11.63 9.13 -37.65 -0.34 -11.97 16 8 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 9 C 0.14 3.79 5.58 -106.55 -0.59 3.20 16 10 C -0.28 -6.81 9.85 -39.07 -0.38 -7.19 16 11 C 0.12 2.88 11.10 -18.05 -0.20 2.68 16 12 N -0.55 -14.22 7.86 -12.76 -0.10 -14.32 16 13 C 0.35 8.56 7.42 -154.68 -1.15 7.41 16 14 N -0.66 -13.35 5.35 -15.86 -0.08 -13.44 16 15 C 0.70 14.09 8.64 -86.92 -0.75 13.34 16 16 O -0.51 -12.24 15.44 5.29 0.08 -12.16 16 17 N -0.52 -8.42 6.32 27.63 0.17 -8.24 16 18 N -0.50 -7.09 6.45 29.92 0.19 -6.90 16 19 C 0.52 7.58 9.03 -321.74 -2.90 4.68 16 20 N -0.58 -8.21 10.75 -13.19 -0.14 -8.35 16 21 C 0.31 3.56 7.87 -156.29 -1.23 2.33 16 22 C -0.12 -0.84 10.11 -39.41 -0.40 -1.24 16 23 C -0.05 -0.22 10.07 -39.55 -0.40 -0.62 16 24 C -0.17 -0.66 9.99 -39.90 -0.40 -1.06 16 25 C 0.13 0.84 11.20 -16.84 -0.19 0.65 16 26 N -0.28 -3.13 3.89 -12.35 -0.05 -3.18 16 27 N -0.38 -5.25 12.81 29.91 0.38 -4.87 16 28 C -0.24 -6.01 8.60 -38.46 -0.33 -6.34 16 29 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 30 H 0.10 2.31 8.06 -52.48 -0.42 1.88 16 31 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 32 H 0.40 6.70 6.64 -40.82 -0.27 6.43 16 33 H 0.44 6.79 8.39 -182.61 -1.53 5.26 16 34 H 0.44 5.68 6.84 -182.59 -1.25 4.43 16 35 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.15 0.11 8.06 -52.49 -0.42 -0.31 16 37 H 0.16 0.06 8.06 -52.49 -0.42 -0.36 16 38 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.13 3.23 6.27 -52.48 -0.33 2.90 16 LS Contribution 347.10 15.07 5.23 5.23 Total: -1.00 -34.85 347.10 -13.56 -48.41 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -5.46 Total: 16.22 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: -9.36 Total: 7.60 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: 0.98 Total: -78.23 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.85 -13.56 -48.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626731699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.093 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 194.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds