Wall clock time and date at job start Tue Mar 31 2020 22:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00178 * 2 1 4 4 H 1.48502 * 109.46959 * 269.99804 * 3 2 1 5 5 H 1.48496 * 109.47441 * 29.99691 * 3 2 1 6 6 H 1.48495 * 109.47365 * 149.99902 * 3 2 1 7 7 C 1.38796 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00217 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00324 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47166 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00099 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99841 * 179.97438 * 11 10 9 14 14 C 1.46923 * 120.62853 * 179.97438 * 13 11 10 15 15 C 1.53194 * 108.77636 * 233.63053 * 14 13 11 16 16 C 1.53044 * 109.30897 * 305.36525 * 15 14 13 17 17 N 1.46502 * 109.45652 * 181.38557 * 16 15 14 18 18 C 1.34810 * 126.59499 * 275.02713 * 17 16 15 19 19 C 1.36596 * 106.84096 * 180.02562 * 18 17 16 20 20 C 1.47528 * 125.77210 * 179.97438 * 19 18 17 21 21 N 1.34775 * 120.00015 * 179.97438 * 20 19 18 22 22 O 1.21599 * 119.99623 * 359.97438 * 20 19 18 23 23 N 1.34394 * 108.45958 * 359.97438 * 19 18 17 24 24 N 1.28764 * 109.52320 * 0.02562 * 23 19 18 25 25 C 1.53042 * 109.53713 * 61.36976 * 16 15 14 26 26 C 1.46923 * 120.63020 * 0.02562 * 13 11 10 27 27 H 0.97007 * 120.00210 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47352 * 59.99680 * 10 9 7 29 29 H 1.09006 * 109.47108 * 299.99839 * 10 9 7 30 30 H 1.09003 * 109.58361 * 113.84334 * 14 13 11 31 31 H 1.08995 * 109.59126 * 353.41974 * 14 13 11 32 32 H 1.09002 * 109.49769 * 185.41610 * 15 14 13 33 33 H 1.08993 * 109.49916 * 65.31944 * 15 14 13 34 34 H 1.08999 * 109.46127 * 301.35442 * 16 15 14 35 35 H 1.08001 * 126.58390 * 0.02562 * 18 17 16 36 36 H 0.97003 * 119.99748 * 359.97438 * 21 20 19 37 37 H 0.97004 * 119.99922 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.49973 * 58.57783 * 25 16 15 39 39 H 1.09001 * 109.49490 * 178.68140 * 25 16 15 40 40 H 1.08999 * 109.58942 * 246.15926 * 26 13 11 41 41 H 1.08998 * 109.58986 * 6.58324 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0021 11 6 1.9872 -5.3027 0.0030 12 8 0.7909 -5.5023 0.0030 13 7 2.8440 -6.3432 0.0037 14 6 2.3438 -7.7247 0.0051 15 6 2.9850 -8.4800 1.1735 16 6 4.5079 -8.3629 1.0770 17 7 5.1255 -9.1119 2.1743 18 6 5.3496 -8.6649 3.4262 19 6 5.9409 -9.6879 4.1117 20 6 6.3658 -9.6476 5.5239 21 7 6.9400 -10.7296 6.0860 22 8 6.1979 -8.6381 6.1806 23 7 6.0702 -10.7373 3.2821 24 7 5.5972 -10.4313 2.1242 25 6 4.9151 -6.8907 1.1721 26 6 4.2957 -6.1174 0.0042 27 1 -0.4851 0.8401 -0.0004 28 1 3.1237 -3.7310 0.8925 29 1 3.1250 -3.7318 -0.8875 30 1 2.6096 -8.2104 -0.9338 31 1 1.2603 -7.7210 0.1231 32 1 2.6974 -9.5305 1.1293 33 1 2.6459 -8.0489 2.1154 34 1 4.8439 -8.7717 0.1241 35 1 5.1080 -7.6860 3.8131 36 1 7.0735 -11.5350 5.5621 37 1 7.2197 -10.7029 7.0144 38 1 4.5577 -6.4745 2.1139 39 1 6.0012 -6.8100 1.1268 40 1 4.7210 -6.4717 -0.9347 41 1 4.5000 -5.0532 0.1217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633006151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:52 Heat of formation + Delta-G solvation = 22.757819 kcal Electronic energy + Delta-G solvation = -26153.633380 eV Core-core repulsion = 22196.922975 eV Total energy + Delta-G solvation = -3956.710405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.67896 -40.21227 -39.39115 -37.78455 -34.94257 -33.96550 -32.48974 -32.26351 -31.46707 -31.10663 -29.12253 -26.01193 -25.50507 -24.47608 -23.64497 -22.95401 -21.13928 -20.98647 -19.32291 -18.69268 -17.86603 -17.37982 -16.85276 -16.47961 -16.28187 -15.86363 -15.57478 -15.10041 -14.95835 -14.85822 -14.70997 -14.45614 -14.27688 -14.02779 -13.66592 -13.23233 -12.96804 -12.68683 -12.64294 -12.47705 -12.08087 -11.79526 -11.78554 -11.67456 -11.27880 -11.11334 -11.08078 -10.81631 -10.65493 -10.62908 -10.10565 -9.87429 -9.66788 -9.54022 -9.12532 -8.83939 -8.31230 -6.58011 -6.27546 -3.99168 0.75823 1.30670 1.55392 2.70842 2.87032 2.93347 3.07028 3.18329 3.19870 3.26121 3.46134 3.72890 3.83336 4.01757 4.14391 4.29868 4.35189 4.45363 4.52581 4.64341 4.74766 4.80451 4.91053 5.02453 5.07955 5.13953 5.25116 5.28083 5.37976 5.44588 5.46924 5.65065 5.69202 5.75177 5.97432 5.98751 6.35468 6.36087 6.88074 7.29533 7.53486 7.54305 7.84920 8.28802 8.36220 9.17887 10.79804 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.002264 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.043110 B =12364.361642 C =13450.729249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.537 3.463 12 O -0.511 6.511 13 N -0.626 5.626 14 C 0.119 3.881 15 C -0.145 4.145 16 C 0.151 3.849 17 N -0.349 5.349 18 C 0.102 3.898 19 C -0.113 4.113 20 C 0.612 3.388 21 N -0.840 5.840 22 O -0.540 6.540 23 N -0.209 5.209 24 N -0.062 5.062 25 C -0.150 4.150 26 C 0.115 3.885 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.204 0.796 36 H 0.409 0.591 37 H 0.407 0.593 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.713 -21.429 4.407 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.325 3.675 12 O -0.384 6.384 13 N -0.363 5.363 14 C -0.005 4.005 15 C -0.184 4.184 16 C 0.050 3.950 17 N -0.133 5.133 18 C -0.055 4.055 19 C -0.253 4.253 20 C 0.395 3.605 21 N -0.404 5.404 22 O -0.415 6.415 23 N -0.083 5.083 24 N -0.042 5.042 25 C -0.190 4.190 26 C -0.009 4.009 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.137 0.863 35 H 0.220 0.780 36 H 0.238 0.762 37 H 0.239 0.761 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.732 -22.109 3.760 25.788 hybrid contribution 2.083 1.734 0.659 2.790 sum 14.816 -20.374 4.419 25.576 Atomic orbital electron populations 1.70010 1.05967 1.27553 1.46643 1.24994 0.95037 0.99073 0.94454 0.86163 0.79417 0.81530 0.78374 1.20247 1.20718 1.19671 1.22837 0.94853 0.91541 1.59223 0.90907 1.85446 1.04737 0.96416 1.96714 1.23573 1.06726 0.95235 1.04787 1.20388 0.86178 0.86178 0.74712 1.90710 1.15141 1.85123 1.47412 1.48195 1.06183 1.05834 1.76085 1.21461 1.01372 0.80991 0.96683 1.22419 0.91960 1.02521 1.01505 1.21790 0.93755 0.91394 0.88102 1.50790 1.40884 1.11961 1.09683 1.23392 0.96143 1.01230 0.84765 1.21337 1.14068 0.92581 0.97289 1.16748 0.76581 0.83260 0.83918 1.43567 1.63814 1.16310 1.16673 1.90889 1.56115 1.31736 1.62779 1.74584 1.12227 1.23520 0.97953 1.82003 1.15525 0.92126 1.14519 1.22446 1.02438 0.92187 1.01897 1.21635 0.80093 1.02010 0.97163 0.92114 0.89152 0.89102 0.90978 0.87677 0.89397 0.90138 0.86336 0.77950 0.76151 0.76146 0.89625 0.89077 0.90562 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.56 13.22 55.49 0.73 -24.83 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.87 29.55 -169.99 -5.02 15.84 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.54 -14.72 9.50 30.94 0.29 -14.42 16 8 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -2.81 4.50 36.01 0.16 -2.65 16 11 C 0.54 9.04 7.72 -10.98 -0.08 8.96 16 12 O -0.51 -10.72 15.28 5.56 0.08 -10.63 16 13 N -0.63 -7.07 2.97 -172.80 -0.51 -7.59 16 14 C 0.12 1.09 6.43 -3.71 -0.02 1.07 16 15 C -0.14 -1.07 5.68 -26.61 -0.15 -1.22 16 16 C 0.15 0.98 3.19 -67.88 -0.22 0.76 16 17 N -0.35 -2.89 3.54 -54.52 -0.19 -3.08 16 18 C 0.10 0.88 10.41 -16.84 -0.18 0.70 16 19 C -0.11 -1.10 6.99 -83.55 -0.58 -1.69 16 20 C 0.61 6.02 8.09 -12.47 -0.10 5.92 16 21 N -0.84 -5.15 8.87 30.46 0.27 -4.88 16 22 O -0.54 -7.05 17.70 5.28 0.09 -6.96 16 23 N -0.21 -2.14 12.04 32.85 0.40 -1.74 16 24 N -0.06 -0.64 13.78 60.35 0.83 0.19 16 25 C -0.15 -0.91 4.99 -26.63 -0.13 -1.04 16 26 C 0.12 0.88 6.34 -3.74 -0.02 0.86 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.09 1.52 7.69 -51.91 -0.40 1.12 16 29 H 0.09 1.53 7.94 -51.91 -0.41 1.12 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 1.20 7.00 -51.93 -0.36 0.83 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.20 1.38 7.39 -52.49 -0.39 0.99 16 36 H 0.41 1.88 8.52 -40.82 -0.35 1.54 16 37 H 0.41 1.77 8.93 -40.82 -0.36 1.40 16 38 H 0.09 0.56 7.30 -51.93 -0.38 0.18 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.84 5.93 -51.93 -0.31 0.53 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -36.77 363.85 -6.23 -42.99 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.04 Total: -0.23 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.13 Total: -0.80 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 1.52 Total: -41.93 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.18 Total: -17.59 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.77 -6.23 -42.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633006151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.749 kcal (2) G-P(sol) polarization free energy of solvation -36.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds