Wall clock time and date at job start Tue Mar 31 2020 22:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86797 * 120.00189 * 2 1 4 4 H 1.48505 * 109.47157 * 269.99560 * 3 2 1 5 5 H 1.48503 * 109.47096 * 29.99555 * 3 2 1 6 6 H 1.48504 * 109.47308 * 149.99908 * 3 2 1 7 7 C 1.40033 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00779 * 170.20146 * 7 2 1 9 9 C 1.41550 * 119.99896 * 350.19639 * 7 2 1 10 10 C 1.41160 * 120.99962 * 151.72537 * 9 7 2 11 11 C 1.36586 * 119.12774 * 180.02562 * 10 9 7 12 12 N 1.32064 * 121.26311 * 359.74408 * 11 10 9 13 13 C 1.32496 * 122.22527 * 0.53355 * 12 11 10 14 14 N 1.39457 * 119.64682 * 179.74416 * 13 12 11 15 15 C 1.34777 * 120.00456 * 5.09552 * 14 13 12 16 16 O 1.21585 * 119.99387 * 354.94592 * 15 14 13 17 17 N 1.34776 * 120.00652 * 174.95094 * 15 14 13 18 18 N 1.40098 * 119.99557 * 359.97438 * 17 15 14 19 19 C 1.39314 * 119.99801 * 180.02562 * 18 17 15 20 20 N 1.32968 * 125.27436 * 359.97438 * 19 18 17 21 21 C 1.32953 * 109.62626 * 180.02562 * 20 19 18 22 22 C 1.40597 * 132.75287 * 180.02562 * 21 20 19 23 23 C 1.36256 * 119.27837 * 179.97438 * 22 21 20 24 24 C 1.40213 * 119.59552 * 359.97438 * 23 22 21 25 25 C 1.35256 * 120.19349 * 359.97438 * 24 23 22 26 26 N 1.35842 * 120.58992 * 0.02562 * 25 24 23 27 27 N 1.31804 * 125.27198 * 179.97438 * 19 18 17 28 28 C 1.38643 * 120.70200 * 359.46678 * 13 12 11 29 29 H 0.97002 * 120.00121 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.43484 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.36759 * 179.97438 * 11 10 9 32 32 H 0.97008 * 120.00171 * 185.08374 * 14 13 12 33 33 H 0.96992 * 120.00254 * 179.97438 * 17 15 14 34 34 H 0.97005 * 120.00310 * 359.97438 * 18 17 15 35 35 H 1.08004 * 120.36167 * 359.91768 * 22 21 20 36 36 H 1.08000 * 120.20564 * 179.97438 * 23 22 21 37 37 H 1.08001 * 119.90485 * 180.02562 * 24 23 22 38 38 H 1.08002 * 119.70247 * 180.02562 * 25 24 23 39 39 H 1.08006 * 120.66232 * 180.27547 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5390 1.4401 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0757 -1.2197 -0.1586 9 6 1.3154 -2.4295 0.2098 10 6 1.7914 -3.6403 -0.3379 11 6 1.0929 -4.7921 -0.1124 12 7 -0.0124 -4.7930 0.6103 13 6 -0.5084 -3.6864 1.1442 14 7 -1.6827 -3.7484 1.8938 15 6 -2.2510 -4.9415 2.1587 16 8 -1.7928 -5.9552 1.6682 17 7 -3.3272 -5.0108 2.9671 18 7 -3.8548 -3.8426 3.5325 19 6 -4.9669 -3.9143 4.3686 20 7 -5.6084 -5.0311 4.6992 21 6 -6.6213 -4.7410 5.5100 22 6 -7.5964 -5.5337 6.1405 23 6 -8.5293 -4.9368 6.9342 24 6 -8.5017 -3.5459 7.1094 25 6 -7.5544 -2.8015 6.4946 26 7 -6.6206 -3.3886 5.7017 27 7 -5.5463 -2.8855 4.9544 28 6 0.1308 -2.4684 0.9702 29 1 -0.4850 0.8400 -0.0004 30 1 2.6962 -3.6556 -0.9277 31 1 1.4534 -5.7206 -0.5300 32 1 -2.0905 -2.9328 2.2249 33 1 -3.7363 -5.8693 3.1574 34 1 -3.4454 -2.9840 3.3425 35 1 -7.6065 -6.6041 5.9965 36 1 -9.2854 -5.5313 7.4253 37 1 -9.2385 -3.0676 7.7377 38 1 -7.5403 -1.7308 6.6354 39 1 -0.2717 -1.5675 1.4094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626731699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:30 Heat of formation + Delta-G solvation = 173.986675 kcal Electronic energy + Delta-G solvation = -27043.246641 eV Core-core repulsion = 22989.942811 eV Total energy + Delta-G solvation = -4053.303830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.65190 -41.69673 -39.99522 -39.08148 -37.24772 -36.20382 -35.53031 -34.49341 -32.88749 -32.42216 -30.84665 -30.51158 -29.94433 -27.92824 -24.75610 -24.51210 -24.03140 -23.78768 -22.90624 -21.84709 -20.37058 -19.67791 -19.06763 -18.59679 -17.96200 -17.43428 -17.42468 -16.99796 -16.75317 -16.67458 -16.25038 -16.07668 -15.92902 -15.52213 -15.37506 -14.72840 -14.66480 -14.33623 -14.11770 -13.79596 -13.35193 -13.21919 -12.87489 -12.69787 -12.46197 -12.25297 -12.21838 -12.16383 -11.91812 -11.69938 -11.59124 -11.22001 -11.21085 -10.72666 -9.92386 -9.70019 -9.41482 -9.06390 -8.80802 -8.60365 -6.58372 -0.17391 -0.01202 0.28026 0.76513 0.98839 1.36214 1.41438 1.52634 1.56483 1.66221 1.72164 2.04500 2.20587 2.48365 2.77326 2.83119 3.22005 3.69054 3.72976 3.90995 4.04799 4.18269 4.41561 4.44379 4.61122 4.72176 4.74349 4.90317 4.99422 5.04342 5.15272 5.21991 5.25077 5.30840 5.44483 5.48720 5.56594 5.63128 5.84217 5.94760 6.12814 6.21952 6.52252 6.61716 6.78094 6.83013 7.06404 7.35734 7.78130 8.29199 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.002327 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.988986 B =12030.032484 C =13794.389077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.482 4.482 8 H 0.086 0.914 9 C 0.116 3.884 10 C -0.289 4.289 11 C 0.114 3.886 12 N -0.577 5.577 13 C 0.348 3.652 14 N -0.656 5.656 15 C 0.707 3.293 16 O -0.554 6.554 17 N -0.505 5.505 18 N -0.496 5.496 19 C 0.501 3.499 20 N -0.614 5.614 21 C 0.284 3.716 22 C -0.136 4.136 23 C -0.027 4.027 24 C -0.142 4.142 25 C 0.096 3.904 26 N -0.286 5.286 27 N -0.403 5.403 28 C -0.252 4.252 29 H 0.291 0.709 30 H 0.119 0.881 31 H 0.152 0.848 32 H 0.414 0.586 33 H 0.443 0.557 34 H 0.443 0.557 35 H 0.168 0.832 36 H 0.196 0.804 37 H 0.207 0.793 38 H 0.191 0.809 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.022 -0.827 17.213 27.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.180 4.180 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.513 4.513 8 H 0.104 0.896 9 C 0.107 3.893 10 C -0.313 4.313 11 C -0.039 4.039 12 N -0.297 5.297 13 C 0.121 3.879 14 N -0.306 5.306 15 C 0.406 3.594 16 O -0.423 6.423 17 N -0.263 5.263 18 N -0.240 5.240 19 C 0.133 3.867 20 N -0.352 5.352 21 C 0.033 3.967 22 C -0.158 4.158 23 C -0.053 4.053 24 C -0.164 4.164 25 C -0.033 4.033 26 N -0.060 5.060 27 N -0.247 5.247 28 C -0.278 4.278 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.169 0.831 32 H 0.251 0.749 33 H 0.289 0.711 34 H 0.288 0.712 35 H 0.186 0.814 36 H 0.213 0.787 37 H 0.224 0.776 38 H 0.208 0.792 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.727 -1.919 16.576 26.609 hybrid contribution 0.728 1.805 -0.339 1.976 sum -19.999 -0.114 16.237 25.761 Atomic orbital electron populations 1.69784 1.08921 1.30815 1.34959 1.26819 0.95690 1.04557 0.90933 0.85089 0.78992 0.75483 0.79469 1.18821 1.18986 1.18175 1.19856 0.96241 0.90773 1.44457 0.89633 1.18017 0.90870 0.93450 0.86950 1.21909 1.05304 0.94385 1.09708 1.21959 0.90186 0.97746 0.94014 1.67285 1.16363 1.28735 1.17288 1.18107 0.86597 0.90708 0.92509 1.42370 1.25273 1.08016 1.54979 1.15804 0.79522 0.84471 0.79597 1.91091 1.62387 1.34637 1.54195 1.44307 1.30339 1.02036 1.49601 1.41600 1.29303 1.01885 1.51219 1.19993 0.88266 0.88189 0.90254 1.70458 1.12704 1.27096 1.24986 1.22114 0.95403 0.84099 0.95075 1.20703 0.93696 1.01443 0.99980 1.21874 0.95877 0.95178 0.92374 1.21613 0.99075 0.94148 1.01604 1.22378 0.87476 1.02321 0.91084 1.47476 1.20069 1.07498 1.30932 1.78664 1.06518 1.16429 1.23125 1.21521 1.02034 0.95340 1.08943 0.89822 0.86254 0.83092 0.74854 0.71126 0.71156 0.81420 0.78712 0.77580 0.79173 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.50 10.83 21.84 0.24 -40.27 16 2 C 0.04 1.74 5.30 85.29 0.45 2.19 16 3 Si 0.99 36.30 29.57 68.60 2.03 38.33 16 4 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 6 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 7 C -0.48 -25.01 9.13 23.52 0.21 -24.79 16 8 H 0.09 4.22 7.87 -2.91 -0.02 4.20 16 9 C 0.12 6.21 5.58 -21.11 -0.12 6.09 16 10 C -0.29 -14.42 9.85 22.60 0.22 -14.20 16 11 C 0.11 5.58 11.10 84.27 0.94 6.52 16 12 N -0.58 -30.50 7.86 -194.27 -1.53 -32.03 16 13 C 0.35 17.56 7.42 132.76 0.99 18.55 16 14 N -0.66 -27.40 5.35 -322.36 -1.72 -29.13 16 15 C 0.71 29.46 8.64 179.05 1.55 31.00 16 16 O -0.55 -27.54 15.44 -3.98 -0.06 -27.60 16 17 N -0.51 -17.03 6.32 -184.75 -1.17 -18.20 16 18 N -0.50 -14.98 6.45 -59.26 -0.38 -15.36 16 19 C 0.50 15.41 9.03 261.11 2.36 17.77 16 20 N -0.61 -18.22 10.75 -195.65 -2.10 -20.33 16 21 C 0.28 6.50 7.87 134.06 1.06 7.55 16 22 C -0.14 -1.67 10.11 22.38 0.23 -1.44 16 23 C -0.03 -0.09 10.07 22.29 0.22 0.13 16 24 C -0.14 -0.38 9.99 22.06 0.22 -0.16 16 25 C 0.10 1.03 11.20 83.38 0.93 1.96 16 26 N -0.29 -6.25 3.89 -192.98 -0.75 -7.01 16 27 N -0.40 -11.57 12.81 -59.29 -0.76 -12.33 16 28 C -0.25 -13.19 8.60 23.00 0.20 -12.99 16 29 H 0.29 12.92 8.29 -92.71 -0.77 12.15 16 30 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 31 H 0.15 6.34 8.06 -2.91 -0.02 6.32 16 32 H 0.41 14.50 6.64 -92.70 -0.62 13.89 16 33 H 0.44 14.45 8.39 -213.33 -1.79 12.66 16 34 H 0.44 12.17 6.84 -213.32 -1.46 10.71 16 35 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.20 -1.04 8.06 -2.91 -0.02 -1.06 16 37 H 0.21 -1.31 8.06 -2.91 -0.02 -1.34 16 38 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.13 6.51 6.27 -2.91 -0.02 6.49 16 Total: -1.00 -80.15 347.10 0.55 -79.60 By element: Atomic # 1 Polarization: 48.84 SS G_CDS: -2.69 Total: 46.15 kcal Atomic # 6 Polarization: 28.72 SS G_CDS: 9.45 Total: 38.17 kcal Atomic # 7 Polarization: -166.47 SS G_CDS: -8.18 Total: -174.65 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.06 Total: -27.60 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -80.15 0.55 -79.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626731699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.585 kcal (2) G-P(sol) polarization free energy of solvation -80.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds