Wall clock time and date at job start Tue Mar 31 2020 22:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47336 * 270.00028 * 3 2 1 5 5 H 1.48503 * 109.47046 * 30.00150 * 3 2 1 6 6 H 1.48502 * 109.46925 * 149.99615 * 3 2 1 7 7 C 1.38945 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99820 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00328 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99667 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.47105 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00385 * 180.02562 * 13 12 10 15 15 O 1.21593 * 119.99674 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00297 * 180.02562 * 14 13 12 17 17 C 1.46502 * 119.99921 * 180.02562 * 16 14 13 18 18 H 1.08996 * 109.46973 * 324.99242 * 17 16 14 19 19 C 1.53002 * 109.46673 * 204.99447 * 17 16 14 20 20 H 1.08991 * 110.46178 * 292.54366 * 19 17 16 21 21 C 1.54512 * 110.50902 * 55.15149 * 19 17 16 22 22 C 1.54478 * 104.06558 * 118.78116 * 21 19 17 23 23 O 1.44424 * 104.80114 * 23.97265 * 22 21 19 24 24 C 1.44420 * 105.27849 * 319.49138 * 23 22 21 25 25 C 1.52997 * 109.47302 * 84.99820 * 17 16 14 26 26 F 1.39905 * 109.47100 * 185.24229 * 25 17 16 27 27 F 1.39901 * 109.47166 * 305.24438 * 25 17 16 28 28 F 1.39900 * 109.47403 * 65.24563 * 25 17 16 29 29 H 0.97004 * 120.00453 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00062 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47187 * 60.00526 * 12 10 9 32 32 H 1.08999 * 109.47390 * 300.00435 * 12 10 9 33 33 H 0.97002 * 119.99614 * 0.02562 * 13 12 10 34 34 H 0.96999 * 119.99869 * 359.97438 * 16 14 13 35 35 H 1.09001 * 110.50906 * 237.42340 * 21 19 17 36 36 H 1.08994 * 110.51219 * 359.97438 * 21 19 17 37 37 H 1.08992 * 110.37480 * 142.80835 * 22 21 19 38 38 H 1.09005 * 110.37140 * 265.03533 * 22 21 19 39 39 H 1.08998 * 110.37370 * 281.67919 * 24 23 22 40 40 H 1.09000 * 110.37391 * 159.34436 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1958 -5.9765 0.0016 14 6 1.7466 -7.2471 0.0017 15 8 0.5511 -7.4693 0.0008 16 7 2.6224 -8.2715 0.0026 17 6 2.1340 -9.6527 0.0021 18 1 1.2187 -9.7146 0.5907 19 6 3.1961 -10.5693 0.6128 20 1 4.0717 -10.6218 -0.0341 21 6 3.5928 -10.0745 2.0218 22 6 3.2093 -11.2460 2.9529 23 8 3.2180 -12.4123 2.1012 24 6 2.6197 -11.9812 0.8594 25 6 1.8470 -10.0917 -1.4351 26 9 1.2690 -11.3657 -1.4270 27 9 0.9663 -9.1838 -2.0330 28 9 3.0432 -10.1270 -2.1597 29 1 -0.4851 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6168 -4.9209 -0.8887 32 1 0.6174 -4.9204 0.8913 33 1 3.1495 -5.7992 0.0019 34 1 3.5761 -8.0942 0.0029 35 1 4.6646 -9.8824 2.0713 36 1 3.0327 -9.1767 2.2831 37 1 3.9444 -11.3530 3.7505 38 1 2.2157 -11.0877 3.3723 39 1 1.5350 -11.9367 0.9562 40 1 2.9019 -12.6531 0.0488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627956412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:04 Heat of formation + Delta-G solvation = -288.792382 kcal Electronic energy + Delta-G solvation = -30242.417248 eV Core-core repulsion = 25255.294650 eV Total energy + Delta-G solvation = -4987.122598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.16175 -48.66667 -48.62920 -41.53115 -40.51639 -39.93462 -36.92319 -36.20966 -35.33066 -33.41838 -33.13446 -31.05230 -29.39839 -28.33321 -26.39041 -24.71031 -23.65750 -22.13558 -21.81369 -21.36736 -20.16965 -19.79550 -19.55722 -19.32611 -19.04858 -17.77905 -17.44428 -17.15170 -16.78694 -16.58012 -16.43282 -16.31176 -15.88005 -15.64449 -15.48264 -15.42042 -15.25545 -15.14383 -15.05085 -14.76712 -14.72788 -14.25370 -13.96395 -13.83474 -13.55017 -13.53564 -13.47607 -12.91110 -12.75561 -12.48422 -12.44750 -12.15699 -12.12390 -11.71625 -11.56153 -11.54802 -10.81200 -10.69129 -10.54991 -10.13652 -10.04765 -8.50393 -6.00411 1.19497 1.37057 1.43978 1.54566 1.56942 1.90919 2.06087 2.27885 2.61910 2.73191 2.84130 3.06776 3.14955 3.17220 3.24203 3.50495 3.65060 3.75366 3.99376 4.10038 4.21020 4.29006 4.32244 4.44751 4.46511 4.72561 4.78505 4.86315 4.97097 4.99630 5.07597 5.24103 5.39271 5.72152 5.76797 5.92919 6.48612 6.84583 7.04439 7.34074 7.46263 7.95239 8.66483 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021362 B = 0.002328 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.449497 B =12026.321906 C =12673.839105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.141 3.859 13 N -0.717 5.717 14 C 0.708 3.292 15 O -0.611 6.611 16 N -0.721 5.721 17 C 0.145 3.855 18 H 0.130 0.870 19 C -0.128 4.128 20 H 0.118 0.882 21 C -0.142 4.142 22 C 0.038 3.962 23 O -0.389 6.389 24 C 0.049 3.951 25 C 0.430 3.570 26 F -0.177 7.177 27 F -0.188 7.188 28 F -0.181 7.181 29 H 0.279 0.721 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.412 0.588 34 H 0.421 0.579 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.312 -22.813 2.680 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.511 6.511 12 C 0.013 3.987 13 N -0.374 5.374 14 C 0.408 3.592 15 O -0.490 6.490 16 N -0.379 5.379 17 C 0.035 3.965 18 H 0.148 0.852 19 C -0.147 4.147 20 H 0.136 0.864 21 C -0.180 4.180 22 C -0.038 4.038 23 O -0.308 6.308 24 C -0.028 4.028 25 C 0.374 3.626 26 F -0.158 7.158 27 F -0.170 7.170 28 F -0.162 7.162 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.251 0.749 34 H 0.260 0.740 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.948 -23.008 2.713 23.690 hybrid contribution 0.246 1.296 -0.596 1.447 sum 5.194 -21.712 2.117 22.425 Atomic orbital electron populations 1.69677 1.07006 1.29611 1.49369 1.26111 0.96507 1.02663 0.95851 0.84885 0.77972 0.76591 0.78660 1.19681 1.19746 1.19345 1.19726 0.92962 0.83518 1.50288 0.89507 1.41838 1.09618 1.04610 1.63460 1.20403 0.88119 0.85877 0.83491 1.90471 1.15117 1.87535 1.57988 1.20623 0.90891 0.82877 1.04318 1.44616 1.11281 1.02987 1.78553 1.15847 0.85022 0.80800 0.77512 1.90947 1.15085 1.84351 1.58648 1.44689 1.10294 1.02712 1.80164 1.21971 1.02679 0.82413 0.89388 0.85195 1.22895 0.97868 0.94416 0.99544 0.86391 1.22992 1.04230 0.99334 0.91453 1.23611 1.02416 0.83721 0.94090 1.89151 1.82257 1.33836 1.25544 1.23611 0.98076 0.93284 0.87831 1.21534 0.74295 0.75074 0.91733 1.93179 1.84985 1.40716 1.96929 1.93239 1.70069 1.67588 1.86084 1.93172 1.46136 1.96204 1.80732 0.91099 0.76694 0.89085 0.88504 0.74942 0.74042 0.88096 0.89658 0.87415 0.91650 0.91066 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.04 13.05 21.66 0.28 -47.76 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 1.00 41.05 29.55 68.60 2.03 43.08 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.34 -18.07 9.68 84.04 0.81 -17.25 16 8 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.56 -27.28 5.29 -306.98 -1.62 -28.90 16 10 C 0.43 19.13 7.85 87.66 0.69 19.82 16 11 O -0.62 -30.70 15.24 -3.05 -0.05 -30.74 16 12 C 0.14 4.84 6.15 85.63 0.53 5.37 16 13 N -0.72 -21.20 5.53 -482.29 -2.67 -23.87 16 14 C 0.71 19.53 7.98 179.06 1.43 20.96 16 15 O -0.61 -20.87 14.96 -4.01 -0.06 -20.93 16 16 N -0.72 -13.39 4.20 -457.82 -1.92 -15.31 16 17 C 0.14 2.40 1.55 44.99 0.07 2.47 16 18 H 0.13 2.35 7.41 -2.39 -0.02 2.33 16 19 C -0.13 -1.46 2.63 -9.78 -0.03 -1.48 16 20 H 0.12 1.11 7.51 -2.39 -0.02 1.09 16 21 C -0.14 -1.41 6.39 31.61 0.20 -1.21 16 22 C 0.04 0.43 7.63 72.48 0.55 0.98 16 23 O -0.39 -6.22 11.65 -148.98 -1.74 -7.95 16 24 C 0.05 0.63 5.71 72.48 0.41 1.05 16 25 C 0.43 8.75 2.83 71.98 0.20 8.96 16 26 F -0.18 -3.30 15.32 44.97 0.69 -2.61 16 27 F -0.19 -5.28 15.54 44.97 0.70 -4.58 16 28 F -0.18 -3.53 16.48 44.97 0.74 -2.79 16 29 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 30 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 31 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.41 11.73 7.45 -92.71 -0.69 11.04 16 34 H 0.42 5.63 8.56 -92.71 -0.79 4.83 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.96 7.30 -2.39 -0.02 0.94 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.07 0.90 7.42 -2.39 -0.02 0.88 16 40 H 0.11 1.22 8.03 -2.39 -0.02 1.20 16 Total: -1.00 -67.36 349.80 0.65 -66.71 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -1.07 Total: 36.10 kcal Atomic # 6 Polarization: 34.23 SS G_CDS: 5.34 Total: 39.57 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -5.93 Total: -115.84 kcal Atomic # 8 Polarization: -57.79 SS G_CDS: -1.84 Total: -59.63 kcal Atomic # 9 Polarization: -12.11 SS G_CDS: 2.13 Total: -9.98 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -67.36 0.65 -66.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627956412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.084 kcal (2) G-P(sol) polarization free energy of solvation -67.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -289.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds