Wall clock time and date at job start Tue Mar 31 2020 22:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99872 * 179.97438 * 13 12 10 15 15 O 1.21590 * 120.00297 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99768 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99449 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47303 * 325.00044 * 17 16 14 19 19 C 1.52999 * 109.46802 * 204.99768 * 17 16 14 20 20 H 1.08999 * 110.80666 * 300.70878 * 19 17 16 21 21 C 1.54812 * 110.90745 * 177.07384 * 19 17 16 22 22 C 1.54099 * 104.18868 * 220.92316 * 21 19 17 23 23 O 1.43739 * 107.29380 * 357.97455 * 22 21 19 24 24 C 1.44415 * 107.00219 * 26.48509 * 23 22 21 25 25 C 1.52996 * 109.46983 * 85.00419 * 17 16 14 26 26 F 1.39907 * 109.47394 * 59.99292 * 25 17 16 27 27 F 1.39904 * 109.47511 * 179.97438 * 25 17 16 28 28 F 1.39908 * 109.47025 * 299.99546 * 25 17 16 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 34 34 H 0.96992 * 119.99896 * 0.02562 * 16 14 13 35 35 H 1.09000 * 110.48725 * 339.60089 * 21 19 17 36 36 H 1.09005 * 110.48466 * 102.11234 * 21 19 17 37 37 H 1.09005 * 109.87819 * 117.39638 * 22 21 19 38 38 H 1.08999 * 109.87686 * 238.54779 * 22 21 19 39 39 H 1.09005 * 110.65388 * 201.48209 * 24 23 22 40 40 H 1.09000 * 110.60102 * 78.47676 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 1.7468 -7.2471 -0.0017 15 8 0.5514 -7.4694 -0.0018 16 7 2.6227 -8.2715 -0.0016 17 6 2.1344 -9.6527 -0.0011 18 1 1.2197 -9.7145 0.5886 19 6 3.1971 -10.5691 0.6085 20 1 4.1266 -10.5145 0.0418 21 6 2.6862 -12.0281 0.6926 22 6 3.1840 -12.5241 2.0640 23 8 3.9421 -11.4556 2.6555 24 6 3.4374 -10.2219 2.0998 25 6 1.8456 -10.0920 -1.4379 26 9 3.0195 -10.0126 -2.1948 27 9 1.3797 -11.4112 -1.4376 28 9 0.8737 -9.2540 -1.9953 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 3.1497 -5.7991 -0.0012 34 1 3.5763 -8.0942 -0.0011 35 1 1.5974 -12.0540 0.6498 36 1 3.1131 -12.6287 -0.1106 37 1 2.3337 -12.7713 2.6998 38 1 3.8187 -13.4006 1.9331 39 1 4.1769 -9.4267 2.1945 40 1 2.5027 -9.9377 2.5832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627956413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:07 Heat of formation + Delta-G solvation = -288.934892 kcal Electronic energy + Delta-G solvation = -30188.160845 eV Core-core repulsion = 25201.032068 eV Total energy + Delta-G solvation = -4987.128778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.15243 -48.66094 -48.61316 -41.49591 -40.49488 -39.93842 -36.90718 -36.20399 -35.32697 -33.49463 -33.28056 -30.72057 -29.42616 -28.59092 -26.37407 -24.52773 -23.56585 -22.27885 -21.88784 -21.37057 -20.16572 -19.81245 -19.57146 -19.30124 -18.83093 -17.94583 -17.43700 -17.18701 -16.78247 -16.53959 -16.47235 -16.11803 -15.87341 -15.63885 -15.50774 -15.40812 -15.22002 -15.13799 -15.03596 -14.80622 -14.71107 -14.45761 -13.95643 -13.77857 -13.57496 -13.52834 -13.32335 -12.96167 -12.88640 -12.45938 -12.31046 -12.20954 -12.13528 -11.74514 -11.55587 -11.54972 -10.70260 -10.66769 -10.54680 -10.13332 -10.04448 -8.49973 -6.00109 1.20694 1.38890 1.43998 1.54029 1.56004 1.91371 2.06559 2.28189 2.62233 2.70721 2.82770 3.03372 3.16141 3.17503 3.31726 3.48569 3.63440 3.79583 3.98527 4.10999 4.21043 4.24460 4.31786 4.44959 4.46946 4.73325 4.79521 4.87962 4.91934 5.04187 5.08805 5.24498 5.39314 5.73023 5.85402 5.93107 6.48953 6.84678 7.04587 7.34191 7.46501 7.95585 8.66636 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.002308 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.950387 B =12127.308130 C =12798.768831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.141 3.859 13 N -0.717 5.717 14 C 0.708 3.292 15 O -0.610 6.610 16 N -0.724 5.724 17 C 0.147 3.853 18 H 0.132 0.868 19 C -0.127 4.127 20 H 0.118 0.882 21 C -0.151 4.151 22 C 0.043 3.957 23 O -0.395 6.395 24 C 0.060 3.940 25 C 0.432 3.568 26 F -0.183 7.183 27 F -0.174 7.174 28 F -0.189 7.189 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.413 0.587 34 H 0.421 0.579 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 -24.742 1.436 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.511 6.511 12 C 0.013 3.987 13 N -0.375 5.375 14 C 0.408 3.592 15 O -0.489 6.489 16 N -0.381 5.381 17 C 0.038 3.962 18 H 0.150 0.850 19 C -0.146 4.146 20 H 0.136 0.864 21 C -0.189 4.189 22 C -0.033 4.033 23 O -0.315 6.315 24 C -0.017 4.017 25 C 0.376 3.624 26 F -0.164 7.164 27 F -0.155 7.155 28 F -0.170 7.170 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.251 0.749 34 H 0.260 0.740 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.164 -24.752 1.563 25.148 hybrid contribution 0.196 1.108 -0.654 1.302 sum 4.360 -23.643 0.909 24.059 Atomic orbital electron populations 1.69675 1.06992 1.29671 1.49299 1.26113 0.96519 1.02666 0.95838 0.84944 0.77724 0.76328 0.79104 1.19546 1.19751 1.19424 1.19692 0.92970 0.83533 1.50390 0.89510 1.41832 1.09615 1.04602 1.63463 1.20411 0.88124 0.85888 0.83499 1.90474 1.15123 1.87539 1.57994 1.20624 0.90888 0.82866 1.04330 1.44623 1.11293 1.03007 1.78534 1.15856 0.85035 0.80803 0.77521 1.90948 1.15039 1.84343 1.58620 1.44724 1.10329 1.02825 1.80257 1.21897 1.02586 0.82121 0.89615 0.85037 1.23048 0.98361 0.94528 0.98704 0.86371 1.23188 1.03131 0.93473 0.99079 1.23342 0.96409 0.91057 0.92501 1.88900 1.59801 1.15840 1.66918 1.23577 1.00685 0.88048 0.89366 1.21485 0.74250 0.75132 0.91567 1.93174 1.48082 1.95983 1.79179 1.93175 1.88980 1.36495 1.96872 1.93245 1.64357 1.71828 1.87602 0.91094 0.76688 0.88502 0.89045 0.74937 0.74046 0.89075 0.88446 0.91303 0.88296 0.87358 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.20 13.05 21.66 0.28 -47.92 16 2 C -0.01 -0.55 5.50 84.92 0.47 -0.08 16 3 Si 1.00 41.23 29.55 68.60 2.03 43.26 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.34 -18.20 9.68 84.04 0.81 -17.39 16 8 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 9 N -0.56 -27.41 5.29 -306.98 -1.62 -29.04 16 10 C 0.43 19.24 7.85 87.66 0.69 19.92 16 11 O -0.62 -30.91 15.24 -3.07 -0.05 -30.96 16 12 C 0.14 4.88 6.15 85.63 0.53 5.40 16 13 N -0.72 -21.41 5.53 -482.28 -2.67 -24.08 16 14 C 0.71 19.65 8.10 179.05 1.45 21.10 16 15 O -0.61 -20.87 14.91 -4.00 -0.06 -20.93 16 16 N -0.72 -13.56 4.76 -457.80 -2.18 -15.74 16 17 C 0.15 2.41 1.59 44.99 0.07 2.48 16 18 H 0.13 2.32 7.57 -2.39 -0.02 2.30 16 19 C -0.13 -1.44 2.57 -9.49 -0.02 -1.46 16 20 H 0.12 1.12 7.89 -2.39 -0.02 1.11 16 21 C -0.15 -1.46 4.96 31.58 0.16 -1.31 16 22 C 0.04 0.46 7.70 72.35 0.56 1.02 16 23 O -0.40 -6.36 11.52 -148.98 -1.72 -8.08 16 24 C 0.06 0.77 6.96 72.67 0.51 1.27 16 25 C 0.43 8.65 2.81 71.98 0.20 8.85 16 26 F -0.18 -3.62 16.77 44.97 0.75 -2.87 16 27 F -0.17 -3.05 14.39 44.97 0.65 -2.41 16 28 F -0.19 -5.25 15.67 44.97 0.70 -4.54 16 29 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 30 H 0.40 18.82 7.90 -92.71 -0.73 18.09 16 31 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.09 3.07 8.14 -2.39 -0.02 3.06 16 33 H 0.41 11.87 7.45 -92.71 -0.69 11.18 16 34 H 0.42 5.69 8.62 -92.71 -0.80 4.89 16 35 H 0.09 0.87 6.85 -2.39 -0.02 0.85 16 36 H 0.10 0.79 8.05 -2.38 -0.02 0.78 16 37 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.07 0.89 8.04 -2.39 -0.02 0.87 16 Total: -1.00 -67.77 350.43 0.46 -67.31 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -1.08 Total: 36.17 kcal Atomic # 6 Polarization: 34.40 SS G_CDS: 5.41 Total: 39.81 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -6.19 Total: -116.77 kcal Atomic # 8 Polarization: -58.14 SS G_CDS: -1.82 Total: -59.96 kcal Atomic # 9 Polarization: -11.92 SS G_CDS: 2.11 Total: -9.82 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -67.77 0.46 -67.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627956413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.623 kcal (2) G-P(sol) polarization free energy of solvation -67.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -289.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds