Wall clock time and date at job start Tue Mar 31 2020 22:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99872 * 179.97438 * 13 12 10 15 15 O 1.21590 * 120.00297 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99768 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99449 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47303 * 325.00044 * 17 16 14 19 19 C 1.52999 * 109.46802 * 204.99768 * 17 16 14 20 20 H 1.08999 * 110.80666 * 300.70878 * 19 17 16 21 21 C 1.54812 * 110.90745 * 177.07384 * 19 17 16 22 22 C 1.54099 * 104.18868 * 220.92316 * 21 19 17 23 23 O 1.43739 * 107.29380 * 357.97455 * 22 21 19 24 24 C 1.44415 * 107.00219 * 26.48509 * 23 22 21 25 25 C 1.52996 * 109.46983 * 85.00419 * 17 16 14 26 26 F 1.39907 * 109.47394 * 59.99292 * 25 17 16 27 27 F 1.39904 * 109.47511 * 179.97438 * 25 17 16 28 28 F 1.39908 * 109.47025 * 299.99546 * 25 17 16 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 34 34 H 0.96992 * 119.99896 * 0.02562 * 16 14 13 35 35 H 1.09000 * 110.48725 * 339.60089 * 21 19 17 36 36 H 1.09005 * 110.48466 * 102.11234 * 21 19 17 37 37 H 1.09005 * 109.87819 * 117.39638 * 22 21 19 38 38 H 1.08999 * 109.87686 * 238.54779 * 22 21 19 39 39 H 1.09005 * 110.65388 * 201.48209 * 24 23 22 40 40 H 1.09000 * 110.60102 * 78.47676 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 1.7468 -7.2471 -0.0017 15 8 0.5514 -7.4694 -0.0018 16 7 2.6227 -8.2715 -0.0016 17 6 2.1344 -9.6527 -0.0011 18 1 1.2197 -9.7145 0.5886 19 6 3.1971 -10.5691 0.6085 20 1 4.1266 -10.5145 0.0418 21 6 2.6862 -12.0281 0.6926 22 6 3.1840 -12.5241 2.0640 23 8 3.9421 -11.4556 2.6555 24 6 3.4374 -10.2219 2.0998 25 6 1.8456 -10.0920 -1.4379 26 9 3.0195 -10.0126 -2.1948 27 9 1.3797 -11.4112 -1.4376 28 9 0.8737 -9.2540 -1.9953 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 3.1497 -5.7991 -0.0012 34 1 3.5763 -8.0942 -0.0011 35 1 1.5974 -12.0540 0.6498 36 1 3.1131 -12.6287 -0.1106 37 1 2.3337 -12.7713 2.6998 38 1 3.8187 -13.4006 1.9331 39 1 4.1769 -9.4267 2.1945 40 1 2.5027 -9.9377 2.5832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627956413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:07 Heat of formation + Delta-G solvation = -263.902084 kcal Electronic energy + Delta-G solvation = -30187.075341 eV Core-core repulsion = 25201.032068 eV Total energy + Delta-G solvation = -4986.043274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.27379 -47.82361 -47.65790 -40.48930 -39.61642 -38.28502 -35.98046 -34.50867 -33.77326 -32.65181 -31.41094 -30.02613 -28.54295 -27.25967 -24.59848 -23.70849 -22.95306 -21.48670 -20.92577 -19.69275 -18.88876 -18.68893 -18.36520 -18.12342 -17.86592 -17.16705 -16.48307 -15.81146 -15.52867 -15.52336 -15.38487 -14.80031 -14.67307 -14.53991 -14.42597 -14.18251 -14.11785 -14.07938 -13.95375 -13.79343 -13.75166 -13.55636 -12.97254 -12.67704 -12.35571 -12.24535 -12.03545 -11.78895 -11.65631 -11.57356 -11.24887 -11.12783 -10.53065 -10.37193 -10.28350 -10.13673 -9.65951 -9.65561 -8.85578 -8.67756 -8.13438 -6.54201 -3.96538 2.21343 2.45460 3.11058 3.14334 3.20040 3.23567 3.29310 3.47936 3.70257 3.73875 3.89018 4.01742 4.07614 4.22516 4.34026 4.39660 4.57975 4.66161 4.73889 4.83107 4.92914 5.14249 5.24517 5.29335 5.34364 5.43434 5.54913 5.81297 5.90893 5.92662 6.02851 6.37544 6.57400 6.73148 7.43119 7.88543 7.95243 8.41002 8.51838 9.01385 9.35637 9.83191 10.62487 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.002308 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.950387 B =12127.308130 C =12798.768831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.128 3.872 13 N -0.716 5.716 14 C 0.705 3.295 15 O -0.580 6.580 16 N -0.740 5.740 17 C 0.142 3.858 18 H 0.134 0.866 19 C -0.137 4.137 20 H 0.107 0.893 21 C -0.153 4.153 22 C 0.047 3.953 23 O -0.374 6.374 24 C 0.061 3.939 25 C 0.434 3.566 26 F -0.183 7.183 27 F -0.182 7.182 28 F -0.166 7.166 29 H 0.275 0.725 30 H 0.396 0.604 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.409 0.591 34 H 0.407 0.593 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.837 -23.898 1.301 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.213 3.787 11 O -0.485 6.485 12 C -0.001 4.001 13 N -0.373 5.373 14 C 0.405 3.595 15 O -0.457 6.457 16 N -0.397 5.397 17 C 0.032 3.968 18 H 0.152 0.848 19 C -0.156 4.156 20 H 0.125 0.875 21 C -0.191 4.191 22 C -0.030 4.030 23 O -0.292 6.292 24 C -0.016 4.016 25 C 0.378 3.622 26 F -0.165 7.165 27 F -0.163 7.163 28 F -0.147 7.147 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.247 0.753 34 H 0.243 0.757 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.527 -23.863 1.429 24.165 hybrid contribution 0.370 0.981 -0.604 1.210 sum 3.897 -22.882 0.824 23.226 Atomic orbital electron populations 1.69607 1.06015 1.28697 1.49076 1.25330 0.95672 0.99960 0.96705 0.85866 0.78783 0.80117 0.79169 1.19763 1.20836 1.19755 1.19676 0.93434 0.81974 1.48468 0.87709 1.41778 1.09511 1.04439 1.62464 1.19712 0.88285 0.84958 0.85770 1.90495 1.13703 1.86812 1.57498 1.20847 0.91101 0.84712 1.03392 1.44723 1.11561 1.03011 1.78012 1.15821 0.85067 0.80668 0.77961 1.90962 1.13541 1.83937 1.57305 1.44898 1.10095 1.03150 1.81592 1.21791 1.01749 0.82685 0.90571 0.84797 1.23085 0.98793 0.94662 0.99094 0.87490 1.23173 1.02953 0.94102 0.98874 1.23200 0.96063 0.91258 0.92462 1.88919 1.59090 1.14951 1.66287 1.23532 1.00581 0.88139 0.89306 1.21273 0.74744 0.75082 0.91143 1.93173 1.48280 1.95971 1.79036 1.93160 1.89064 1.37199 1.96888 1.93288 1.63317 1.70982 1.87136 0.91485 0.76988 0.89755 0.89771 0.75339 0.75682 0.89244 0.89361 0.91886 0.89492 0.88060 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.58 13.05 55.50 0.72 -22.86 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.29 29.55 -169.99 -5.02 15.26 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.31 -8.18 9.68 -14.94 -0.14 -8.32 16 8 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.55 -13.27 5.29 -10.96 -0.06 -13.33 16 10 C 0.43 9.48 7.85 -10.98 -0.09 9.39 16 11 O -0.60 -14.80 15.24 5.55 0.08 -14.72 16 12 C 0.13 2.25 6.15 -5.19 -0.03 2.22 16 13 N -0.72 -11.06 5.53 -66.41 -0.37 -11.43 16 14 C 0.71 10.20 8.10 -86.91 -0.70 9.50 16 15 O -0.58 -10.19 14.91 5.29 0.08 -10.11 16 16 N -0.74 -7.51 4.76 -58.67 -0.28 -7.79 16 17 C 0.14 1.27 1.59 -67.93 -0.11 1.17 16 18 H 0.13 1.27 7.57 -51.93 -0.39 0.87 16 19 C -0.14 -0.91 2.57 -88.61 -0.23 -1.14 16 20 H 0.11 0.65 7.89 -51.93 -0.41 0.24 16 21 C -0.15 -0.90 4.96 -25.20 -0.13 -1.03 16 22 C 0.05 0.29 7.70 37.73 0.29 0.58 16 23 O -0.37 -3.31 11.52 -35.23 -0.41 -3.71 16 24 C 0.06 0.44 6.96 38.21 0.27 0.71 16 25 C 0.43 4.65 2.81 37.16 0.10 4.75 16 26 F -0.18 -1.97 16.77 2.25 0.04 -1.94 16 27 F -0.18 -1.74 14.39 2.25 0.03 -1.71 16 28 F -0.17 -2.36 15.67 2.25 0.04 -2.33 16 29 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.40 9.25 7.90 -40.82 -0.32 8.93 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.41 6.10 7.45 -40.82 -0.30 5.79 16 34 H 0.41 3.16 8.62 -40.82 -0.35 2.81 16 35 H 0.09 0.51 6.85 -51.93 -0.36 0.16 16 36 H 0.09 0.47 8.05 -51.93 -0.42 0.05 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.51 8.04 -51.93 -0.42 0.10 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -32.00 350.43 -5.32 -37.31 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -4.60 Total: 13.66 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: -0.86 Total: 18.41 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.02 Total: -55.41 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.24 Total: -28.54 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.11 Total: -5.97 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.00 -5.32 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627956413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.587 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds