Wall clock time and date at job start Tue Mar 31 2020 22:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47336 * 270.00028 * 3 2 1 5 5 H 1.48503 * 109.47046 * 30.00150 * 3 2 1 6 6 H 1.48502 * 109.46925 * 149.99615 * 3 2 1 7 7 C 1.38945 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99820 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00328 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99667 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.47105 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00385 * 180.02562 * 13 12 10 15 15 O 1.21593 * 119.99674 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00297 * 180.02562 * 14 13 12 17 17 C 1.46502 * 119.99921 * 180.02562 * 16 14 13 18 18 H 1.08996 * 109.46973 * 324.99242 * 17 16 14 19 19 C 1.53002 * 109.46673 * 204.99447 * 17 16 14 20 20 H 1.08991 * 110.46178 * 292.54366 * 19 17 16 21 21 C 1.54512 * 110.50902 * 55.15149 * 19 17 16 22 22 C 1.54478 * 104.06558 * 118.78116 * 21 19 17 23 23 O 1.44424 * 104.80114 * 23.97265 * 22 21 19 24 24 C 1.44420 * 105.27849 * 319.49138 * 23 22 21 25 25 C 1.52997 * 109.47302 * 84.99820 * 17 16 14 26 26 F 1.39905 * 109.47100 * 185.24229 * 25 17 16 27 27 F 1.39901 * 109.47166 * 305.24438 * 25 17 16 28 28 F 1.39900 * 109.47403 * 65.24563 * 25 17 16 29 29 H 0.97004 * 120.00453 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00062 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47187 * 60.00526 * 12 10 9 32 32 H 1.08999 * 109.47390 * 300.00435 * 12 10 9 33 33 H 0.97002 * 119.99614 * 0.02562 * 13 12 10 34 34 H 0.96999 * 119.99869 * 359.97438 * 16 14 13 35 35 H 1.09001 * 110.50906 * 237.42340 * 21 19 17 36 36 H 1.08994 * 110.51219 * 359.97438 * 21 19 17 37 37 H 1.08992 * 110.37480 * 142.80835 * 22 21 19 38 38 H 1.09005 * 110.37140 * 265.03533 * 22 21 19 39 39 H 1.08998 * 110.37370 * 281.67919 * 24 23 22 40 40 H 1.09000 * 110.37391 * 159.34436 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1958 -5.9765 0.0016 14 6 1.7466 -7.2471 0.0017 15 8 0.5511 -7.4693 0.0008 16 7 2.6224 -8.2715 0.0026 17 6 2.1340 -9.6527 0.0021 18 1 1.2187 -9.7146 0.5907 19 6 3.1961 -10.5693 0.6128 20 1 4.0717 -10.6218 -0.0341 21 6 3.5928 -10.0745 2.0218 22 6 3.2093 -11.2460 2.9529 23 8 3.2180 -12.4123 2.1012 24 6 2.6197 -11.9812 0.8594 25 6 1.8470 -10.0917 -1.4351 26 9 1.2690 -11.3657 -1.4270 27 9 0.9663 -9.1838 -2.0330 28 9 3.0432 -10.1270 -2.1597 29 1 -0.4851 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6168 -4.9209 -0.8887 32 1 0.6174 -4.9204 0.8913 33 1 3.1495 -5.7992 0.0019 34 1 3.5761 -8.0942 0.0029 35 1 4.6646 -9.8824 2.0713 36 1 3.0327 -9.1767 2.2831 37 1 3.9444 -11.3530 3.7505 38 1 2.2157 -11.0877 3.3723 39 1 1.5350 -11.9367 0.9562 40 1 2.9019 -12.6531 0.0488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627956412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:04 Heat of formation + Delta-G solvation = -264.164146 kcal Electronic energy + Delta-G solvation = -30241.349288 eV Core-core repulsion = 25255.294650 eV Total energy + Delta-G solvation = -4986.054637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.27360 -47.82083 -47.66483 -40.54211 -39.60901 -38.29443 -35.99840 -34.51963 -33.78104 -32.40063 -31.41716 -30.41079 -28.31911 -27.16100 -24.66576 -23.86014 -23.02118 -21.15802 -21.01477 -19.70263 -18.88061 -18.64767 -18.41888 -18.21742 -18.00897 -16.89451 -16.47252 -15.93238 -15.65465 -15.50454 -15.40809 -14.79209 -14.65736 -14.54220 -14.43289 -14.18154 -14.12437 -14.08416 -13.82735 -13.81605 -13.63943 -13.54780 -12.97159 -12.85856 -12.26419 -12.21348 -11.93774 -11.92935 -11.66932 -11.59079 -11.18330 -11.15858 -10.49265 -10.38918 -10.31183 -10.22527 -9.67847 -9.66089 -8.86551 -8.68964 -8.14584 -6.55375 -3.97646 2.20327 2.45954 3.08445 3.13623 3.19712 3.24633 3.31883 3.53731 3.69384 3.71840 3.88518 3.98653 4.08773 4.22390 4.33175 4.40428 4.59055 4.67437 4.78384 4.81981 4.94015 5.13208 5.24597 5.31791 5.33404 5.48178 5.52015 5.80293 5.90651 5.91596 6.01788 6.29144 6.56421 6.72874 7.42191 7.87591 7.94528 8.39852 8.51204 9.00385 9.34571 9.82027 10.61394 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021362 B = 0.002328 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.449497 B =12026.321906 C =12673.839105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.128 3.872 13 N -0.716 5.716 14 C 0.705 3.295 15 O -0.581 6.581 16 N -0.739 5.739 17 C 0.139 3.861 18 H 0.134 0.866 19 C -0.138 4.138 20 H 0.105 0.895 21 C -0.147 4.147 22 C 0.043 3.957 23 O -0.370 6.370 24 C 0.052 3.948 25 C 0.433 3.567 26 F -0.182 7.182 27 F -0.166 7.166 28 F -0.183 7.183 29 H 0.275 0.725 30 H 0.396 0.604 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.409 0.591 34 H 0.407 0.593 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.490 -22.298 2.348 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.213 3.787 11 O -0.485 6.485 12 C -0.001 4.001 13 N -0.373 5.373 14 C 0.405 3.595 15 O -0.458 6.458 16 N -0.396 5.396 17 C 0.030 3.970 18 H 0.152 0.848 19 C -0.157 4.157 20 H 0.124 0.876 21 C -0.185 4.185 22 C -0.034 4.034 23 O -0.288 6.288 24 C -0.025 4.025 25 C 0.376 3.624 26 F -0.164 7.164 27 F -0.147 7.147 28 F -0.165 7.165 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.246 0.754 34 H 0.243 0.757 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.101 -22.454 2.382 22.949 hybrid contribution 0.489 1.263 -0.485 1.439 sum 4.589 -21.190 1.897 21.764 Atomic orbital electron populations 1.69611 1.06025 1.28603 1.49130 1.25332 0.95668 0.99966 0.96712 0.85810 0.79222 0.80459 0.78524 1.20238 1.20770 1.19306 1.19723 0.93456 0.81961 1.48372 0.87662 1.41785 1.09517 1.04449 1.62453 1.19709 0.88281 0.84958 0.85766 1.90493 1.13710 1.86813 1.57502 1.20847 0.91102 0.84711 1.03392 1.44722 1.11542 1.03017 1.78050 1.15817 0.85072 0.80663 0.77958 1.90961 1.13556 1.83943 1.57318 1.44885 1.10069 1.03108 1.81491 1.21871 1.01865 0.82890 0.90406 0.84838 1.22921 0.98432 0.95287 0.99050 0.87629 1.23003 1.03397 0.99823 0.92276 1.23470 1.01817 0.84185 0.93907 1.89166 1.82079 1.32707 1.24877 1.23544 0.97989 0.93047 0.87951 1.21300 0.74631 0.75197 0.91253 1.93169 1.85040 1.41209 1.96939 1.93283 1.69175 1.66653 1.85561 1.93168 1.46449 1.96224 1.80634 0.91529 0.76988 0.89760 0.89778 0.75365 0.75690 0.89556 0.89219 0.88626 0.91774 0.91113 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.51 13.05 55.50 0.72 -22.79 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.21 29.55 -169.99 -5.02 15.18 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.31 -8.14 9.68 -14.94 -0.14 -8.29 16 8 H 0.11 2.92 7.16 -52.48 -0.38 2.54 16 9 N -0.55 -13.23 5.29 -10.96 -0.06 -13.28 16 10 C 0.43 9.44 7.85 -10.98 -0.09 9.35 16 11 O -0.60 -14.74 15.24 5.55 0.08 -14.66 16 12 C 0.13 2.24 6.15 -5.19 -0.03 2.21 16 13 N -0.72 -11.01 5.53 -66.41 -0.37 -11.38 16 14 C 0.71 10.17 7.98 -86.92 -0.69 9.48 16 15 O -0.58 -10.19 14.96 5.28 0.08 -10.11 16 16 N -0.74 -7.48 4.20 -58.68 -0.25 -7.72 16 17 C 0.14 1.26 1.55 -67.93 -0.11 1.16 16 18 H 0.13 1.29 7.41 -51.93 -0.38 0.90 16 19 C -0.14 -0.93 2.63 -89.05 -0.23 -1.16 16 20 H 0.11 0.64 7.51 -51.93 -0.39 0.25 16 21 C -0.15 -0.90 6.39 -25.16 -0.16 -1.06 16 22 C 0.04 0.28 7.63 37.93 0.29 0.57 16 23 O -0.37 -3.25 11.65 -35.23 -0.41 -3.66 16 24 C 0.05 0.38 5.71 37.93 0.22 0.59 16 25 C 0.43 4.67 2.83 37.16 0.11 4.77 16 26 F -0.18 -1.81 15.32 2.25 0.03 -1.78 16 27 F -0.17 -2.37 15.54 2.25 0.04 -2.33 16 28 F -0.18 -1.94 16.48 2.25 0.04 -1.90 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.40 9.22 7.90 -40.82 -0.32 8.90 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.41 6.06 7.45 -40.82 -0.30 5.76 16 34 H 0.41 3.18 8.56 -40.82 -0.35 2.83 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.60 7.30 -51.93 -0.38 0.22 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.49 7.42 -51.93 -0.39 0.10 16 40 H 0.10 0.66 8.03 -51.93 -0.42 0.24 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -31.80 349.80 -5.34 -37.14 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -4.56 Total: 13.81 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: -0.94 Total: 18.21 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.05 Total: -55.18 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.25 Total: -28.43 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.11 Total: -6.01 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.80 -5.34 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627956412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.028 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds